Wall clock time and date at job start Wed Apr 1 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28433 * 125.19187 * 2 1 4 4 C 1.30865 * 110.92633 * 180.02562 * 3 2 1 5 5 C 1.39669 * 107.86280 * 0.02562 * 4 3 2 6 6 C 1.36597 * 125.18476 * 180.02562 * 2 1 3 7 7 C 1.47161 * 126.88777 * 359.97438 * 6 2 1 8 8 O 1.21629 * 120.00057 * 5.47165 * 7 6 2 9 9 N 1.34781 * 119.99951 * 185.46602 * 7 6 2 10 10 C 1.47286 * 135.91683 * 4.97784 * 9 7 6 11 11 C 1.52553 * 87.56813 * 153.98484 * 10 9 7 12 12 C 1.47302 * 135.91439 * 185.34511 * 9 7 6 13 13 C 1.53133 * 116.55361 * 268.66766 * 11 10 9 14 14 C 1.54688 * 104.56492 * 228.34312 * 13 11 10 15 15 N 1.48666 * 104.65852 * 23.68468 * 14 13 11 16 16 C 1.46898 * 110.99842 * 201.53295 * 15 14 13 17 17 C 1.50702 * 109.47152 * 290.12627 * 16 15 14 18 18 O 1.21288 * 120.00024 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99790 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99788 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00033 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48513 * 109.46838 * 60.00019 * 24 22 20 26 26 H 1.48497 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47106 * 300.00161 * 24 22 20 28 28 C 1.48844 * 104.43511 * 321.21610 * 15 14 13 29 29 H 1.09006 * 109.46831 * 85.26834 * 1 2 3 30 30 H 1.08991 * 109.46998 * 205.26951 * 1 2 3 31 31 H 1.09003 * 109.46764 * 325.27308 * 1 2 3 32 32 H 1.08008 * 126.06813 * 179.97438 * 4 3 2 33 33 H 1.08004 * 127.32126 * 179.97438 * 5 4 3 34 34 H 1.09004 * 113.51728 * 268.63306 * 10 9 7 35 35 H 1.09000 * 113.52303 * 39.23967 * 10 9 7 36 36 H 1.09004 * 113.51444 * 320.76294 * 12 9 7 37 37 H 1.08991 * 113.51711 * 91.29833 * 12 9 7 38 38 H 1.08997 * 110.42244 * 347.11377 * 13 11 10 39 39 H 1.09002 * 110.41558 * 109.56996 * 13 11 10 40 40 H 1.08992 * 110.40065 * 142.48452 * 14 13 11 41 41 H 1.08999 * 110.39859 * 264.77567 * 14 13 11 42 42 H 1.09007 * 109.47254 * 50.12674 * 16 15 14 43 43 H 1.09001 * 109.46852 * 170.12840 * 16 15 14 44 44 H 0.96999 * 120.00066 * 0.02562 * 19 17 16 45 45 H 0.96999 * 119.99950 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.47056 * 279.66582 * 28 15 14 47 47 H 1.09008 * 110.46966 * 157.06438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4736 0.7271 -0.0005 5 6 3.5612 -0.6668 -0.0015 6 6 2.2522 -1.1164 -0.0005 7 6 1.7992 -2.5166 -0.0006 8 8 0.6143 -2.7724 -0.1007 9 7 2.6973 -3.5154 0.1101 10 6 4.1498 -3.6122 0.3339 11 6 3.9002 -4.9936 0.9310 12 6 2.6558 -4.9868 0.0535 13 6 3.6659 -5.0537 2.4431 14 6 4.5994 -6.1840 2.9368 15 7 5.6644 -6.2708 1.9031 16 6 6.3241 -7.5829 1.9359 17 6 7.1482 -7.6996 3.1923 18 8 7.1821 -6.7804 3.9828 19 7 7.8474 -8.8254 3.4374 20 6 8.5967 -8.9317 4.5806 21 1 8.6262 -8.1136 5.2849 22 6 9.3180 -10.0922 4.8331 23 7 9.2816 -11.0880 3.9763 24 14 10.3394 -10.2369 6.3903 25 1 9.4562 -10.0982 7.5762 26 1 11.0068 -11.5630 6.4232 27 1 11.3665 -9.1646 6.4100 28 6 4.9483 -6.0659 0.6145 29 1 -0.3633 0.0848 -1.0242 30 1 -0.3633 -0.9293 0.4387 31 1 -0.3633 0.8447 0.5855 32 1 4.3050 1.4166 -0.0011 33 1 4.4595 -1.2665 -0.0026 34 1 4.7314 -3.6354 -0.5877 35 1 4.5282 -2.8872 1.0545 36 1 1.7791 -5.4161 0.5385 37 1 2.8245 -5.3885 -0.9456 38 1 3.9377 -4.1060 2.9080 39 1 2.6257 -5.2988 2.6573 40 1 5.0293 -5.9263 3.9046 41 1 4.0540 -7.1255 3.0029 42 1 5.5696 -8.3695 1.9220 43 1 6.9722 -7.6856 1.0655 44 1 7.8205 -9.5604 2.8050 45 1 9.7854 -11.8979 4.1523 46 1 4.4647 -6.9894 0.2960 47 1 5.6371 -5.7111 -0.1522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147117511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:11 Heat of formation + Delta-G solvation = 71.386996 kcal Electronic energy + Delta-G solvation = -29941.448907 eV Core-core repulsion = 25742.157356 eV Total energy + Delta-G solvation = -4199.291551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.83659 -41.22247 -38.95021 -38.14247 -36.49570 -33.90938 -33.67148 -32.10491 -31.32825 -30.89362 -29.42768 -27.62435 -27.28089 -26.56293 -25.48745 -24.05418 -22.83162 -21.71864 -21.34639 -19.85866 -19.40203 -18.80776 -17.86452 -17.73433 -16.87779 -16.66919 -16.20550 -15.79623 -15.78710 -15.25967 -15.14703 -14.55919 -14.45724 -14.24274 -14.11648 -13.91160 -13.79006 -13.70503 -13.19595 -13.13335 -13.06946 -12.66366 -12.44409 -12.23458 -11.95062 -11.62460 -11.50597 -11.37190 -11.21017 -11.13103 -11.11268 -10.83860 -10.50088 -10.44352 -10.29945 -10.21867 -9.58594 -9.49057 -9.35737 -9.06206 -8.53785 -8.05925 -7.95663 -6.42368 -3.83147 0.92038 1.91930 2.29727 2.59160 2.86423 3.19445 3.25313 3.29480 3.72004 3.89821 3.93586 4.09255 4.22141 4.24947 4.34047 4.65296 4.74675 4.77015 4.81452 4.93243 4.99010 5.06669 5.15374 5.16233 5.20938 5.23554 5.26507 5.32447 5.36486 5.43646 5.48221 5.57729 5.61103 5.74362 5.78326 5.83207 5.91089 6.11356 6.15292 6.25540 6.36387 6.40729 7.04307 7.15010 7.25103 7.54347 7.60916 7.77502 8.05255 8.61091 9.17539 9.53787 10.05659 10.75310 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.001829 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.706587 B =15301.868880 C =15789.760873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.259 5.259 3 N -0.279 5.279 4 C -0.003 4.003 5 C -0.186 4.186 6 C -0.035 4.035 7 C 0.621 3.379 8 O -0.545 6.545 9 N -0.631 5.631 10 C 0.112 3.888 11 C -0.096 4.096 12 C 0.122 3.878 13 C -0.096 4.096 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.047 3.953 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.052 0.948 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.265 15.238 -12.112 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.047 5.047 3 N -0.111 5.111 4 C -0.179 4.179 5 C -0.215 4.215 6 C -0.164 4.164 7 C 0.410 3.590 8 O -0.424 6.424 9 N -0.365 5.365 10 C -0.010 4.010 11 C -0.098 4.098 12 C 0.000 4.000 13 C -0.134 4.134 14 C -0.090 4.090 15 N -0.206 5.206 16 C -0.097 4.097 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.082 4.082 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.205 0.795 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.410 17.011 -11.545 25.693 hybrid contribution 0.563 -1.924 0.066 2.005 sum -14.847 15.087 -11.479 24.080 Atomic orbital electron populations 1.22375 0.72504 1.06114 1.04649 1.45629 1.07917 1.01653 1.49480 1.73224 1.04503 1.13557 1.19866 1.23629 0.93448 0.95070 1.05725 1.22474 0.95816 0.95624 1.07554 1.21268 0.91602 0.89278 1.14220 1.16289 0.84333 0.82121 0.76240 1.90781 1.15684 1.84133 1.51766 1.49253 1.09709 1.06875 1.70665 1.23292 0.80687 0.96447 1.00590 1.22116 0.95373 0.95605 0.96662 1.23020 0.98235 0.78662 1.00108 1.22007 0.99518 1.00358 0.91496 1.23244 0.91017 0.96552 0.98151 1.65213 1.24568 1.29261 1.01599 1.22067 0.98266 0.90045 0.99370 1.19685 0.84789 0.84254 0.88300 1.90505 1.67215 1.39287 1.49154 1.41854 1.41949 1.14736 1.21645 1.19639 1.22748 1.01774 0.98655 0.87984 1.25255 0.98314 0.95225 0.99164 1.69603 1.42648 1.05879 1.36252 0.85924 0.79713 0.77300 0.81316 1.19952 1.21011 1.19886 1.22885 0.94503 0.96645 0.94156 0.89734 0.87036 0.88910 0.79470 0.81886 0.88724 0.89121 0.89798 0.89015 0.90409 0.91053 0.88064 0.94239 0.93182 0.89201 0.77523 0.91847 0.93006 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.91 59.85 0.65 1.32 16 2 N -0.26 -2.81 3.75 -63.88 -0.24 -3.05 16 3 N -0.28 -3.08 11.90 30.59 0.36 -2.72 16 4 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 5 C -0.19 -1.72 10.06 -38.98 -0.39 -2.11 16 6 C -0.04 -0.39 6.95 -82.06 -0.57 -0.96 16 7 C 0.62 7.31 8.04 -12.64 -0.10 7.21 16 8 O -0.55 -7.64 15.44 5.25 0.08 -7.56 16 9 N -0.63 -6.12 3.68 -186.55 -0.69 -6.80 16 10 C 0.11 0.89 6.00 -7.64 -0.05 0.84 16 11 C -0.10 -0.87 1.29 -154.92 -0.20 -1.07 16 12 C 0.12 1.02 7.92 -7.77 -0.06 0.96 16 13 C -0.10 -1.05 6.53 -25.77 -0.17 -1.22 16 14 C 0.04 0.55 5.82 -1.96 -0.01 0.53 16 15 N -0.48 -7.11 5.06 -231.59 -1.17 -8.28 16 16 C 0.03 0.56 5.30 -4.98 -0.03 0.54 16 17 C 0.44 10.05 7.59 -10.99 -0.08 9.96 16 18 O -0.58 -15.01 14.43 5.55 0.08 -14.93 16 19 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.05 0.47 5.95 -2.62 -0.02 0.46 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.97 6.17 -51.93 -0.32 0.65 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.16 1.16 5.79 -52.48 -0.30 0.85 16 34 H 0.09 0.58 7.99 -51.93 -0.41 0.16 16 35 H 0.09 0.72 6.79 -51.93 -0.35 0.37 16 36 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 39 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 40 H 0.10 1.79 6.93 -51.93 -0.36 1.43 16 41 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 42 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 43 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 44 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.05 0.47 7.98 -51.93 -0.41 0.06 16 47 H 0.09 0.77 7.86 -51.92 -0.41 0.36 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -34.20 385.82 -8.15 -42.35 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.56 Total: 8.38 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -1.47 Total: 8.41 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -1.07 Total: -58.20 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.16 Total: -22.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.20 -8.15 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.741 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds