Wall clock time and date at job start Wed Apr 1 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35849 * 126.13951 * 2 1 4 4 N 1.30164 * 109.00479 * 179.74017 * 3 2 1 5 5 C 1.35756 * 108.87063 * 0.38608 * 4 3 2 6 6 C 1.47322 * 126.24014 * 179.88001 * 5 4 3 7 7 O 1.21627 * 120.00445 * 179.68822 * 6 5 4 8 8 N 1.34772 * 119.99895 * 359.69147 * 6 5 4 9 9 C 1.47857 * 134.36435 * 180.02562 * 8 6 5 10 10 C 1.52558 * 85.65964 * 156.35425 * 9 8 6 11 11 C 1.47859 * 134.36320 * 359.96532 * 8 6 5 12 12 C 1.53289 * 116.29733 * 141.22577 * 10 9 8 13 13 C 1.54304 * 104.73848 * 108.75734 * 12 10 9 14 14 N 1.48011 * 107.04903 * 357.92290 * 13 12 10 15 15 C 1.46903 * 110.99932 * 145.62268 * 14 13 12 16 16 C 1.50703 * 109.46925 * 183.37303 * 15 14 13 17 17 O 1.21293 * 120.00003 * 353.87383 * 16 15 14 18 18 N 1.34767 * 119.99799 * 173.87616 * 16 15 14 19 19 C 1.37098 * 120.00203 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99675 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00415 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99637 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47113 * 90.00129 * 23 21 19 25 25 H 1.48505 * 109.46914 * 209.99688 * 23 21 19 26 26 H 1.48501 * 109.47367 * 329.99697 * 23 21 19 27 27 C 1.48787 * 106.05050 * 24.96114 * 14 13 12 28 28 C 1.35378 * 126.13557 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46615 * 270.02116 * 1 2 3 30 30 H 1.08995 * 109.46723 * 30.02379 * 1 2 3 31 31 H 1.09001 * 109.47095 * 150.02144 * 1 2 3 32 32 H 1.07998 * 125.49249 * 359.97438 * 3 2 1 33 33 H 1.08997 * 113.84080 * 42.16855 * 9 8 6 34 34 H 1.09002 * 113.95569 * 270.55016 * 9 8 6 35 35 H 1.09002 * 113.83985 * 89.46066 * 11 8 6 36 36 H 1.08999 * 113.84390 * 317.83385 * 11 8 6 37 37 H 1.09002 * 110.37752 * 349.94580 * 12 10 9 38 38 H 1.09000 * 110.38091 * 227.57583 * 12 10 9 39 39 H 1.09001 * 109.91059 * 117.26791 * 13 12 10 40 40 H 1.08999 * 109.91964 * 238.36995 * 13 12 10 41 41 H 1.08993 * 109.46656 * 303.36930 * 15 14 13 42 42 H 1.08997 * 109.47038 * 63.37157 * 15 14 13 43 43 H 0.97006 * 120.00430 * 359.97438 * 18 16 15 44 44 H 0.96995 * 119.99485 * 180.02562 * 22 21 19 45 45 H 1.09006 * 110.68816 * 80.72689 * 27 14 13 46 46 H 1.08995 * 110.69226 * 203.74937 * 27 14 13 47 47 H 1.08006 * 126.56134 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0971 0.0000 4 7 3.5100 0.7136 0.0056 5 6 3.5512 -0.6433 0.0007 6 6 4.7653 -1.4778 0.0019 7 8 4.6699 -2.6903 0.0028 8 7 5.9817 -0.8977 0.0021 9 6 7.3699 -1.4067 0.0027 10 6 7.7415 -0.0589 -0.6077 11 6 6.4598 0.5015 0.0007 12 6 9.0540 0.5674 -0.1233 13 6 10.0152 0.4424 -1.3239 14 7 9.2807 -0.2660 -2.3959 15 6 9.6751 0.2305 -3.7211 16 6 8.8492 -0.4534 -4.7800 17 8 8.0940 -1.3519 -4.4738 18 7 8.9498 -0.0669 -6.0671 19 6 8.1989 -0.6894 -7.0305 20 1 7.5270 -1.4899 -6.7580 21 6 8.3022 -0.2904 -8.3576 22 7 9.1193 0.6840 -8.6890 23 14 7.2795 -1.1392 -9.6702 24 1 5.9808 -0.4344 -9.8186 25 1 8.0097 -1.1088 -10.9630 26 1 7.0351 -2.5490 -9.2727 27 6 7.8366 -0.0149 -2.1404 28 6 2.2633 -1.0933 0.0005 29 1 -0.3632 0.0004 1.0276 30 1 -0.3632 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9259 2.1221 -0.0004 33 1 7.5294 -2.2524 -0.6662 34 1 7.7818 -1.5677 0.9990 35 1 6.5926 0.9227 0.9972 36 1 5.9036 1.1565 -0.6698 37 1 9.4434 0.0176 0.7336 38 1 8.9022 1.6156 0.1341 39 1 10.3099 1.4338 -1.6682 40 1 10.8980 -0.1279 -1.0350 41 1 9.5094 1.3067 -3.7699 42 1 10.7306 0.0174 -3.8895 43 1 9.5535 0.6519 -6.3119 44 1 9.1911 0.9626 -9.6153 45 1 7.5437 0.9654 -2.5165 46 1 7.2244 -0.7969 -2.5895 47 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147329033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:19 Heat of formation + Delta-G solvation = 49.572791 kcal Electronic energy + Delta-G solvation = -30423.367148 eV Core-core repulsion = 26223.129662 eV Total energy + Delta-G solvation = -4200.237486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34612 -40.67714 -38.63438 -37.80451 -36.12609 -34.39284 -33.84522 -31.57901 -31.07344 -30.05186 -29.04850 -27.71426 -27.07220 -26.17700 -25.33567 -23.95849 -22.59423 -21.38229 -21.00001 -19.44830 -19.11174 -18.61366 -17.80397 -17.64259 -16.38338 -16.21633 -16.07772 -15.68927 -15.43117 -15.04894 -14.86652 -14.43467 -14.38597 -14.19586 -13.98102 -13.71600 -13.68264 -13.40858 -13.22508 -13.01295 -12.95925 -12.51696 -12.39506 -11.98712 -11.80008 -11.46220 -11.41656 -11.21509 -11.11877 -10.82243 -10.69616 -10.51617 -10.35012 -10.22536 -10.17051 -10.01533 -9.75138 -9.43324 -8.87505 -8.46240 -8.34231 -7.94906 -7.84948 -6.37188 -3.77405 1.47493 2.28865 2.33947 2.99341 3.20984 3.29198 3.36123 3.59998 3.96703 4.06502 4.17435 4.24817 4.26330 4.52947 4.54863 4.62704 4.65004 4.73519 4.90073 4.90144 5.13525 5.18987 5.22142 5.28890 5.32112 5.47813 5.64756 5.74505 5.77019 5.77732 5.80283 5.87892 5.91094 5.94542 5.97270 6.13918 6.16633 6.19485 6.29954 6.34688 6.69353 6.76647 7.25304 7.34943 7.57959 7.60100 7.84437 8.11748 8.35792 8.67388 9.23488 9.59883 10.12310 10.80808 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.002939 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.868750 B = 9526.009768 C =11734.433740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.181 3.819 4 N -0.458 5.458 5 C -0.052 4.052 6 C 0.623 3.377 7 O -0.548 6.548 8 N -0.627 5.627 9 C 0.130 3.870 10 C -0.104 4.104 11 C 0.132 3.868 12 C -0.113 4.113 13 C 0.034 3.966 14 N -0.494 5.494 15 C 0.038 3.962 16 C 0.443 3.557 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.069 3.931 28 C 0.030 3.970 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.211 0.789 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.043 0.957 46 H 0.108 0.892 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 6.175 20.901 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.145 5.145 3 C -0.102 4.102 4 N -0.177 5.177 5 C -0.181 4.181 6 C 0.413 3.587 7 O -0.426 6.426 8 N -0.361 5.361 9 C 0.009 3.991 10 C -0.105 4.105 11 C 0.009 3.991 12 C -0.152 4.152 13 C -0.094 4.094 14 N -0.218 5.218 15 C -0.094 4.094 16 C 0.228 3.772 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.058 4.058 28 C -0.108 4.108 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.227 0.773 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.126 0.874 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.991 4.857 20.903 24.111 hybrid contribution -1.043 0.687 -1.001 1.601 sum -12.034 5.544 19.902 23.910 Atomic orbital electron populations 1.22136 0.75866 1.05243 1.03902 1.45338 1.08211 1.06943 1.53975 1.25217 0.85273 0.93556 1.06162 1.70642 1.19228 1.10471 1.17367 1.20504 0.92912 0.90485 1.14220 1.16489 0.80679 0.85815 0.75747 1.90798 1.86148 1.13360 1.52286 1.49732 1.04390 1.09735 1.72219 1.23018 0.77960 0.97858 1.00302 1.22466 0.94401 0.96331 0.97337 1.22993 0.90832 0.84680 1.00563 1.22181 0.93985 1.00849 0.98179 1.22967 0.97546 0.97126 0.91787 1.64561 1.04034 1.52806 1.00430 1.22078 1.00596 0.97016 0.89696 1.19751 0.86934 0.87064 0.83459 1.90514 1.41664 1.32636 1.81098 1.41859 1.39217 1.33842 1.05320 1.19699 1.20013 1.16463 0.86398 0.87964 1.25242 0.97667 0.96813 0.98261 1.69615 1.37248 1.28298 1.19348 0.85876 0.79230 0.79768 0.79538 1.20500 1.20944 1.19387 1.22886 0.90386 1.01454 0.91089 1.22590 0.90205 0.93198 1.04846 0.90171 0.88998 0.89246 0.77284 0.88946 0.89913 0.89920 0.88998 0.90598 0.90843 0.93882 0.90364 0.93486 0.89145 0.77527 0.91954 0.93915 0.87356 0.79539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.15 59.85 0.67 0.90 16 2 N -0.46 -3.79 3.13 -125.78 -0.39 -4.19 16 3 C 0.18 1.65 12.55 -89.91 -1.13 0.52 16 4 N -0.46 -5.94 9.70 -11.03 -0.11 -6.05 16 5 C -0.05 -0.76 6.93 -83.09 -0.58 -1.33 16 6 C 0.62 10.70 8.04 -12.57 -0.10 10.60 16 7 O -0.55 -10.93 17.61 5.25 0.09 -10.83 16 8 N -0.63 -9.66 3.62 -187.00 -0.68 -10.33 16 9 C 0.13 1.85 8.09 -3.52 -0.03 1.82 16 10 C -0.10 -1.38 1.08 -154.71 -0.17 -1.54 16 11 C 0.13 1.66 7.18 -3.53 -0.03 1.64 16 12 C -0.11 -1.19 6.40 -25.90 -0.17 -1.36 16 13 C 0.03 0.43 6.73 -2.53 -0.02 0.41 16 14 N -0.49 -8.47 5.11 -232.23 -1.19 -9.66 16 15 C 0.04 0.70 5.30 -4.97 -0.03 0.67 16 16 C 0.44 10.75 7.41 -10.99 -0.08 10.67 16 17 O -0.58 -16.00 13.87 5.55 0.08 -15.92 16 18 N -0.57 -14.68 5.29 -10.96 -0.06 -14.73 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.07 1.20 4.90 -2.45 -0.01 1.19 16 28 C 0.03 0.34 11.26 -16.64 -0.19 0.16 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.21 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 34 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.24 7.49 -51.93 -0.39 0.85 16 37 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 38 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.79 7.99 -51.93 -0.41 0.38 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.04 0.74 7.99 -51.93 -0.42 0.33 16 46 H 0.11 2.37 6.41 -51.93 -0.33 2.04 16 47 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -37.69 392.45 -9.56 -47.25 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.83 Total: 10.06 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -2.09 Total: 16.23 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.70 Total: -69.24 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: 0.17 Total: -26.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.69 -9.56 -47.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147329033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.820 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds