Wall clock time and date at job start Wed Apr 1 2020 04:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46755 * 2 1 4 4 C 1.46495 * 120.00183 * 270.00628 * 3 2 1 5 5 C 1.50709 * 109.46859 * 270.00071 * 4 3 2 6 6 H 1.07999 * 119.99849 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99789 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47185 * 119.99868 * 9 7 5 12 12 H 1.48501 * 109.47235 * 240.00007 * 9 7 5 13 13 C 1.34782 * 119.99582 * 90.00292 * 3 2 1 14 14 O 1.21279 * 119.99389 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99855 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46800 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00029 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47254 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 16 20 20 C 1.34777 * 120.00376 * 180.02562 * 19 18 17 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00115 * 180.02562 * 20 19 18 23 23 H 1.08995 * 112.84693 * 50.33049 * 22 20 19 24 24 C 1.53780 * 113.61349 * 181.52968 * 22 20 19 25 25 C 1.53778 * 87.08063 * 139.97898 * 24 22 20 26 26 C 1.53781 * 113.61132 * 279.13722 * 22 20 19 27 27 F 1.39896 * 113.61326 * 334.56257 * 26 22 20 28 28 F 1.39892 * 113.61325 * 105.47297 * 26 22 20 29 29 H 1.09003 * 109.47124 * 299.98963 * 1 2 3 30 30 H 1.08994 * 109.47738 * 60.00066 * 1 2 3 31 31 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46635 * 240.00894 * 2 1 3 33 33 H 1.08993 * 109.47227 * 120.00037 * 2 1 3 34 34 H 1.09004 * 109.47399 * 29.99565 * 4 3 2 35 35 H 1.09000 * 109.47338 * 150.00107 * 4 3 2 36 36 H 0.97001 * 120.00240 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47455 * 60.00021 * 15 13 3 38 38 H 1.09003 * 109.47449 * 299.99253 * 15 13 3 39 39 H 1.00902 * 111.00190 * 56.03702 * 16 15 13 40 40 H 1.09002 * 109.47043 * 299.99792 * 17 16 15 41 41 H 1.09001 * 109.47354 * 59.99854 * 17 16 15 42 42 H 1.09002 * 109.47153 * 300.00004 * 18 17 16 43 43 H 1.08998 * 109.47533 * 59.99633 * 18 17 16 44 44 H 0.97004 * 119.99396 * 0.02562 * 19 18 17 45 45 H 1.08999 * 113.61559 * 254.52840 * 24 22 20 46 46 H 1.09007 * 113.61618 * 25.43151 * 24 22 20 47 47 H 1.08995 * 113.61544 * 89.11553 * 25 24 22 48 48 H 1.09002 * 113.61278 * 219.93116 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1269 -3.6175 9 14 5.9135 2.0979 -3.4165 10 1 6.6013 1.2427 -2.4161 11 1 5.9214 1.4195 -4.7374 12 1 6.6207 3.3993 -3.5242 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9924 1.3058 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0776 1.5454 4.8802 18 6 2.4190 2.5116 6.0162 19 7 2.1869 1.8530 7.3040 20 6 2.4212 2.5176 8.4529 21 8 2.8240 3.6612 8.4205 22 6 2.1829 1.8398 9.7776 23 1 2.6580 0.8610 9.8437 24 6 2.4615 2.7430 10.9906 25 6 1.2123 2.1238 11.6393 26 6 0.7080 1.8393 10.2128 27 9 -0.0387 2.8870 9.6632 28 9 0.0836 0.5950 10.0755 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0953 3.1412 -1.1383 36 1 3.6751 3.5174 -4.4434 37 1 2.6229 0.4187 2.5298 38 1 0.9445 1.0113 2.5303 39 1 1.7842 3.0647 3.5219 40 1 1.0306 1.2517 4.9549 41 1 2.7094 0.6602 4.9543 42 1 3.4662 2.8050 5.9413 43 1 1.7876 3.3970 5.9424 44 1 1.8644 0.9385 7.3298 45 1 3.3886 2.5020 11.5108 46 1 2.3600 3.8068 10.7755 47 1 1.4207 1.2221 12.2151 48 1 0.6019 2.8430 12.1854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130101621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:45 Heat of formation + Delta-G solvation = -173.497808 kcal Electronic energy + Delta-G solvation = -30094.550266 eV Core-core repulsion = 25433.950527 eV Total energy + Delta-G solvation = -4660.599739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.94169 -48.27601 -41.14030 -40.71945 -38.30605 -37.47079 -36.85289 -35.44722 -34.85735 -31.69016 -31.06297 -29.37506 -28.09342 -26.43437 -25.97922 -24.63696 -23.86019 -23.21157 -22.25609 -20.95152 -19.96230 -19.15356 -18.66890 -18.56229 -17.89726 -17.69435 -17.47743 -17.37558 -16.90008 -16.81642 -16.31307 -16.03418 -15.66588 -15.44833 -15.10919 -14.88638 -14.80027 -14.64289 -14.54486 -14.49685 -14.45628 -14.01265 -13.94076 -13.71111 -13.38347 -13.21876 -13.05852 -12.78712 -12.68483 -12.65463 -12.53883 -12.47864 -12.39517 -12.16241 -12.15571 -11.89769 -11.84897 -11.68105 -10.98271 -10.65358 -10.56524 -10.25825 -9.50730 -9.37249 -8.22618 -6.37261 1.27586 1.35161 1.38338 1.49830 1.83391 1.87870 2.30058 2.41846 2.44855 2.71816 3.06700 3.10437 3.22019 3.37889 3.45118 3.70406 3.78535 3.93884 4.06356 4.12365 4.29493 4.30257 4.40178 4.44806 4.45911 4.49137 4.50082 4.66240 4.74866 4.83771 4.87019 4.92331 4.95074 5.00049 5.06173 5.16937 5.22093 5.26815 5.39779 5.58568 5.80846 5.91784 6.07034 6.21567 6.36454 6.71396 6.83946 7.06664 7.29070 7.52877 8.84427 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.923342 B =16524.574577 C =17310.170145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.491 3.509 14 O -0.589 6.589 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.061 3.939 18 C 0.124 3.876 19 N -0.711 5.711 20 C 0.514 3.486 21 O -0.571 6.571 22 C -0.159 4.159 23 H 0.180 0.820 24 C -0.115 4.115 25 C -0.146 4.146 26 C 0.253 3.747 27 F -0.195 7.195 28 F -0.189 7.189 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.022 0.978 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.346 0.654 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.418 0.582 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.147 0.853 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -13.343 32.416 35.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.279 3.721 14 O -0.469 6.469 15 C -0.070 4.070 16 N -0.327 5.327 17 C -0.068 4.068 18 C -0.001 4.001 19 N -0.364 5.364 20 C 0.301 3.699 21 O -0.449 6.449 22 C -0.181 4.181 23 H 0.197 0.803 24 C -0.153 4.153 25 C -0.183 4.183 26 C 0.217 3.783 27 F -0.176 7.176 28 F -0.170 7.170 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.040 0.960 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.165 0.835 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.255 0.745 45 H 0.140 0.860 46 H 0.100 0.900 47 H 0.165 0.835 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.233 -12.015 32.154 34.887 hybrid contribution -0.518 0.254 -1.347 1.466 sum -6.752 -11.761 30.807 33.659 Atomic orbital electron populations 1.22156 0.94646 1.03498 1.01572 1.21763 0.95207 0.81266 1.04071 1.48283 1.64028 1.15185 1.06115 1.18679 0.95227 0.91456 0.80600 1.21756 0.97933 1.31803 1.06396 0.92849 1.25880 1.02431 0.94540 0.96536 1.70060 1.37693 1.34321 1.14835 0.85360 0.79012 0.77961 0.78417 1.19057 1.19310 1.20948 1.21344 0.77377 0.86711 0.86645 1.90652 1.47452 1.20875 1.87933 1.21800 1.02528 0.96058 0.86585 1.59902 1.64076 1.07531 1.01156 1.22052 1.01206 0.97049 0.86444 1.21106 1.01405 0.95638 0.81907 1.45779 1.67336 1.18250 1.05020 1.20689 0.76802 0.86166 0.86285 1.90733 1.46771 1.19462 1.87984 1.24312 0.95026 1.05613 0.93106 0.80300 1.22764 1.00627 0.99184 0.92710 1.24139 0.96496 1.05267 0.92402 1.22515 0.85047 0.71998 0.98777 1.93031 1.79187 1.57740 1.87621 1.93036 1.85194 1.41867 1.96854 0.92112 0.94557 0.88542 0.91101 0.87805 0.96034 0.98796 0.92468 0.86084 0.89323 0.83547 0.92267 0.88268 0.92053 0.92964 0.74520 0.85996 0.89996 0.83519 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.85 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.25 2.46 -826.14 -2.03 -27.28 16 4 C 0.26 14.33 5.16 85.64 0.44 14.77 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.00 0.28 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.19 13.29 21.44 0.28 -56.91 16 9 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.49 20.15 7.71 87.65 0.68 20.83 16 14 O -0.59 -31.09 15.78 -3.03 -0.05 -31.14 16 15 C 0.06 1.60 4.72 85.55 0.40 2.00 16 16 N -0.69 -18.17 6.12 -517.93 -3.17 -21.34 16 17 C 0.06 1.02 5.80 86.30 0.50 1.52 16 18 C 0.12 2.49 5.93 86.38 0.51 3.00 16 19 N -0.71 -10.88 5.56 -463.06 -2.57 -13.45 16 20 C 0.51 9.75 6.80 87.66 0.60 10.35 16 21 O -0.57 -16.42 15.91 -3.05 -0.05 -16.47 16 22 C -0.16 -1.56 4.03 -11.01 -0.04 -1.61 16 23 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 24 C -0.12 -0.96 7.38 31.12 0.23 -0.73 16 25 C -0.15 -0.72 7.88 31.18 0.25 -0.47 16 26 C 0.25 2.96 3.11 31.18 0.10 3.06 16 27 F -0.19 -3.80 16.70 44.97 0.75 -3.04 16 28 F -0.19 -2.29 17.41 44.97 0.78 -1.51 16 29 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 33 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 34 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 35 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.12 2.57 7.40 -2.39 -0.02 2.55 16 38 H 0.09 1.71 7.19 -2.39 -0.02 1.69 16 39 H 0.35 10.00 8.43 -89.69 -0.76 9.25 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.42 3.47 8.47 -92.71 -0.79 2.69 16 45 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.08 1.17 7.45 -2.38 -0.02 1.16 16 47 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -87.64 407.32 1.03 -86.60 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.55 Total: 14.28 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 5.61 Total: 22.43 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -7.49 Total: -118.97 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.10 Total: -47.61 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.53 Total: -4.56 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -87.64 1.03 -86.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130101621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.895 kcal (2) G-P(sol) polarization free energy of solvation -87.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds