Wall clock time and date at job start Wed Apr 1 2020 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2 6 6 H 1.07996 * 120.00383 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47049 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47177 * 119.99755 * 9 7 5 12 12 H 1.48496 * 109.47130 * 239.99705 * 9 7 5 13 13 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 14 14 O 1.21280 * 120.00330 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99545 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46899 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99962 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47328 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47471 * 180.02562 * 18 17 16 20 20 C 1.34772 * 120.00132 * 180.02562 * 19 18 17 21 21 O 1.21286 * 120.00208 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00064 * 180.02562 * 20 19 18 23 23 H 1.08998 * 115.54541 * 325.71563 * 22 20 19 24 24 C 1.52998 * 117.50372 * 111.38818 * 22 20 19 25 25 C 1.52991 * 60.00093 * 107.49002 * 24 22 20 26 26 H 1.09004 * 117.50089 * 252.51173 * 25 24 22 27 27 C 1.53005 * 117.50041 * 107.49346 * 25 24 22 28 28 F 1.39898 * 109.47056 * 231.37974 * 27 25 24 29 29 F 1.39902 * 109.46800 * 351.37772 * 27 25 24 30 30 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 35 35 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 36 36 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 37 37 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46882 * 299.99456 * 15 13 3 39 39 H 1.09003 * 109.47544 * 59.99294 * 15 13 3 40 40 H 1.00900 * 111.00410 * 56.04089 * 16 15 13 41 41 H 1.08998 * 109.47582 * 300.00230 * 17 16 15 42 42 H 1.09007 * 109.46880 * 59.99859 * 17 16 15 43 43 H 1.08998 * 109.47427 * 300.00876 * 18 17 16 44 44 H 1.09007 * 109.46805 * 60.00364 * 18 17 16 45 45 H 0.96992 * 119.99664 * 0.02562 * 19 18 17 46 46 H 1.09000 * 117.50265 * 214.98586 * 24 22 20 47 47 H 1.09006 * 117.49334 * 359.97438 * 24 22 20 48 48 H 1.08993 * 109.47021 * 111.37557 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 1.0066 2.7823 -1.7036 6 1 0.1158 2.7253 -1.0957 7 6 0.9949 3.5050 -2.8777 8 7 2.0795 3.5741 -3.6184 9 14 -0.5616 4.3862 -3.4166 10 1 -1.6337 4.1541 -2.4156 11 1 -0.2935 5.8427 -3.5252 12 1 -0.9948 3.8628 -4.7370 13 6 2.2429 2.0166 1.1673 14 8 2.6468 3.1602 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0774 1.5454 4.8802 18 6 2.4201 2.5112 6.0163 19 7 2.1878 1.8526 7.3041 20 6 2.4232 2.5168 8.4529 21 8 2.8278 3.6597 8.4206 22 6 2.1848 1.8391 9.7776 23 1 1.3500 1.1387 9.8037 24 6 3.4096 1.5107 10.6337 25 6 2.4705 2.6461 11.0456 26 1 2.8309 3.6674 10.9217 27 6 1.5623 2.4087 12.2538 28 9 0.2408 2.7141 11.9110 29 9 1.6450 1.0674 12.6429 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0643 2.7985 -1.1383 36 1 2.5506 1.3453 -2.0283 37 1 2.0713 4.0828 -4.4442 38 1 0.9444 1.0114 2.5302 39 1 2.6227 0.4185 2.5299 40 1 1.7859 3.0648 3.5222 41 1 1.0300 1.2532 4.9548 42 1 2.7079 0.6593 4.9545 43 1 3.4676 2.8031 5.9415 44 1 1.7898 3.3975 5.9422 45 1 1.8646 0.9384 7.3299 46 1 3.3805 0.5944 11.2234 47 1 4.3879 1.7845 10.2386 48 1 1.8805 3.0465 13.0784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126565176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:13 Heat of formation + Delta-G solvation = -175.049110 kcal Electronic energy + Delta-G solvation = -29459.361114 eV Core-core repulsion = 24798.694106 eV Total energy + Delta-G solvation = -4660.667009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.92883 -47.93268 -41.10610 -40.70407 -38.02721 -37.27028 -36.82423 -35.39042 -34.79993 -31.59598 -30.95282 -29.34768 -28.44537 -26.90645 -25.04966 -24.31011 -23.83739 -23.06005 -22.20574 -21.18629 -19.92847 -19.15901 -18.70444 -18.08625 -18.02459 -17.93724 -17.56870 -17.26057 -17.07760 -16.84516 -16.32356 -16.26817 -15.57334 -15.45838 -15.00111 -14.86593 -14.65442 -14.50383 -14.42468 -14.36060 -14.29999 -14.05082 -13.77167 -13.44919 -13.37092 -13.25460 -13.17069 -12.97034 -12.77214 -12.64953 -12.54249 -12.41801 -12.27521 -12.12950 -11.78424 -11.74750 -11.60158 -11.45862 -11.08198 -10.63313 -10.54734 -10.20800 -9.48631 -9.37629 -8.20921 -6.34117 1.33929 1.34673 1.37489 1.48359 1.85065 1.88406 2.30973 2.43545 2.47663 2.84958 3.08622 3.24018 3.35123 3.40107 3.56479 3.72444 3.74530 3.86773 4.05935 4.09163 4.15747 4.21409 4.29155 4.34745 4.42203 4.49969 4.54165 4.66139 4.67418 4.84938 4.86814 4.90521 4.95904 4.99365 5.04325 5.08197 5.25267 5.30561 5.52611 5.62207 5.82577 5.93682 6.09205 6.21295 6.45437 6.73855 6.85640 7.14926 7.31207 7.54633 8.86354 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.001489 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.313501 B =18804.866550 C =19072.044808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.491 3.509 14 O -0.589 6.589 15 C 0.061 3.939 16 N -0.693 5.693 17 C 0.061 3.939 18 C 0.125 3.875 19 N -0.707 5.707 20 C 0.539 3.461 21 O -0.584 6.584 22 C -0.179 4.179 23 H 0.147 0.853 24 C -0.107 4.107 25 C -0.198 4.198 26 H 0.136 0.864 27 C 0.292 3.708 28 F -0.218 7.218 29 F -0.209 7.209 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.109 0.891 34 H 0.074 0.926 35 H -0.006 1.006 36 H 0.021 0.979 37 H 0.265 0.735 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.344 0.656 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.420 0.580 46 H 0.136 0.864 47 H 0.110 0.890 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -13.938 32.192 35.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.138 3.862 5 C -0.569 4.569 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.280 3.720 14 O -0.469 6.469 15 C -0.071 4.071 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.000 4.000 19 N -0.359 5.359 20 C 0.326 3.674 21 O -0.464 6.464 22 C -0.200 4.200 23 H 0.165 0.835 24 C -0.144 4.144 25 C -0.217 4.217 26 H 0.154 0.846 27 C 0.239 3.761 28 F -0.199 7.199 29 F -0.190 7.190 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.012 0.988 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.257 0.743 46 H 0.154 0.846 47 H 0.129 0.871 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.979 -12.682 31.947 34.386 hybrid contribution -1.715 0.703 -1.144 2.179 sum -2.694 -11.978 30.803 33.159 Atomic orbital electron populations 1.22161 0.95563 1.02839 1.01581 1.21762 0.95129 0.80949 1.04018 1.48286 1.64104 1.15139 1.06126 1.18726 0.95369 0.91548 0.80515 1.21731 0.97901 1.31175 1.06139 0.92581 1.25853 0.99723 0.97138 0.96714 1.70061 1.29535 1.42573 1.14843 0.85415 0.79286 0.77975 0.78407 1.19065 1.21095 1.19535 1.21341 0.77414 0.86620 0.86646 1.90654 1.47887 1.20452 1.87941 1.21814 1.02422 0.96209 0.86605 1.59963 1.63891 1.07479 1.01221 1.22061 1.01256 0.97084 0.86397 1.21094 1.01328 0.95643 0.81914 1.45616 1.67457 1.18264 1.04594 1.20015 0.76188 0.85485 0.85722 1.90723 1.47722 1.19825 1.88169 1.22239 1.04869 1.04521 0.88403 0.83486 1.23201 0.93508 0.98992 0.98716 1.23555 1.03471 1.01034 0.93677 0.84625 1.21605 0.77664 0.79672 0.97179 1.92984 1.39875 1.93001 1.94062 1.92959 1.96053 1.37890 1.92117 0.92893 0.88916 0.94491 0.87296 0.90734 0.98799 0.96065 0.92586 0.89868 0.85474 0.83715 0.92278 0.88094 0.92229 0.92959 0.74255 0.84578 0.87138 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 10.24 71.98 0.74 -3.55 16 2 C 0.10 2.89 5.98 86.38 0.52 3.41 16 3 N -0.60 -24.75 2.46 -826.17 -2.03 -26.78 16 4 C 0.26 14.00 5.20 85.63 0.45 14.45 16 5 C -0.53 -30.36 8.92 25.60 0.23 -30.13 16 6 H 0.06 3.16 7.42 -2.91 -0.02 3.14 16 7 C 0.00 0.24 5.46 84.66 0.46 0.71 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.49 19.78 7.71 87.66 0.68 20.45 16 14 O -0.59 -30.67 15.78 -3.03 -0.05 -30.72 16 15 C 0.06 1.53 4.72 85.56 0.40 1.93 16 16 N -0.69 -17.53 6.13 -517.93 -3.17 -20.70 16 17 C 0.06 0.94 5.80 86.30 0.50 1.44 16 18 C 0.12 2.36 5.93 86.38 0.51 2.87 16 19 N -0.71 -9.94 5.56 -463.06 -2.57 -12.52 16 20 C 0.54 10.03 7.61 87.66 0.67 10.69 16 21 O -0.58 -16.55 16.26 -3.05 -0.05 -16.60 16 22 C -0.18 -2.06 5.84 -11.54 -0.07 -2.13 16 23 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 24 C -0.11 -0.84 9.62 30.59 0.29 -0.54 16 25 C -0.20 -2.09 5.67 -10.80 -0.06 -2.15 16 26 H 0.14 1.76 7.67 -2.39 -0.02 1.74 16 27 C 0.29 2.47 5.67 71.98 0.41 2.88 16 28 F -0.22 -3.18 17.29 44.97 0.78 -2.40 16 29 F -0.21 -2.14 15.91 44.97 0.72 -1.42 16 30 H 0.05 1.31 7.22 -2.39 -0.02 1.29 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.26 7.26 -2.38 -0.02 1.24 16 33 H 0.11 2.02 6.44 -2.39 -0.02 2.01 16 34 H 0.07 2.10 7.89 -2.39 -0.02 2.08 16 35 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 36 H 0.02 1.17 7.89 -2.39 -0.02 1.15 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.08 1.67 7.19 -2.39 -0.02 1.65 16 39 H 0.13 2.38 7.40 -2.39 -0.02 2.36 16 40 H 0.34 9.98 8.43 -89.69 -0.76 9.23 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.42 2.78 8.47 -92.71 -0.79 1.99 16 46 H 0.14 0.61 7.22 -2.39 -0.02 0.59 16 47 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -85.56 409.28 1.11 -84.45 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.54 Total: 15.52 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 5.72 Total: 20.33 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -7.49 Total: -116.48 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.10 Total: -47.32 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 1.49 Total: -3.82 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -85.56 1.11 -84.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126565176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.595 kcal (2) G-P(sol) polarization free energy of solvation -85.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds