Wall clock time and date at job start Wed Apr 1 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99943 * 2 1 4 4 O 1.21281 * 119.99693 * 4.86777 * 3 2 1 5 5 C 1.50699 * 120.00025 * 184.86390 * 3 2 1 6 6 C 1.50700 * 115.54668 * 65.85665 * 5 3 2 7 7 O 1.21280 * 119.99801 * 215.59279 * 6 5 3 8 8 N 1.34771 * 120.00230 * 35.59733 * 6 5 3 9 9 C 1.46500 * 120.00147 * 184.51326 * 8 6 5 10 10 C 1.50696 * 109.47481 * 179.97438 * 9 8 6 11 11 C 1.40077 * 126.12944 * 259.97789 * 10 9 8 12 12 N 1.31003 * 108.25540 * 180.02562 * 11 10 9 13 13 N 1.39746 * 108.18133 * 0.16511 * 12 11 10 14 14 C 1.34642 * 126.12574 * 79.99726 * 10 9 8 15 15 C 1.51038 * 127.90916 * 359.67113 * 14 10 9 16 16 N 1.47496 * 107.00147 * 169.45042 * 15 14 10 17 17 C 1.36941 * 121.01435 * 222.96583 * 16 15 14 18 18 H 1.07995 * 120.00479 * 160.06055 * 17 16 15 19 19 C 1.38817 * 119.99542 * 340.05307 * 17 16 15 20 20 N 1.31614 * 120.00387 * 343.15990 * 19 17 16 21 21 Si 1.86805 * 119.99578 * 163.16684 * 19 17 16 22 22 H 1.48491 * 109.47256 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47079 * 120.00135 * 21 19 17 24 24 H 1.48499 * 109.46419 * 239.99771 * 21 19 17 25 25 C 1.47084 * 117.97752 * 42.93278 * 16 15 14 26 26 C 1.46552 * 127.32354 * 179.44896 * 13 12 11 27 27 C 1.53000 * 117.51912 * 211.55289 * 5 3 2 28 28 C 1.52993 * 117.50051 * 280.18266 * 5 3 2 29 29 H 1.09001 * 109.47158 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47460 * 300.00229 * 1 2 3 31 31 H 1.08998 * 109.47231 * 60.00394 * 1 2 3 32 32 H 0.96993 * 120.00276 * 179.97438 * 2 1 3 33 33 H 0.97000 * 120.00057 * 4.51055 * 8 6 5 34 34 H 1.09001 * 109.47112 * 59.99955 * 9 8 6 35 35 H 1.09003 * 109.47179 * 299.99976 * 9 8 6 36 36 H 1.08000 * 125.86625 * 0.09563 * 11 10 9 37 37 H 1.09003 * 109.94829 * 288.82087 * 15 14 10 38 38 H 1.08999 * 109.94841 * 50.07222 * 15 14 10 39 39 H 0.96997 * 119.99947 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.51495 * 176.49829 * 25 16 15 41 41 H 1.09002 * 109.50111 * 56.34267 * 25 16 15 42 42 H 1.09007 * 109.50752 * 281.50508 * 26 13 12 43 43 H 1.09000 * 109.50929 * 41.63577 * 26 13 12 44 44 H 1.08997 * 117.50294 * 214.97315 * 27 5 3 45 45 H 1.09007 * 117.49532 * 359.97438 * 27 5 3 46 46 H 1.09001 * 117.49927 * 359.97438 * 28 5 3 47 47 H 1.09002 * 117.49966 * 144.97520 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5356 2.2156 0.0891 5 6 3.6418 1.1696 -0.1107 6 6 4.1979 0.6676 -1.4182 7 8 5.2326 0.0352 -1.4341 8 7 3.5456 0.9215 -2.5699 9 6 4.0318 0.3507 -3.8284 10 6 3.1318 0.7831 -4.9571 11 6 2.1133 0.0187 -5.5405 12 7 1.5557 0.7322 -6.4872 13 7 2.2028 1.9697 -6.5391 14 6 3.1630 1.9734 -5.5857 15 6 4.0812 3.1418 -5.3155 16 7 3.8975 4.0995 -6.4221 17 6 4.9709 4.7190 -7.0046 18 1 4.8757 5.1517 -7.9895 19 6 6.1814 4.7909 -6.3289 20 7 6.2247 4.5746 -5.0314 21 14 7.7489 5.1948 -7.2614 22 1 7.4329 5.3922 -8.6988 23 1 8.3465 6.4374 -6.7102 24 1 8.7135 4.0751 -7.1163 25 6 2.5264 4.3684 -6.8816 26 6 1.9223 3.0815 -7.4517 27 6 4.4007 2.2959 0.5939 28 6 4.4440 0.8744 1.1582 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 2.7541 1.4822 -2.5655 34 1 4.0296 -0.7371 -3.7588 35 1 5.0466 0.7005 -4.0180 36 1 1.8348 -0.9857 -5.2576 37 1 3.8157 3.6122 -4.3687 38 1 5.1164 2.8020 -5.2856 39 1 7.0707 4.6245 -4.5594 40 1 2.5455 5.1362 -7.6549 41 1 1.9219 4.7111 -6.0418 42 1 2.3660 2.8739 -8.4255 43 1 0.8443 3.2004 -7.5601 44 1 5.3023 2.6737 0.1118 45 1 3.8128 3.0357 1.1374 46 1 3.8848 0.6789 2.0731 47 1 5.3740 0.3167 1.0473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128517678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:23 Heat of formation + Delta-G solvation = 64.301502 kcal Electronic energy + Delta-G solvation = -31449.214516 eV Core-core repulsion = 27249.615715 eV Total energy + Delta-G solvation = -4199.598801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.04813 -40.63524 -38.90076 -36.39132 -36.14088 -34.80294 -34.72011 -33.01754 -31.29734 -30.24631 -29.02782 -27.73970 -26.26111 -25.34854 -23.90627 -23.35923 -22.57585 -21.81764 -21.51384 -20.19632 -19.75387 -18.63248 -18.15173 -16.74646 -16.41645 -16.17414 -15.94062 -15.80741 -15.23271 -15.04500 -14.92818 -14.71672 -14.37585 -14.09051 -13.84941 -13.62771 -13.36196 -13.22652 -12.98847 -12.98417 -12.64928 -12.53402 -12.47552 -11.73443 -11.71744 -11.63669 -11.30652 -11.21406 -11.02283 -10.88922 -10.72044 -10.68281 -10.27983 -10.17439 -10.14825 -10.05478 -9.69483 -9.37350 -8.93904 -8.82874 -8.55503 -7.94251 -7.13322 -6.00488 -3.40308 2.30106 2.40878 2.52288 2.85939 2.88419 2.99567 3.29304 3.37521 3.39114 3.50758 3.82591 4.31643 4.44943 4.61550 4.70525 4.77663 4.93905 4.98895 5.05474 5.20963 5.27179 5.36141 5.39686 5.48795 5.53644 5.54105 5.58736 5.61108 5.71023 5.77849 5.83733 5.99525 6.08404 6.12251 6.20656 6.35435 6.41454 6.52264 6.62005 6.93178 7.06544 7.17421 7.18672 7.56955 7.59675 7.66842 7.95838 8.07512 8.21793 8.30914 8.92279 9.55060 10.05762 11.10121 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010227 B = 0.003764 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.267569 B = 7436.572203 C = 8950.073210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.553 3.447 4 O -0.524 6.524 5 C -0.202 4.202 6 C 0.557 3.443 7 O -0.535 6.535 8 N -0.710 5.710 9 C 0.210 3.790 10 C -0.291 4.291 11 C 0.057 3.943 12 N -0.318 5.318 13 N -0.357 5.357 14 C 0.122 3.878 15 C 0.227 3.773 16 N -0.598 5.598 17 C -0.261 4.261 18 H 0.076 0.924 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.286 1.286 25 C 0.129 3.871 26 C 0.114 3.886 27 C -0.117 4.117 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.175 0.825 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -9.768 9.684 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.380 5.380 3 C 0.338 3.662 4 O -0.399 6.399 5 C -0.209 4.209 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.360 5.360 9 C 0.087 3.913 10 C -0.304 4.304 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.138 5.138 14 C -0.009 4.009 15 C 0.100 3.900 16 N -0.320 5.320 17 C -0.390 4.390 18 H 0.094 0.906 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.738 3.262 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.213 1.213 25 C 0.000 4.000 26 C -0.010 4.010 27 C -0.155 4.155 28 C -0.167 4.167 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.238 0.762 33 H 0.235 0.765 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.192 0.808 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.122 0.878 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.520 -9.286 8.729 15.908 hybrid contribution 1.021 -0.058 -0.018 1.023 sum -8.499 -9.344 8.711 15.344 Atomic orbital electron populations 1.21575 0.79154 1.02397 1.02523 1.45713 1.07820 1.08634 1.75792 1.19273 0.87304 0.83768 0.75880 1.90744 1.69510 1.31435 1.48240 1.21555 0.92060 1.11732 0.95557 1.18893 0.83938 0.79574 0.83507 1.90708 1.22837 1.40921 1.86795 1.46177 1.31178 1.51767 1.06836 1.19355 0.96199 0.96994 0.78731 1.19393 1.07343 0.96181 1.07440 1.23640 0.95072 0.99511 0.94808 1.77155 1.21602 0.92424 1.22577 1.48493 1.25969 1.11818 1.27561 1.22619 0.91357 0.98243 0.88714 1.20046 0.96913 0.82632 0.90395 1.44251 1.00548 1.47602 1.39606 1.19247 0.88654 1.32718 0.98335 0.90594 1.24957 0.98972 1.00229 0.95186 1.69949 1.25599 1.53240 1.06021 0.86133 0.83174 0.77721 0.79201 1.20233 1.21480 1.21272 1.21246 0.87508 0.92611 0.98619 1.22535 1.00848 0.85308 0.92318 1.23063 1.01006 0.91422 1.00008 1.23090 1.01354 0.99538 0.92738 0.90503 0.92108 0.91959 0.76180 0.76494 0.91215 0.90514 0.80834 0.92712 0.86474 0.93081 0.89690 0.94593 0.90565 0.90160 0.86792 0.86911 0.87781 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.71 59.84 0.64 1.33 16 2 N -0.73 -6.79 5.71 -67.08 -0.38 -7.18 16 3 C 0.55 6.99 6.33 -10.98 -0.07 6.92 16 4 O -0.52 -8.45 16.72 5.56 0.09 -8.36 16 5 C -0.20 -2.54 2.39 -156.82 -0.38 -2.92 16 6 C 0.56 8.37 7.37 -10.99 -0.08 8.29 16 7 O -0.54 -9.41 16.26 5.56 0.09 -9.32 16 8 N -0.71 -10.73 5.42 -61.47 -0.33 -11.06 16 9 C 0.21 3.36 5.96 -5.20 -0.03 3.33 16 10 C -0.29 -5.08 5.46 -105.21 -0.57 -5.65 16 11 C 0.06 0.92 11.97 -17.22 -0.21 0.71 16 12 N -0.32 -5.88 12.61 30.70 0.39 -5.50 16 13 N -0.36 -6.93 4.03 -56.98 -0.23 -7.16 16 14 C 0.12 2.46 6.71 -82.17 -0.55 1.91 16 15 C 0.23 5.19 5.17 -4.48 -0.02 5.17 16 16 N -0.60 -14.04 3.03 -173.03 -0.52 -14.56 16 17 C -0.26 -6.70 9.70 -15.06 -0.15 -6.85 16 18 H 0.08 1.89 7.87 -52.49 -0.41 1.48 16 19 C 0.01 0.14 5.01 -17.43 -0.09 0.05 16 20 N -0.90 -24.67 10.85 55.49 0.60 -24.07 16 21 Si 0.91 20.87 29.59 -169.99 -5.03 15.84 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.44 6.49 -3.64 -0.02 2.41 16 26 C 0.11 1.96 7.44 -3.93 -0.03 1.93 16 27 C -0.12 -1.39 9.76 -26.73 -0.26 -1.65 16 28 C -0.13 -1.30 9.75 -26.74 -0.26 -1.56 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 2.97 8.83 -40.82 -0.36 2.61 16 33 H 0.40 6.18 7.87 -40.82 -0.32 5.86 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.12 3.01 6.18 -51.93 -0.32 2.69 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.11 1.29 8.00 -51.92 -0.42 0.87 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.12 1.23 7.67 -51.93 -0.40 0.83 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -32.46 396.04 -8.29 -40.75 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.85 Total: 11.23 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -2.08 Total: 13.42 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.48 Total: -69.53 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.46 -8.29 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128517678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.047 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds