Wall clock time and date at job start Wed Apr 1 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2 6 6 H 1.07996 * 120.00383 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47049 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47177 * 119.99755 * 9 7 5 12 12 H 1.48496 * 109.47130 * 239.99705 * 9 7 5 13 13 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 14 14 O 1.21280 * 120.00330 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99545 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46899 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99962 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47328 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47471 * 180.02562 * 18 17 16 20 20 C 1.34772 * 120.00132 * 180.02562 * 19 18 17 21 21 O 1.21286 * 120.00208 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00064 * 180.02562 * 20 19 18 23 23 H 1.08998 * 115.54541 * 325.71563 * 22 20 19 24 24 C 1.52998 * 117.50372 * 111.38818 * 22 20 19 25 25 C 1.52991 * 60.00093 * 107.49002 * 24 22 20 26 26 H 1.09004 * 117.50089 * 252.51173 * 25 24 22 27 27 C 1.53005 * 117.50041 * 107.49346 * 25 24 22 28 28 F 1.39898 * 109.47056 * 231.37974 * 27 25 24 29 29 F 1.39902 * 109.46800 * 351.37772 * 27 25 24 30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 35 35 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 36 36 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 37 37 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46882 * 299.99456 * 15 13 3 39 39 H 1.09003 * 109.47544 * 59.99294 * 15 13 3 40 40 H 1.00900 * 111.00410 * 56.04089 * 16 15 13 41 41 H 1.08998 * 109.47582 * 300.00230 * 17 16 15 42 42 H 1.09007 * 109.46880 * 59.99859 * 17 16 15 43 43 H 1.08998 * 109.47427 * 300.00876 * 18 17 16 44 44 H 1.09007 * 109.46805 * 60.00364 * 18 17 16 45 45 H 0.96992 * 119.99664 * 0.02562 * 19 18 17 46 46 H 1.09000 * 117.50265 * 214.98586 * 24 22 20 47 47 H 1.09006 * 117.49334 * 359.97438 * 24 22 20 48 48 H 1.08993 * 109.47021 * 111.37557 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 1.0066 2.7823 -1.7036 6 1 0.1158 2.7253 -1.0957 7 6 0.9949 3.5050 -2.8777 8 7 2.0795 3.5741 -3.6184 9 14 -0.5616 4.3862 -3.4166 10 1 -1.6337 4.1541 -2.4156 11 1 -0.2935 5.8427 -3.5252 12 1 -0.9948 3.8628 -4.7370 13 6 2.2429 2.0166 1.1673 14 8 2.6468 3.1602 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0774 1.5454 4.8802 18 6 2.4201 2.5112 6.0163 19 7 2.1878 1.8526 7.3041 20 6 2.4232 2.5168 8.4529 21 8 2.8278 3.6597 8.4206 22 6 2.1848 1.8391 9.7776 23 1 1.3500 1.1387 9.8037 24 6 3.4096 1.5107 10.6337 25 6 2.4705 2.6461 11.0456 26 1 2.8309 3.6674 10.9217 27 6 1.5623 2.4087 12.2538 28 9 0.2408 2.7141 11.9110 29 9 1.6450 1.0674 12.6429 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0643 2.7985 -1.1383 36 1 2.5506 1.3453 -2.0283 37 1 2.0713 4.0828 -4.4442 38 1 0.9444 1.0114 2.5302 39 1 2.6227 0.4185 2.5299 40 1 1.7859 3.0648 3.5222 41 1 1.0300 1.2532 4.9548 42 1 2.7079 0.6593 4.9545 43 1 3.4676 2.8031 5.9415 44 1 1.7898 3.3975 5.9422 45 1 1.8646 0.9384 7.3299 46 1 3.3805 0.5944 11.2234 47 1 4.3879 1.7845 10.2386 48 1 1.8805 3.0465 13.0784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126565176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:16 Heat of formation + Delta-G solvation = -147.698657 kcal Electronic energy + Delta-G solvation = -29458.175110 eV Core-core repulsion = 24798.694106 eV Total energy + Delta-G solvation = -4659.481004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.47816 -47.46517 -40.38118 -39.16840 -37.36060 -36.36979 -35.28313 -34.41933 -32.74197 -30.16631 -29.88836 -28.19348 -27.41964 -25.67138 -24.16404 -22.78355 -22.45659 -22.19433 -21.73102 -20.52767 -18.69817 -18.38088 -17.62329 -17.51020 -17.01521 -16.65018 -16.44413 -16.28462 -16.17576 -15.55910 -15.18302 -14.80578 -14.46831 -14.35202 -14.32823 -13.98877 -13.83864 -13.69299 -13.49274 -13.22351 -12.94657 -12.91186 -12.76019 -12.60219 -12.18781 -12.06474 -11.84879 -11.72331 -11.59100 -11.47997 -11.34236 -11.20273 -11.00190 -10.91062 -10.73824 -10.51794 -10.29361 -10.06293 -9.57064 -9.43412 -8.94386 -8.46804 -8.43405 -7.66639 -6.04259 -4.08377 2.01152 2.54763 2.95794 3.25837 3.28748 3.35965 3.38330 3.43930 3.67612 3.72046 3.82899 4.01265 4.20970 4.35839 4.45475 4.49589 4.59312 4.67724 4.70188 4.84927 5.04351 5.06725 5.18230 5.27619 5.28052 5.30508 5.38373 5.40330 5.53288 5.64475 5.71646 5.74675 5.79717 6.01566 6.07511 6.27098 6.69068 6.76540 7.07061 7.10228 7.27544 7.45839 7.56205 7.82234 7.92447 8.24012 8.42161 8.91027 9.10611 9.56441 11.03901 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.001489 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.313501 B =18804.866550 C =19072.044808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.119 3.881 19 N -0.722 5.722 20 C 0.544 3.456 21 O -0.534 6.534 22 C -0.172 4.172 23 H 0.130 0.870 24 C -0.125 4.125 25 C -0.193 4.193 26 H 0.147 0.853 27 C 0.292 3.708 28 F -0.200 7.200 29 F -0.204 7.204 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.355 0.645 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.402 0.598 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -11.141 30.069 32.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.090 4.090 16 N -0.303 5.303 17 C -0.080 4.080 18 C -0.005 4.005 19 N -0.374 5.374 20 C 0.329 3.671 21 O -0.411 6.411 22 C -0.194 4.194 23 H 0.148 0.852 24 C -0.163 4.163 25 C -0.212 4.212 26 H 0.164 0.836 27 C 0.239 3.761 28 F -0.182 7.182 29 F -0.186 7.186 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.175 0.825 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.236 0.764 46 H 0.136 0.864 47 H 0.131 0.869 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.683 -9.776 29.802 31.372 hybrid contribution -2.285 -0.137 -0.505 2.344 sum -1.602 -9.913 29.298 30.970 Atomic orbital electron populations 1.22234 0.96437 1.00842 1.03293 1.21378 0.94449 0.83837 1.01633 1.48262 1.64043 1.13201 1.07715 1.19290 0.97541 0.92492 0.77985 1.21472 0.97499 1.31030 1.06109 0.92345 1.24945 0.96425 0.96313 0.96515 1.69939 1.27409 1.41655 1.14326 0.86474 0.83193 0.79649 0.78273 1.19894 1.20906 1.21019 1.20125 0.79080 0.87026 0.84838 1.90688 1.45283 1.17463 1.86895 1.21901 1.00180 0.96464 0.90414 1.59980 1.63294 1.07394 0.99620 1.22068 0.99398 0.97373 0.89115 1.21309 1.03076 0.95561 0.80515 1.45771 1.68309 1.17624 1.05690 1.19438 0.77230 0.85989 0.84410 1.90745 1.45348 1.17566 1.87406 1.22236 1.03253 1.03926 0.89950 0.85182 1.23137 0.94326 0.98865 0.99952 1.23527 1.02838 1.01176 0.93641 0.83550 1.21286 0.78829 0.79484 0.96524 1.93019 1.38446 1.92866 1.93829 1.92973 1.96117 1.37334 1.92127 0.93501 0.92833 0.90505 0.92164 0.90637 0.93851 0.95074 0.92806 0.92666 0.88733 0.82482 0.94654 0.90303 0.89989 0.91114 0.76406 0.86359 0.86921 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.11 1.70 5.98 -4.04 -0.02 1.67 16 3 N -0.60 -12.26 2.46 -175.07 -0.43 -12.69 16 4 C 0.25 6.34 5.20 -5.19 -0.03 6.31 16 5 C -0.52 -14.52 8.92 -34.44 -0.31 -14.83 16 6 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.50 10.17 7.71 -10.98 -0.08 10.09 16 14 O -0.53 -13.16 15.78 5.56 0.09 -13.07 16 15 C 0.04 0.60 4.72 -4.98 -0.02 0.57 16 16 N -0.67 -8.98 6.13 -115.06 -0.70 -9.68 16 17 C 0.05 0.46 5.80 -3.82 -0.02 0.44 16 18 C 0.12 1.16 5.93 -4.04 -0.02 1.14 16 19 N -0.72 -5.63 5.56 -60.29 -0.33 -5.96 16 20 C 0.54 5.21 7.61 -10.99 -0.08 5.13 16 21 O -0.53 -7.33 16.26 5.55 0.09 -7.24 16 22 C -0.17 -1.12 5.84 -91.78 -0.54 -1.66 16 23 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 24 C -0.13 -0.61 9.62 -26.74 -0.26 -0.87 16 25 C -0.19 -1.13 5.67 -90.62 -0.51 -1.64 16 26 H 0.15 0.95 7.67 -51.93 -0.40 0.56 16 27 C 0.29 1.51 5.67 37.16 0.21 1.72 16 28 F -0.20 -1.59 17.29 2.25 0.04 -1.55 16 29 F -0.20 -1.28 15.91 2.25 0.04 -1.24 16 30 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.36 7.26 -51.93 -0.38 0.98 16 33 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 35 H 0.04 1.28 7.42 -51.94 -0.39 0.89 16 36 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 0.68 7.19 -51.93 -0.37 0.31 16 39 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 40 H 0.36 5.15 8.43 -39.29 -0.33 4.82 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.40 1.92 8.47 -40.82 -0.35 1.57 16 46 H 0.12 0.44 7.22 -51.93 -0.37 0.06 16 47 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -36.25 409.28 -8.15 -44.40 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.41 Total: 2.27 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.41 Total: 7.59 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.73 Total: -54.08 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.32 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.07 Total: -2.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.25 -8.15 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126565176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.298 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds