Wall clock time and date at job start Wed Apr 1 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34251 * 125.75311 * 2 1 4 4 C 1.38041 * 107.41531 * 179.97438 * 3 2 1 5 5 C 1.47439 * 126.41582 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99598 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00052 * 180.02562 * 5 4 3 8 8 C 1.47292 * 135.91384 * 179.97438 * 7 5 4 9 9 C 1.52280 * 87.74106 * 206.07407 * 8 7 5 10 10 C 1.47295 * 135.91694 * 0.03451 * 7 5 4 11 11 C 1.53131 * 116.37151 * 91.54500 * 9 8 7 12 12 C 1.54690 * 104.56120 * 130.98289 * 11 9 8 13 13 N 1.48667 * 104.66061 * 23.68540 * 12 11 9 14 14 C 1.46893 * 110.99776 * 201.53136 * 13 12 11 15 15 C 1.50698 * 109.47211 * 290.12244 * 14 13 12 16 16 O 1.21287 * 120.00301 * 0.02562 * 15 14 13 17 17 N 1.34786 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99665 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00227 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99799 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99822 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47479 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47142 * 120.00083 * 22 20 18 25 25 H 1.48495 * 109.47340 * 240.00062 * 22 20 18 26 26 C 1.48849 * 104.43322 * 321.21419 * 13 12 11 27 27 C 1.41288 * 107.17242 * 0.24329 * 4 3 2 28 28 N 1.30444 * 108.02168 * 359.58823 * 27 4 3 29 29 H 1.08998 * 109.46664 * 90.00481 * 1 2 3 30 30 H 1.08995 * 109.47265 * 209.99897 * 1 2 3 31 31 H 1.09000 * 109.47006 * 330.00516 * 1 2 3 32 32 H 1.08004 * 126.29192 * 359.97438 * 3 2 1 33 33 H 1.09002 * 113.52131 * 320.80752 * 8 7 5 34 34 H 1.08999 * 113.51602 * 91.34435 * 8 7 5 35 35 H 1.09002 * 113.51625 * 268.59119 * 10 7 5 36 36 H 1.08992 * 113.52060 * 39.12310 * 10 7 5 37 37 H 1.08999 * 110.41534 * 249.75020 * 11 9 8 38 38 H 1.08999 * 110.41873 * 12.21817 * 11 9 8 39 39 H 1.09006 * 110.39914 * 142.47382 * 12 11 9 40 40 H 1.09000 * 110.40411 * 264.88472 * 12 11 9 41 41 H 1.09000 * 109.47444 * 50.12386 * 14 13 12 42 42 H 1.09007 * 109.47201 * 170.12506 * 14 13 12 43 43 H 0.96993 * 120.00285 * 0.02562 * 17 15 14 44 44 H 0.96998 * 120.00385 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.46815 * 279.67257 * 26 13 12 46 46 H 1.08998 * 110.47331 * 157.06811 * 26 13 12 47 47 H 1.08005 * 125.99090 * 179.73240 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5061 0.0003 6 8 4.6526 2.7170 -0.0001 7 7 5.9878 0.9417 0.0004 8 6 7.3777 1.4294 -0.0003 9 6 7.7734 0.1193 -0.6682 10 6 6.5196 -0.4319 0.0002 11 6 7.7856 0.1131 -2.1994 12 6 9.1526 -0.5060 -2.5749 13 7 9.5383 -1.3143 -1.3883 14 6 10.9883 -1.5470 -1.3587 15 6 11.3686 -2.4901 -2.4709 16 8 10.5156 -2.9252 -3.2153 17 7 12.6566 -2.8502 -2.6384 18 6 13.0025 -3.7077 -3.6505 19 1 12.2429 -4.0951 -4.3134 20 6 14.3305 -4.0785 -3.8235 21 7 15.2548 -3.6067 -3.0173 22 14 14.8017 -5.2475 -5.2021 23 1 13.5857 -5.6313 -5.9631 24 1 15.7637 -4.5766 -6.1129 25 1 15.4305 -6.4635 -4.6268 26 6 9.1057 -0.4939 -0.2241 27 6 3.5311 -0.7574 -0.0048 28 7 2.2827 -1.1357 0.0006 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9165 2.1169 -0.0004 33 1 7.5316 2.3038 -0.6325 34 1 7.7961 1.5520 0.9988 35 1 6.6993 -0.8288 0.9994 36 1 5.9538 -1.1173 -0.6307 37 1 6.9715 -0.5015 -2.5837 38 1 7.7102 1.1300 -2.5845 39 1 9.0523 -1.1442 -3.4530 40 1 9.8879 0.2780 -2.7560 41 1 11.5112 -0.5998 -1.4909 42 1 11.2666 -1.9849 -0.4000 43 1 13.3387 -2.5026 -2.0429 44 1 16.1817 -3.8658 -3.1378 45 1 9.8355 0.2889 -0.0172 46 1 8.9617 -1.1238 0.6537 47 1 4.3919 -1.4097 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146966352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:51 Heat of formation + Delta-G solvation = 41.029137 kcal Electronic energy + Delta-G solvation = -29676.781769 eV Core-core repulsion = 25476.173803 eV Total energy + Delta-G solvation = -4200.607967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.49412 -41.77809 -40.20111 -39.24707 -37.54030 -35.84583 -34.44084 -33.29018 -32.57822 -31.48016 -30.37979 -28.87360 -28.07149 -27.02014 -26.62319 -25.39717 -23.21175 -22.53264 -22.02276 -20.98198 -20.56526 -19.91637 -19.56195 -18.46232 -17.71291 -17.35712 -16.96529 -16.80357 -16.52745 -16.37234 -16.22757 -16.07780 -15.75746 -15.47104 -15.36173 -14.77998 -14.70722 -14.34138 -14.14027 -13.96753 -13.63325 -13.56360 -13.48599 -13.46205 -13.25482 -12.93607 -12.91143 -12.51269 -12.37535 -12.30678 -12.19249 -12.10734 -12.02596 -11.87456 -11.45016 -11.23807 -10.89558 -10.63121 -10.24805 -9.96476 -9.93701 -9.53407 -9.27602 -8.43547 -5.91393 0.49520 1.10302 1.38082 1.40265 1.43159 1.56965 1.90123 2.11461 2.30953 2.41077 2.84022 3.23768 3.24979 3.34663 3.47875 3.64754 3.76752 3.80762 3.91001 4.02229 4.11847 4.29020 4.37421 4.39779 4.42122 4.48532 4.51342 4.56457 4.59966 4.62647 4.66577 4.69235 4.72007 4.78671 4.89444 4.94961 5.01215 5.01561 5.20766 5.26990 5.37895 5.44428 5.84348 5.90932 5.98682 6.15057 6.47370 6.65387 6.72791 7.17615 7.17871 7.62071 8.18518 8.74151 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.001816 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.362401 B =15415.896338 C =16175.881622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.361 5.361 3 C 0.134 3.866 4 C -0.315 4.315 5 C 0.621 3.379 6 O -0.596 6.596 7 N -0.643 5.643 8 C 0.122 3.878 9 C -0.090 4.090 10 C 0.115 3.885 11 C -0.087 4.087 12 C 0.039 3.961 13 N -0.505 5.505 14 C 0.047 3.953 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.577 5.577 18 C -0.330 4.330 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.052 3.948 27 C 0.080 3.920 28 N -0.327 5.327 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.211 0.789 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.396 0.604 44 H 0.276 0.724 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.706 11.184 11.709 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.139 5.139 3 C -0.020 4.020 4 C -0.330 4.330 5 C 0.414 3.586 6 O -0.479 6.479 7 N -0.376 5.376 8 C 0.000 4.000 9 C -0.091 4.091 10 C -0.007 4.007 11 C -0.125 4.125 12 C -0.089 4.089 13 N -0.229 5.229 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.502 6.502 17 N -0.215 5.215 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.076 4.076 27 C -0.107 4.107 28 N -0.148 5.148 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.228 0.772 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -25.588 10.024 11.222 29.685 hybrid contribution 1.897 0.924 -0.657 2.210 sum -23.691 10.948 10.565 28.156 Atomic orbital electron populations 1.22419 0.70825 1.06745 1.05381 1.48825 1.08704 1.03082 1.53260 1.23337 0.89653 0.94788 0.94206 1.20204 0.93351 0.93789 1.25682 1.16914 0.81231 0.85842 0.74606 1.90735 1.86653 1.15728 1.54747 1.49398 1.04401 1.11196 1.72639 1.23033 0.78381 0.96762 1.01871 1.21927 0.95185 0.96538 0.95459 1.23341 0.90762 0.84351 1.02267 1.21889 0.96374 1.00889 0.93350 1.23104 0.96357 0.94723 0.94696 1.65139 1.12300 1.42487 1.02987 1.21927 0.90069 0.98159 0.98262 1.20848 0.82287 0.85748 0.88175 1.90483 1.50073 1.59930 1.49708 1.41941 1.07342 1.42481 1.29730 1.19669 0.93434 1.23418 1.09408 0.90473 1.25987 0.94910 0.99706 1.00701 1.69670 1.02088 1.45467 1.38997 0.84904 0.78034 0.77881 0.77724 1.19927 1.19742 1.19648 1.22981 0.94250 0.96142 0.94221 1.24608 0.95727 0.94043 0.96313 1.77179 1.02504 1.09214 1.25860 0.88894 0.88341 0.86062 0.77246 0.90800 0.87103 0.86427 0.89515 0.91092 0.90428 0.92380 0.94217 0.91216 0.86747 0.77036 0.91413 0.91291 0.87399 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.44 127.77 1.46 1.88 16 2 N -0.36 -5.40 3.98 -367.78 -1.46 -6.86 16 3 C 0.13 2.16 11.30 84.28 0.95 3.11 16 4 C -0.32 -6.55 6.13 -20.15 -0.12 -6.67 16 5 C 0.62 15.22 8.06 86.67 0.70 15.92 16 6 O -0.60 -18.57 17.67 -4.04 -0.07 -18.65 16 7 N -0.64 -12.65 3.68 -861.43 -3.17 -15.83 16 8 C 0.12 2.01 7.92 83.53 0.66 2.68 16 9 C -0.09 -1.57 1.29 -52.49 -0.07 -1.64 16 10 C 0.11 1.74 6.35 83.57 0.53 2.27 16 11 C -0.09 -1.97 6.52 31.21 0.20 -1.77 16 12 C 0.04 1.18 5.83 86.54 0.50 1.68 16 13 N -0.50 -14.80 5.06 -886.61 -4.49 -19.28 16 14 C 0.05 1.54 5.30 85.56 0.45 1.99 16 15 C 0.44 20.62 7.59 87.66 0.66 21.29 16 16 O -0.62 -33.68 14.43 -3.05 -0.04 -33.73 16 17 N -0.58 -29.28 5.29 -306.97 -1.62 -30.91 16 18 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 22 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 C 0.05 0.95 5.95 86.01 0.51 1.47 16 27 C 0.08 1.54 11.14 85.65 0.95 2.50 16 28 N -0.33 -6.70 12.50 -56.28 -0.70 -7.40 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.07 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.23 7.99 -2.39 -0.02 1.21 16 36 H 0.09 1.32 5.99 -2.39 -0.01 1.31 16 37 H 0.07 1.69 7.84 -2.39 -0.02 1.67 16 38 H 0.08 1.65 7.83 -2.39 -0.02 1.63 16 39 H 0.06 2.23 6.93 -2.38 -0.02 2.21 16 40 H 0.04 1.16 7.81 -2.39 -0.02 1.14 16 41 H 0.07 2.01 7.88 -2.39 -0.02 1.99 16 42 H 0.11 3.17 8.13 -2.38 -0.02 3.15 16 43 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.07 1.08 7.98 -2.39 -0.02 1.06 16 46 H 0.11 1.59 7.87 -2.39 -0.02 1.57 16 47 H 0.20 3.11 5.21 -2.91 -0.02 3.09 16 Total: -1.00 -80.96 389.89 -0.29 -81.25 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.28 Total: 28.94 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 8.69 Total: 26.59 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -11.17 Total: -129.49 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.12 Total: -52.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.96 -0.29 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146966352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.283 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds