Wall clock time and date at job start Wed Apr 1 2020 04:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46755 * 2 1 4 4 C 1.46495 * 120.00183 * 270.00628 * 3 2 1 5 5 C 1.50709 * 109.46859 * 270.00071 * 4 3 2 6 6 H 1.07999 * 119.99849 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99789 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47185 * 119.99868 * 9 7 5 12 12 H 1.48501 * 109.47235 * 240.00007 * 9 7 5 13 13 C 1.34782 * 119.99582 * 90.00292 * 3 2 1 14 14 O 1.21279 * 119.99389 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99855 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46800 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00029 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47254 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 16 20 20 C 1.34777 * 120.00376 * 180.02562 * 19 18 17 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00115 * 180.02562 * 20 19 18 23 23 H 1.08995 * 112.84693 * 50.33049 * 22 20 19 24 24 C 1.53780 * 113.61349 * 181.52968 * 22 20 19 25 25 C 1.53778 * 87.08063 * 139.97898 * 24 22 20 26 26 C 1.53781 * 113.61132 * 279.13722 * 22 20 19 27 27 F 1.39896 * 113.61326 * 334.56257 * 26 22 20 28 28 F 1.39892 * 113.61325 * 105.47297 * 26 22 20 29 29 H 1.09003 * 109.47124 * 299.98963 * 1 2 3 30 30 H 1.08994 * 109.47738 * 60.00066 * 1 2 3 31 31 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46635 * 240.00894 * 2 1 3 33 33 H 1.08993 * 109.47227 * 120.00037 * 2 1 3 34 34 H 1.09004 * 109.47399 * 29.99565 * 4 3 2 35 35 H 1.09000 * 109.47338 * 150.00107 * 4 3 2 36 36 H 0.97001 * 120.00240 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47455 * 60.00021 * 15 13 3 38 38 H 1.09003 * 109.47449 * 299.99253 * 15 13 3 39 39 H 1.00902 * 111.00190 * 56.03702 * 16 15 13 40 40 H 1.09002 * 109.47043 * 299.99792 * 17 16 15 41 41 H 1.09001 * 109.47354 * 59.99854 * 17 16 15 42 42 H 1.09002 * 109.47153 * 300.00004 * 18 17 16 43 43 H 1.08998 * 109.47533 * 59.99633 * 18 17 16 44 44 H 0.97004 * 119.99396 * 0.02562 * 19 18 17 45 45 H 1.08999 * 113.61559 * 254.52840 * 24 22 20 46 46 H 1.09007 * 113.61618 * 25.43151 * 24 22 20 47 47 H 1.08995 * 113.61544 * 89.11553 * 25 24 22 48 48 H 1.09002 * 113.61278 * 219.93116 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1269 -3.6175 9 14 5.9135 2.0979 -3.4165 10 1 6.6013 1.2427 -2.4161 11 1 5.9214 1.4195 -4.7374 12 1 6.6207 3.3993 -3.5242 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9924 1.3058 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0776 1.5454 4.8802 18 6 2.4190 2.5116 6.0162 19 7 2.1869 1.8530 7.3040 20 6 2.4212 2.5176 8.4529 21 8 2.8240 3.6612 8.4205 22 6 2.1829 1.8398 9.7776 23 1 2.6580 0.8610 9.8437 24 6 2.4615 2.7430 10.9906 25 6 1.2123 2.1238 11.6393 26 6 0.7080 1.8393 10.2128 27 9 -0.0387 2.8870 9.6632 28 9 0.0836 0.5950 10.0755 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0953 3.1412 -1.1383 36 1 3.6751 3.5174 -4.4434 37 1 2.6229 0.4187 2.5298 38 1 0.9445 1.0113 2.5303 39 1 1.7842 3.0647 3.5219 40 1 1.0306 1.2517 4.9549 41 1 2.7094 0.6602 4.9543 42 1 3.4662 2.8050 5.9413 43 1 1.7876 3.3970 5.9424 44 1 1.8644 0.9385 7.3298 45 1 3.3886 2.5020 11.5108 46 1 2.3600 3.8068 10.7755 47 1 1.4207 1.2221 12.2151 48 1 0.6019 2.8430 12.1854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130101621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:54 Heat of formation + Delta-G solvation = -145.262918 kcal Electronic energy + Delta-G solvation = -30093.325909 eV Core-core repulsion = 25433.950527 eV Total energy + Delta-G solvation = -4659.375383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.38668 -47.71228 -40.41995 -39.16257 -37.73502 -36.49920 -35.28163 -34.44871 -32.77646 -30.26788 -30.01352 -28.05978 -26.98790 -25.58665 -25.09436 -23.03896 -22.61102 -22.13186 -21.58516 -20.40910 -18.65014 -18.37447 -17.98723 -17.00722 -16.86728 -16.57013 -16.39063 -16.25719 -16.07369 -15.54779 -15.01280 -14.85304 -14.56089 -14.36494 -14.30859 -14.17083 -13.95293 -13.82951 -13.52543 -13.46253 -13.37594 -12.84065 -12.70433 -12.33788 -12.15334 -12.04704 -11.97469 -11.78376 -11.72424 -11.68481 -11.50784 -11.39386 -11.19021 -10.89110 -10.73268 -10.53346 -10.23849 -10.11315 -9.59905 -9.45248 -8.93327 -8.45408 -8.42127 -7.65246 -6.02746 -4.07153 1.97194 2.57226 2.89601 3.15135 3.31216 3.38089 3.40615 3.45852 3.60470 3.70202 3.75738 3.85432 4.30471 4.40194 4.48141 4.61001 4.68692 4.82300 4.85279 4.87354 4.99897 5.05854 5.19193 5.20671 5.24389 5.31981 5.36533 5.54705 5.55410 5.62278 5.65234 5.73005 5.74991 5.97539 6.00653 6.20758 6.44293 6.73989 7.01985 7.10670 7.28924 7.45791 7.56570 7.75354 7.94089 8.25328 8.43154 8.92621 9.11758 9.58061 11.05346 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.923342 B =16524.574577 C =17310.170145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.668 5.668 17 C 0.051 3.949 18 C 0.118 3.882 19 N -0.724 5.724 20 C 0.523 3.477 21 O -0.521 6.521 22 C -0.167 4.167 23 H 0.143 0.857 24 C -0.112 4.112 25 C -0.164 4.164 26 C 0.269 3.731 27 F -0.170 7.170 28 F -0.186 7.186 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.354 0.646 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.401 0.599 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 -9.698 30.116 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.079 4.079 18 C -0.005 4.005 19 N -0.376 5.376 20 C 0.307 3.693 21 O -0.396 6.396 22 C -0.189 4.189 23 H 0.160 0.840 24 C -0.150 4.150 25 C -0.202 4.202 26 C 0.232 3.768 27 F -0.151 7.151 28 F -0.167 7.167 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.174 0.826 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.235 0.765 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.134 0.866 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.380 -8.270 29.832 31.607 hybrid contribution -0.411 -0.888 -0.633 1.165 sum -6.790 -9.158 29.198 31.345 Atomic orbital electron populations 1.22226 0.96900 1.01358 1.02244 1.21403 0.93385 0.84345 1.02649 1.48254 1.63979 1.13212 1.07697 1.19266 0.96282 0.93629 0.78064 1.21480 0.96921 1.31755 1.06164 0.92399 1.24940 0.97864 0.94946 0.96444 1.69941 1.35596 1.33551 1.14351 0.86441 0.84673 0.78071 0.78222 1.19802 1.21031 1.20874 1.20139 0.78984 0.87148 0.84849 1.90687 1.44767 1.17961 1.86886 1.21900 0.99995 0.96607 0.90391 1.59930 1.63331 1.07319 0.99604 1.22068 0.99368 0.97401 0.89090 1.21326 1.03178 0.95559 0.80445 1.45885 1.68075 1.17634 1.05957 1.19928 0.77948 0.86592 0.84805 1.90754 1.44463 1.17185 1.87163 1.24132 0.95233 1.04122 0.95444 0.83959 1.22764 0.98768 1.00773 0.92704 1.24103 0.97943 1.04084 0.94039 1.22022 0.85308 0.72681 0.96772 1.93081 1.78489 1.56493 1.87019 1.93044 1.85087 1.41850 1.96698 0.93277 0.91985 0.92198 0.89894 0.91880 0.95049 0.93919 0.92807 0.88585 0.92854 0.82618 0.94700 0.90252 0.89803 0.91085 0.76498 0.88389 0.87237 0.86580 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.52 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.50 10.29 7.71 -10.99 -0.08 10.21 16 14 O -0.53 -13.29 15.78 5.56 0.09 -13.20 16 15 C 0.04 0.62 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.16 6.12 -115.06 -0.70 -9.87 16 17 C 0.05 0.48 5.80 -3.83 -0.02 0.46 16 18 C 0.12 1.21 5.93 -4.04 -0.02 1.18 16 19 N -0.72 -6.01 5.56 -60.29 -0.33 -6.34 16 20 C 0.52 5.09 6.80 -10.98 -0.07 5.02 16 21 O -0.52 -7.19 15.91 5.55 0.09 -7.10 16 22 C -0.17 -0.99 4.03 -90.96 -0.37 -1.36 16 23 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 24 C -0.11 -0.56 7.38 -25.92 -0.19 -0.75 16 25 C -0.16 -0.62 7.88 -25.83 -0.20 -0.82 16 26 C 0.27 1.81 3.11 -25.83 -0.08 1.73 16 27 F -0.17 -1.67 16.70 2.25 0.04 -1.63 16 28 F -0.19 -1.36 17.41 2.25 0.04 -1.32 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.10 1.23 7.40 -51.93 -0.38 0.85 16 38 H 0.05 0.63 7.19 -51.93 -0.37 0.26 16 39 H 0.35 5.07 8.43 -39.29 -0.33 4.73 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 45 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.11 0.77 7.45 -51.92 -0.39 0.38 16 47 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -36.83 407.32 -8.05 -44.88 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.53 Total: 1.38 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.16 Total: 8.85 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.73 Total: -55.08 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.83 -8.05 -44.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130101621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.385 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds