Wall clock time and date at job start Wed Apr 1 2020 04:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.46503 * 120.00534 * 270.00413 * 3 2 1 5 5 C 1.50696 * 109.46841 * 269.99627 * 4 3 2 6 6 H 1.08007 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00439 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46818 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46770 * 120.00183 * 9 7 5 12 12 H 1.48495 * 109.47306 * 240.00774 * 9 7 5 13 13 C 1.34786 * 119.99724 * 89.99884 * 3 2 1 14 14 O 1.21276 * 119.99943 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99754 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46946 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99994 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47134 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47368 * 179.97438 * 18 17 16 20 20 C 1.34773 * 120.00244 * 179.97438 * 19 18 17 21 21 O 1.21612 * 119.99991 * 0.02562 * 20 19 18 22 22 C 1.47381 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.38123 * 126.46411 * 359.97402 * 22 20 19 24 24 N 1.34434 * 108.38629 * 180.02562 * 23 22 20 25 25 H 0.96996 * 125.38904 * 179.97438 * 24 23 22 26 26 C 1.37707 * 109.22038 * 359.75809 * 24 23 22 27 27 C 1.43195 * 125.84525 * 180.24841 * 26 24 23 28 28 N 9.61775 * 153.06776 * 218.88206 * 17 1 2 29 29 C 1.36359 * 108.31292 * 0.40040 * 26 24 23 30 30 H 1.08998 * 109.47150 * 299.99424 * 1 2 3 31 31 H 1.08996 * 109.47607 * 60.00159 * 1 2 3 32 32 H 1.09007 * 109.46405 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47150 * 240.00576 * 2 1 3 34 34 H 1.08998 * 109.47399 * 120.00345 * 2 1 3 35 35 H 1.09000 * 109.46817 * 29.99637 * 4 3 2 36 36 H 1.09000 * 109.47346 * 150.00077 * 4 3 2 37 37 H 0.96999 * 119.99974 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47685 * 59.99658 * 15 13 3 39 39 H 1.08999 * 109.47260 * 299.99557 * 15 13 3 40 40 H 1.00899 * 111.00085 * 303.95437 * 16 15 13 41 41 H 1.08995 * 109.47121 * 60.00202 * 17 16 15 42 42 H 1.09002 * 109.46993 * 299.99652 * 17 16 15 43 43 H 1.09000 * 109.47338 * 59.99795 * 18 17 16 44 44 H 1.08999 * 109.47367 * 300.00247 * 18 17 16 45 45 H 0.97008 * 119.99935 * 0.02562 * 19 18 17 46 46 H 1.07999 * 125.80844 * 0.05565 * 23 22 20 47 47 H 1.08002 * 126.49687 * 179.88099 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3900 -2.8778 8 7 3.3490 3.1261 -3.6179 9 14 5.9135 2.0973 -3.4168 10 1 6.6011 1.2420 -2.4164 11 1 5.9214 1.4178 -4.7372 12 1 6.6203 3.3987 -3.5254 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1601 1.1674 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0773 1.5454 4.8803 18 6 2.4188 2.5117 6.0163 19 7 2.1854 1.8534 7.3041 20 6 2.4205 2.5177 8.4529 21 8 2.8261 3.6638 8.4205 22 6 2.1862 1.8553 9.7484 23 6 1.7295 0.5660 9.9404 24 7 1.6483 0.3374 11.2627 25 1 1.3543 -0.4911 11.6725 26 6 2.0531 1.4641 11.9432 27 6 2.1111 1.6083 13.3667 28 7 2.1594 1.7220 14.4960 29 6 2.3860 2.4200 11.0296 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0278 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1412 -1.1383 37 1 3.6750 3.5167 -4.4437 38 1 2.6227 0.4186 2.5299 39 1 0.9444 1.0114 2.5302 40 1 3.2591 2.5438 3.5216 41 1 2.7078 0.6594 4.9545 42 1 1.0298 1.2533 4.9548 43 1 1.7880 3.3975 5.9418 44 1 3.4661 2.8043 5.9420 45 1 1.8622 0.9391 7.3299 46 1 1.4804 -0.1388 9.1609 47 1 2.7398 3.4177 11.2437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125987934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:40 Heat of formation + Delta-G solvation = -21.975723 kcal Electronic energy + Delta-G solvation = -28168.028507 eV Core-core repulsion = 23964.688445 eV Total energy + Delta-G solvation = -4203.340062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.46544 -40.67624 -40.15375 -37.61797 -37.46912 -36.78532 -35.27263 -34.81215 -32.56694 -31.63009 -31.25818 -30.25029 -28.94143 -26.72014 -24.72536 -24.16971 -23.57213 -23.49928 -22.81726 -21.01020 -20.55940 -19.87722 -18.59093 -17.90324 -17.47175 -17.39302 -17.07085 -16.98662 -16.52614 -16.37742 -16.19705 -15.83753 -15.27029 -15.20068 -14.98552 -14.83361 -14.58025 -14.48455 -14.31969 -14.12549 -14.09602 -13.94281 -13.68323 -13.47241 -13.41358 -13.24632 -13.17388 -12.99374 -12.64745 -12.54491 -12.42525 -12.29151 -12.10892 -11.80098 -11.65093 -11.07402 -10.62881 -10.51012 -10.27345 -9.96661 -9.37619 -9.37175 -9.31606 -8.19747 -6.34739 0.37053 0.80968 1.23466 1.37574 1.40521 1.51674 1.94111 2.07074 2.14515 2.28668 2.36418 2.51418 2.61336 3.05886 3.09826 3.45037 3.79481 3.86862 3.98016 4.16978 4.17515 4.24269 4.26585 4.42283 4.46982 4.54214 4.61929 4.68873 4.75134 4.93649 4.98718 5.03135 5.06221 5.09643 5.11397 5.27087 5.39779 5.46583 5.49958 5.57069 5.62122 5.88987 6.01230 6.10272 6.26207 6.32552 6.42226 6.74071 6.74789 6.90594 7.32262 7.42436 7.59643 8.87287 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.001444 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.590897 B =19381.830229 C =20040.983106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.489 3.511 14 O -0.590 6.590 15 C 0.063 3.937 16 N -0.696 5.696 17 C 0.061 3.939 18 C 0.126 3.874 19 N -0.706 5.706 20 C 0.585 3.415 21 O -0.598 6.598 22 C -0.258 4.258 23 C 0.136 3.864 24 N -0.499 5.499 25 H 0.447 0.553 26 C 0.037 3.963 27 C 0.302 3.698 28 N -0.452 5.452 29 C -0.062 4.062 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.019 0.981 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.420 0.580 46 H 0.242 0.758 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 -18.488 27.219 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.211 1.211 13 C 0.278 3.722 14 O -0.470 6.470 15 C -0.069 4.069 16 N -0.329 5.329 17 C -0.067 4.067 18 C 0.001 3.999 19 N -0.359 5.359 20 C 0.374 3.626 21 O -0.479 6.479 22 C -0.267 4.267 23 C -0.009 4.009 24 N -0.094 5.094 25 H 0.289 0.711 26 C -0.074 4.074 27 C -0.013 4.013 28 N -0.129 5.129 29 C -0.090 4.090 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.037 0.963 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.258 0.742 46 H 0.258 0.742 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.316 -16.684 28.873 34.368 hybrid contribution 1.451 -0.380 -1.059 1.836 sum -6.865 -17.065 27.813 33.345 Atomic orbital electron populations 1.22163 0.94670 1.03480 1.01645 1.21763 0.95234 0.81218 1.04032 1.48288 1.64159 1.15170 1.06102 1.18652 0.95165 0.91418 0.80704 1.21765 0.97935 1.31776 1.06396 0.92656 1.25870 1.02328 0.94531 0.96532 1.70067 1.37725 1.34355 1.14841 0.85365 0.79077 0.77913 0.78417 1.18878 1.19505 1.21054 1.21434 0.77329 0.86694 0.86734 1.90655 1.47726 1.20702 1.87956 1.21800 1.04703 0.93913 0.86455 1.59928 1.32689 1.38888 1.01388 1.22081 1.03597 0.94955 0.86115 1.21041 1.00680 0.96133 0.82057 1.45400 1.68138 1.18138 1.04192 1.17751 0.76084 0.84843 0.83910 1.90807 1.48672 1.20247 1.88198 1.19395 1.18230 0.97131 0.91984 1.23181 0.96137 0.96073 0.85471 1.41587 1.48524 1.13254 1.06022 0.71057 1.14853 1.18070 0.91213 0.83272 1.24439 0.92313 0.93639 0.90894 1.81377 1.11524 1.07449 1.12590 1.21143 0.98571 0.98769 0.90546 0.91812 0.94836 0.88507 0.91316 0.87587 0.96270 0.98952 0.92515 0.89612 0.85589 0.83713 0.91787 0.87956 0.92717 0.93098 0.74204 0.74184 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.70 5.93 86.38 0.51 3.21 16 3 N -0.61 -24.37 2.46 -826.16 -2.03 -26.40 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 6 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.49 19.23 7.71 87.65 0.68 19.90 16 14 O -0.59 -30.32 15.78 -3.02 -0.05 -30.37 16 15 C 0.06 1.46 4.72 85.55 0.40 1.86 16 16 N -0.70 -16.28 6.12 -517.94 -3.17 -19.45 16 17 C 0.06 0.76 5.80 86.30 0.50 1.26 16 18 C 0.13 2.07 5.93 86.38 0.51 2.58 16 19 N -0.71 -7.21 5.54 -466.43 -2.59 -9.80 16 20 C 0.58 10.04 7.81 86.65 0.68 10.71 16 21 O -0.60 -17.50 16.92 -4.07 -0.07 -17.57 16 22 C -0.26 -2.53 6.13 -20.11 -0.12 -2.65 16 23 C 0.14 -0.20 11.43 84.27 0.96 0.76 16 24 N -0.50 0.42 6.02 -186.47 -1.12 -0.70 16 25 H 0.45 -3.41 8.96 -92.71 -0.83 -4.25 16 26 C 0.04 0.30 6.90 39.03 0.27 0.57 16 27 C 0.30 3.89 15.88 88.33 1.40 5.30 16 28 N -0.45 -8.43 18.54 19.00 0.35 -8.07 16 29 C -0.06 -0.76 10.59 22.62 0.24 -0.52 16 30 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.11 1.96 6.44 -2.39 -0.02 1.94 16 35 H 0.02 1.05 8.07 -2.39 -0.02 1.04 16 36 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.09 1.48 7.40 -2.39 -0.02 1.47 16 39 H 0.13 2.18 7.19 -2.39 -0.02 2.16 16 40 H 0.34 9.38 8.43 -89.69 -0.76 8.62 16 41 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.42 0.02 7.38 -92.70 -0.68 -0.67 16 46 H 0.24 -3.01 7.44 -2.91 -0.02 -3.03 16 47 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -96.47 411.67 0.32 -96.15 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -1.23 Total: 0.82 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.91 Total: 24.92 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -8.27 Total: -120.69 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.12 Total: -47.94 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -96.47 0.32 -96.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125987934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.175 kcal (2) G-P(sol) polarization free energy of solvation -96.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds