Wall clock time and date at job start Wed Apr 1 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34251 * 125.75311 * 2 1 4 4 C 1.38041 * 107.41531 * 179.97438 * 3 2 1 5 5 C 1.47439 * 126.41582 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99598 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00052 * 180.02562 * 5 4 3 8 8 C 1.47292 * 135.91384 * 179.97438 * 7 5 4 9 9 C 1.52280 * 87.74106 * 206.07407 * 8 7 5 10 10 C 1.47295 * 135.91694 * 0.03451 * 7 5 4 11 11 C 1.53131 * 116.37151 * 91.54500 * 9 8 7 12 12 C 1.54690 * 104.56120 * 130.98289 * 11 9 8 13 13 N 1.48667 * 104.66061 * 23.68540 * 12 11 9 14 14 C 1.46893 * 110.99776 * 201.53136 * 13 12 11 15 15 C 1.50698 * 109.47211 * 290.12244 * 14 13 12 16 16 O 1.21287 * 120.00301 * 0.02562 * 15 14 13 17 17 N 1.34786 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99665 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00227 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99799 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99822 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47479 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47142 * 120.00083 * 22 20 18 25 25 H 1.48495 * 109.47340 * 240.00062 * 22 20 18 26 26 C 1.48849 * 104.43322 * 321.21419 * 13 12 11 27 27 C 1.41288 * 107.17242 * 0.24329 * 4 3 2 28 28 N 1.30444 * 108.02168 * 359.58823 * 27 4 3 29 29 H 1.08998 * 109.46664 * 90.00481 * 1 2 3 30 30 H 1.08995 * 109.47265 * 209.99897 * 1 2 3 31 31 H 1.09000 * 109.47006 * 330.00516 * 1 2 3 32 32 H 1.08004 * 126.29192 * 359.97438 * 3 2 1 33 33 H 1.09002 * 113.52131 * 320.80752 * 8 7 5 34 34 H 1.08999 * 113.51602 * 91.34435 * 8 7 5 35 35 H 1.09002 * 113.51625 * 268.59119 * 10 7 5 36 36 H 1.08992 * 113.52060 * 39.12310 * 10 7 5 37 37 H 1.08999 * 110.41534 * 249.75020 * 11 9 8 38 38 H 1.08999 * 110.41873 * 12.21817 * 11 9 8 39 39 H 1.09006 * 110.39914 * 142.47382 * 12 11 9 40 40 H 1.09000 * 110.40411 * 264.88472 * 12 11 9 41 41 H 1.09000 * 109.47444 * 50.12386 * 14 13 12 42 42 H 1.09007 * 109.47201 * 170.12506 * 14 13 12 43 43 H 0.96993 * 120.00285 * 0.02562 * 17 15 14 44 44 H 0.96998 * 120.00385 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.46815 * 279.67257 * 26 13 12 46 46 H 1.08998 * 110.47331 * 157.06811 * 26 13 12 47 47 H 1.08005 * 125.99090 * 179.73240 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5061 0.0003 6 8 4.6526 2.7170 -0.0001 7 7 5.9878 0.9417 0.0004 8 6 7.3777 1.4294 -0.0003 9 6 7.7734 0.1193 -0.6682 10 6 6.5196 -0.4319 0.0002 11 6 7.7856 0.1131 -2.1994 12 6 9.1526 -0.5060 -2.5749 13 7 9.5383 -1.3143 -1.3883 14 6 10.9883 -1.5470 -1.3587 15 6 11.3686 -2.4901 -2.4709 16 8 10.5156 -2.9252 -3.2153 17 7 12.6566 -2.8502 -2.6384 18 6 13.0025 -3.7077 -3.6505 19 1 12.2429 -4.0951 -4.3134 20 6 14.3305 -4.0785 -3.8235 21 7 15.2548 -3.6067 -3.0173 22 14 14.8017 -5.2475 -5.2021 23 1 13.5857 -5.6313 -5.9631 24 1 15.7637 -4.5766 -6.1129 25 1 15.4305 -6.4635 -4.6268 26 6 9.1057 -0.4939 -0.2241 27 6 3.5311 -0.7574 -0.0048 28 7 2.2827 -1.1357 0.0006 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9165 2.1169 -0.0004 33 1 7.5316 2.3038 -0.6325 34 1 7.7961 1.5520 0.9988 35 1 6.6993 -0.8288 0.9994 36 1 5.9538 -1.1173 -0.6307 37 1 6.9715 -0.5015 -2.5837 38 1 7.7102 1.1300 -2.5845 39 1 9.0523 -1.1442 -3.4530 40 1 9.8879 0.2780 -2.7560 41 1 11.5112 -0.5998 -1.4909 42 1 11.2666 -1.9849 -0.4000 43 1 13.3387 -2.5026 -2.0429 44 1 16.1817 -3.8658 -3.1378 45 1 9.8355 0.2889 -0.0172 46 1 8.9617 -1.1238 0.6537 47 1 4.3919 -1.4097 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146966352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:01 Heat of formation + Delta-G solvation = 69.082195 kcal Electronic energy + Delta-G solvation = -29675.565297 eV Core-core repulsion = 25476.173803 eV Total energy + Delta-G solvation = -4199.391495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.77815 -40.95424 -38.74872 -37.97974 -36.35123 -33.90792 -33.82422 -31.66556 -31.13613 -30.66463 -29.47250 -27.93708 -27.10479 -26.27499 -25.28141 -23.96451 -22.44387 -21.43657 -21.29055 -19.79189 -19.32448 -18.71406 -17.82967 -17.72968 -16.52713 -16.23588 -16.09389 -15.91588 -15.68559 -15.15702 -15.01307 -14.71536 -14.49522 -14.29407 -13.89626 -13.76266 -13.70321 -13.37287 -13.18799 -13.08117 -12.95610 -12.91440 -12.37143 -12.15947 -11.90555 -11.52798 -11.47675 -11.45746 -11.19583 -11.10098 -11.07103 -10.79043 -10.39542 -10.32807 -10.20983 -9.99074 -9.96782 -9.48609 -9.15021 -8.78551 -8.49277 -8.01452 -7.92670 -6.40222 -3.80745 1.18542 1.86191 1.93190 2.66211 3.17392 3.24816 3.27965 3.35088 3.84642 3.93303 3.97561 4.14675 4.32140 4.36250 4.41105 4.46252 4.61436 4.65832 4.79616 4.88397 4.89263 5.07619 5.10422 5.13523 5.19540 5.25846 5.28239 5.35268 5.43099 5.53582 5.59857 5.67810 5.73505 5.81745 5.85098 5.89770 5.99264 6.08365 6.18489 6.29238 6.38750 6.46423 7.10529 7.15726 7.20990 7.55906 7.56960 8.06056 8.08296 8.63802 9.20235 9.56670 10.08599 10.77695 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.001816 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.362401 B =15415.896338 C =16175.881622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.127 3.873 4 C -0.288 4.288 5 C 0.625 3.375 6 O -0.555 6.555 7 N -0.641 5.641 8 C 0.120 3.880 9 C -0.097 4.097 10 C 0.112 3.888 11 C -0.095 4.095 12 C 0.038 3.962 13 N -0.483 5.483 14 C 0.034 3.966 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.047 3.953 27 C 0.080 3.920 28 N -0.297 5.297 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.270 0.730 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 10.721 10.156 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 C -0.025 4.025 4 C -0.303 4.303 5 C 0.417 3.583 6 O -0.434 6.434 7 N -0.375 5.375 8 C -0.002 4.002 9 C -0.098 4.098 10 C -0.011 4.011 11 C -0.133 4.133 12 C -0.090 4.090 13 N -0.207 5.207 14 C -0.098 4.098 15 C 0.231 3.769 16 O -0.461 6.461 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.082 4.082 27 C -0.107 4.107 28 N -0.117 5.117 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.205 0.795 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -24.962 9.581 9.643 28.423 hybrid contribution 1.800 1.058 -0.162 2.094 sum -23.161 10.639 9.481 27.194 Atomic orbital electron populations 1.22011 0.73364 1.05035 1.04042 1.48463 1.07326 1.03898 1.54695 1.22948 0.90038 0.93756 0.95756 1.20150 0.93081 0.93568 1.23523 1.16662 0.80369 0.86175 0.75110 1.90770 1.85994 1.14145 1.52468 1.49346 1.04404 1.10181 1.73582 1.22921 0.79005 0.97526 1.00797 1.22092 0.94911 0.95788 0.97009 1.23181 0.91851 0.85118 1.00945 1.22001 0.98642 1.01064 0.91623 1.23250 0.94386 0.95514 0.95824 1.65208 1.13524 1.40641 1.01319 1.22064 0.88580 0.98967 1.00144 1.19704 0.83454 0.86149 0.87625 1.90505 1.49149 1.58522 1.47923 1.41868 1.06368 1.42222 1.29855 1.19743 0.93260 1.21526 1.08134 0.87880 1.25249 0.95443 0.98623 0.98687 1.69615 1.01729 1.44944 1.38113 0.85813 0.78642 0.79558 0.80408 1.19239 1.20829 1.20781 1.22885 0.93909 0.95840 0.95575 1.24432 0.95402 0.94116 0.96760 1.77242 1.01985 1.07677 1.24791 0.90088 0.88748 0.88990 0.79458 0.90127 0.89483 0.89048 0.89657 0.90471 0.91073 0.88130 0.94296 0.93197 0.89232 0.77533 0.91975 0.93079 0.89517 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.44 59.85 0.68 1.02 16 2 N -0.37 -3.01 3.98 -67.60 -0.27 -3.27 16 3 C 0.13 1.11 11.30 -16.57 -0.19 0.92 16 4 C -0.29 -3.11 6.13 -105.06 -0.64 -3.75 16 5 C 0.63 7.88 8.06 -12.51 -0.10 7.78 16 6 O -0.55 -8.70 17.67 5.28 0.09 -8.61 16 7 N -0.64 -6.81 3.68 -186.25 -0.69 -7.50 16 8 C 0.12 1.14 7.92 -7.77 -0.06 1.07 16 9 C -0.10 -0.95 1.29 -155.00 -0.20 -1.15 16 10 C 0.11 0.98 6.35 -7.71 -0.05 0.93 16 11 C -0.10 -1.11 6.52 -25.77 -0.17 -1.27 16 12 C 0.04 0.57 5.83 -1.96 -0.01 0.55 16 13 N -0.48 -7.40 5.06 -231.59 -1.17 -8.57 16 14 C 0.03 0.58 5.30 -4.98 -0.03 0.55 16 15 C 0.45 10.25 7.59 -10.98 -0.08 10.16 16 16 O -0.58 -15.23 14.43 5.55 0.08 -15.15 16 17 N -0.57 -14.12 5.29 -10.96 -0.06 -14.17 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 22 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.05 0.50 5.95 -2.62 -0.02 0.49 16 27 C 0.08 0.81 11.14 -16.98 -0.19 0.62 16 28 N -0.30 -3.18 12.50 30.86 0.39 -2.79 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.19 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.64 7.99 -51.93 -0.42 0.23 16 36 H 0.09 0.72 5.99 -51.93 -0.31 0.41 16 37 H 0.08 0.91 7.84 -51.93 -0.41 0.51 16 38 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 39 H 0.10 1.82 6.93 -51.93 -0.36 1.46 16 40 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 41 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 42 H 0.09 1.36 8.13 -51.92 -0.42 0.94 16 43 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.05 0.51 7.98 -51.93 -0.41 0.09 16 46 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 47 H 0.19 1.57 5.21 -52.48 -0.27 1.30 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -36.16 389.89 -7.93 -44.09 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.59 Total: 7.77 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.29 Total: 10.06 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.08 Total: -59.97 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.16 -7.93 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146966352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.175 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds