Wall clock time and date at job start Wed Apr 1 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28433 * 125.19187 * 2 1 4 4 C 1.30865 * 110.92633 * 180.02562 * 3 2 1 5 5 C 1.39669 * 107.86280 * 0.02562 * 4 3 2 6 6 C 1.36597 * 125.18476 * 180.02562 * 2 1 3 7 7 C 1.47161 * 126.88777 * 359.97438 * 6 2 1 8 8 O 1.21629 * 120.00057 * 5.47165 * 7 6 2 9 9 N 1.34781 * 119.99951 * 185.46602 * 7 6 2 10 10 C 1.47286 * 135.91683 * 4.97784 * 9 7 6 11 11 C 1.52553 * 87.56813 * 153.98484 * 10 9 7 12 12 C 1.47302 * 135.91439 * 185.34511 * 9 7 6 13 13 C 1.53133 * 116.55361 * 268.66766 * 11 10 9 14 14 C 1.54688 * 104.56492 * 228.34312 * 13 11 10 15 15 N 1.48666 * 104.65852 * 23.68468 * 14 13 11 16 16 C 1.46898 * 110.99842 * 201.53295 * 15 14 13 17 17 C 1.50702 * 109.47152 * 290.12627 * 16 15 14 18 18 O 1.21288 * 120.00024 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99790 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99788 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00033 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48513 * 109.46838 * 60.00019 * 24 22 20 26 26 H 1.48497 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47106 * 300.00161 * 24 22 20 28 28 C 1.48844 * 104.43511 * 321.21610 * 15 14 13 29 29 H 1.09006 * 109.46831 * 85.26834 * 1 2 3 30 30 H 1.08991 * 109.46998 * 205.26951 * 1 2 3 31 31 H 1.09003 * 109.46764 * 325.27308 * 1 2 3 32 32 H 1.08008 * 126.06813 * 179.97438 * 4 3 2 33 33 H 1.08004 * 127.32126 * 179.97438 * 5 4 3 34 34 H 1.09004 * 113.51728 * 268.63306 * 10 9 7 35 35 H 1.09000 * 113.52303 * 39.23967 * 10 9 7 36 36 H 1.09004 * 113.51444 * 320.76294 * 12 9 7 37 37 H 1.08991 * 113.51711 * 91.29833 * 12 9 7 38 38 H 1.08997 * 110.42244 * 347.11377 * 13 11 10 39 39 H 1.09002 * 110.41558 * 109.56996 * 13 11 10 40 40 H 1.08992 * 110.40065 * 142.48452 * 14 13 11 41 41 H 1.08999 * 110.39859 * 264.77567 * 14 13 11 42 42 H 1.09007 * 109.47254 * 50.12674 * 16 15 14 43 43 H 1.09001 * 109.46852 * 170.12840 * 16 15 14 44 44 H 0.96999 * 120.00066 * 0.02562 * 19 17 16 45 45 H 0.96999 * 119.99950 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.47056 * 279.66582 * 28 15 14 47 47 H 1.09008 * 110.46966 * 157.06438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4736 0.7271 -0.0005 5 6 3.5612 -0.6668 -0.0015 6 6 2.2522 -1.1164 -0.0005 7 6 1.7992 -2.5166 -0.0006 8 8 0.6143 -2.7724 -0.1007 9 7 2.6973 -3.5154 0.1101 10 6 4.1498 -3.6122 0.3339 11 6 3.9002 -4.9936 0.9310 12 6 2.6558 -4.9868 0.0535 13 6 3.6659 -5.0537 2.4431 14 6 4.5994 -6.1840 2.9368 15 7 5.6644 -6.2708 1.9031 16 6 6.3241 -7.5829 1.9359 17 6 7.1482 -7.6996 3.1923 18 8 7.1821 -6.7804 3.9828 19 7 7.8474 -8.8254 3.4374 20 6 8.5967 -8.9317 4.5806 21 1 8.6262 -8.1136 5.2849 22 6 9.3180 -10.0922 4.8331 23 7 9.2816 -11.0880 3.9763 24 14 10.3394 -10.2369 6.3903 25 1 9.4562 -10.0982 7.5762 26 1 11.0068 -11.5630 6.4232 27 1 11.3665 -9.1646 6.4100 28 6 4.9483 -6.0659 0.6145 29 1 -0.3633 0.0848 -1.0242 30 1 -0.3633 -0.9293 0.4387 31 1 -0.3633 0.8447 0.5855 32 1 4.3050 1.4166 -0.0011 33 1 4.4595 -1.2665 -0.0026 34 1 4.7314 -3.6354 -0.5877 35 1 4.5282 -2.8872 1.0545 36 1 1.7791 -5.4161 0.5385 37 1 2.8245 -5.3885 -0.9456 38 1 3.9377 -4.1060 2.9080 39 1 2.6257 -5.2988 2.6573 40 1 5.0293 -5.9263 3.9046 41 1 4.0540 -7.1255 3.0029 42 1 5.5696 -8.3695 1.9220 43 1 6.9722 -7.6856 1.0655 44 1 7.8205 -9.5604 2.8050 45 1 9.7854 -11.8979 4.1523 46 1 4.4647 -6.9894 0.2960 47 1 5.6371 -5.7111 -0.1522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147117511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:09 Heat of formation + Delta-G solvation = 45.312396 kcal Electronic energy + Delta-G solvation = -29942.579587 eV Core-core repulsion = 25742.157356 eV Total energy + Delta-G solvation = -4200.422230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.55742 -42.01094 -40.25494 -39.43782 -37.63784 -35.84696 -34.36682 -33.31456 -32.92613 -31.92653 -30.30514 -28.74461 -28.05642 -27.21144 -26.84824 -25.51478 -23.60336 -22.61382 -22.31129 -20.98441 -20.59101 -19.93724 -19.60489 -18.49458 -17.72795 -17.67164 -17.39984 -16.87244 -16.52283 -16.43037 -16.30434 -16.13247 -15.77829 -15.50546 -15.13538 -14.83634 -14.72168 -14.61160 -14.33074 -14.20488 -13.76600 -13.63323 -13.49448 -13.34414 -13.28807 -12.92257 -12.90634 -12.54160 -12.40058 -12.28263 -12.21440 -12.10785 -11.95745 -11.88866 -11.43671 -11.28260 -11.13583 -10.36926 -10.24694 -10.05523 -9.96353 -9.78738 -9.28127 -8.43069 -5.91015 0.15167 1.22476 1.41600 1.43350 1.53777 1.59522 1.90385 2.07253 2.11905 2.31195 2.82171 3.14561 3.24181 3.25626 3.44408 3.57882 3.64619 3.77915 3.95733 4.08037 4.25108 4.27317 4.32701 4.35249 4.40014 4.47894 4.51734 4.55540 4.60052 4.60355 4.64551 4.67952 4.75060 4.77664 4.86374 4.88319 4.95298 4.99922 5.18823 5.25064 5.44212 5.50026 5.67783 5.90279 5.98190 6.14736 6.48509 6.65599 6.82245 7.03049 7.17673 7.62364 8.18752 8.74065 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.001829 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.706587 B =15301.868880 C =15789.760873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.270 5.270 3 N -0.301 5.301 4 C -0.007 4.007 5 C -0.180 4.180 6 C -0.057 4.057 7 C 0.616 3.384 8 O -0.578 6.578 9 N -0.631 5.631 10 C 0.114 3.886 11 C -0.090 4.090 12 C 0.125 3.875 13 C -0.088 4.088 14 C 0.039 3.961 15 N -0.505 5.505 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.052 3.948 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.217 0.783 33 H 0.185 0.815 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.070 0.930 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 15.328 -13.831 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.058 5.058 3 N -0.134 5.134 4 C -0.182 4.182 5 C -0.208 4.208 6 C -0.185 4.185 7 C 0.406 3.594 8 O -0.459 6.459 9 N -0.364 5.364 10 C -0.007 4.007 11 C -0.091 4.091 12 C 0.003 3.997 13 C -0.126 4.126 14 C -0.089 4.089 15 N -0.229 5.229 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.076 4.076 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.233 0.767 33 H 0.202 0.798 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.133 0.867 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.977 17.085 -13.288 26.321 hybrid contribution 0.423 -1.909 0.613 2.049 sum -14.554 15.176 -12.675 24.552 Atomic orbital electron populations 1.22471 0.71681 1.06206 1.05490 1.45875 1.08656 1.01610 1.49690 1.73206 1.05440 1.14043 1.20685 1.24204 0.93615 0.95732 1.04625 1.22783 0.95827 0.95874 1.06349 1.21441 0.92521 0.89171 1.15399 1.16438 0.84168 0.82723 0.76108 1.90757 1.16974 1.84639 1.53548 1.49306 1.10338 1.07171 1.69608 1.23481 0.79931 0.95449 1.01843 1.21941 0.95773 0.96309 0.95091 1.23153 0.97418 0.77909 1.01213 1.21891 0.98910 0.98599 0.93176 1.23095 0.91409 0.97764 0.96642 1.65142 1.25652 1.28146 1.03937 1.21928 0.98308 0.91833 0.96334 1.20857 0.83848 0.82764 0.89661 1.90484 1.68209 1.40448 1.51084 1.41936 1.42556 1.15693 1.21281 1.19589 1.24742 1.01849 0.99829 0.90448 1.25989 0.98850 0.94562 1.01929 1.69662 1.43015 1.06125 1.37379 0.85031 0.78149 0.77686 0.77729 1.19892 1.19606 1.19753 1.22988 0.94783 0.97727 0.92077 0.88794 0.88124 0.87319 0.76655 0.79789 0.85738 0.89130 0.90378 0.86336 0.91141 0.90409 0.92440 0.94213 0.91215 0.86670 0.77030 0.91412 0.91183 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.91 127.77 1.39 2.68 16 2 N -0.27 -5.71 3.75 -356.00 -1.33 -7.05 16 3 N -0.30 -6.35 11.90 -57.14 -0.68 -7.03 16 4 C -0.01 -0.11 12.03 85.18 1.02 0.91 16 5 C -0.18 -2.97 10.06 22.66 0.23 -2.74 16 6 C -0.06 -1.21 6.95 40.79 0.28 -0.92 16 7 C 0.62 13.92 8.04 86.59 0.70 14.61 16 8 O -0.58 -16.14 15.44 -4.12 -0.06 -16.20 16 9 N -0.63 -10.82 3.68 -862.35 -3.17 -13.99 16 10 C 0.11 1.44 6.00 83.62 0.50 1.94 16 11 C -0.09 -1.36 1.29 -52.44 -0.07 -1.43 16 12 C 0.12 1.71 7.92 83.52 0.66 2.37 16 13 C -0.09 -1.84 6.53 31.21 0.20 -1.63 16 14 C 0.04 1.11 5.82 86.54 0.50 1.62 16 15 N -0.50 -13.98 5.06 -886.62 -4.49 -18.47 16 16 C 0.05 1.48 5.30 85.56 0.45 1.93 16 17 C 0.44 20.13 7.59 87.66 0.66 20.79 16 18 O -0.62 -33.04 14.43 -3.05 -0.04 -33.09 16 19 N -0.58 -28.78 5.29 -306.99 -1.62 -30.40 16 20 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 23 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 24 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 C 0.05 0.85 5.95 86.01 0.51 1.36 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.10 1.82 6.17 -2.39 -0.01 1.81 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.22 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.18 2.05 5.79 -2.91 -0.02 2.04 16 34 H 0.12 0.91 7.99 -2.38 -0.02 0.90 16 35 H 0.09 1.19 6.79 -2.39 -0.02 1.18 16 36 H 0.08 1.20 7.93 -2.38 -0.02 1.19 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.57 7.86 -2.39 -0.02 1.55 16 39 H 0.08 1.52 7.83 -2.39 -0.02 1.50 16 40 H 0.06 2.14 6.93 -2.39 -0.02 2.12 16 41 H 0.04 1.11 7.82 -2.39 -0.02 1.09 16 42 H 0.07 1.92 7.88 -2.38 -0.02 1.90 16 43 H 0.12 3.03 8.13 -2.39 -0.02 3.01 16 44 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 45 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 46 H 0.07 0.95 7.98 -2.39 -0.02 0.93 16 47 H 0.11 1.37 7.86 -2.38 -0.02 1.35 16 Total: -1.00 -76.69 385.82 -0.47 -77.16 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.28 Total: 29.61 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 8.34 Total: 23.59 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -11.01 Total: -125.63 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.11 Total: -49.29 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -76.69 -0.47 -77.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.471 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds