Wall clock time and date at job start Wed Apr 1 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35849 * 126.13951 * 2 1 4 4 N 1.30164 * 109.00479 * 179.74017 * 3 2 1 5 5 C 1.35756 * 108.87063 * 0.38608 * 4 3 2 6 6 C 1.47322 * 126.24014 * 179.88001 * 5 4 3 7 7 O 1.21627 * 120.00445 * 179.68822 * 6 5 4 8 8 N 1.34772 * 119.99895 * 359.69147 * 6 5 4 9 9 C 1.47857 * 134.36435 * 180.02562 * 8 6 5 10 10 C 1.52558 * 85.65964 * 156.35425 * 9 8 6 11 11 C 1.47859 * 134.36320 * 359.96532 * 8 6 5 12 12 C 1.53289 * 116.29733 * 141.22577 * 10 9 8 13 13 C 1.54304 * 104.73848 * 108.75734 * 12 10 9 14 14 N 1.48011 * 107.04903 * 357.92290 * 13 12 10 15 15 C 1.46903 * 110.99932 * 145.62268 * 14 13 12 16 16 C 1.50703 * 109.46925 * 183.37303 * 15 14 13 17 17 O 1.21293 * 120.00003 * 353.87383 * 16 15 14 18 18 N 1.34767 * 119.99799 * 173.87616 * 16 15 14 19 19 C 1.37098 * 120.00203 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99675 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00415 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99637 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47113 * 90.00129 * 23 21 19 25 25 H 1.48505 * 109.46914 * 209.99688 * 23 21 19 26 26 H 1.48501 * 109.47367 * 329.99697 * 23 21 19 27 27 C 1.48787 * 106.05050 * 24.96114 * 14 13 12 28 28 C 1.35378 * 126.13557 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46615 * 270.02116 * 1 2 3 30 30 H 1.08995 * 109.46723 * 30.02379 * 1 2 3 31 31 H 1.09001 * 109.47095 * 150.02144 * 1 2 3 32 32 H 1.07998 * 125.49249 * 359.97438 * 3 2 1 33 33 H 1.08997 * 113.84080 * 42.16855 * 9 8 6 34 34 H 1.09002 * 113.95569 * 270.55016 * 9 8 6 35 35 H 1.09002 * 113.83985 * 89.46066 * 11 8 6 36 36 H 1.08999 * 113.84390 * 317.83385 * 11 8 6 37 37 H 1.09002 * 110.37752 * 349.94580 * 12 10 9 38 38 H 1.09000 * 110.38091 * 227.57583 * 12 10 9 39 39 H 1.09001 * 109.91059 * 117.26791 * 13 12 10 40 40 H 1.08999 * 109.91964 * 238.36995 * 13 12 10 41 41 H 1.08993 * 109.46656 * 303.36930 * 15 14 13 42 42 H 1.08997 * 109.47038 * 63.37157 * 15 14 13 43 43 H 0.97006 * 120.00430 * 359.97438 * 18 16 15 44 44 H 0.96995 * 119.99485 * 180.02562 * 22 21 19 45 45 H 1.09006 * 110.68816 * 80.72689 * 27 14 13 46 46 H 1.08995 * 110.69226 * 203.74937 * 27 14 13 47 47 H 1.08006 * 126.56134 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0971 0.0000 4 7 3.5100 0.7136 0.0056 5 6 3.5512 -0.6433 0.0007 6 6 4.7653 -1.4778 0.0019 7 8 4.6699 -2.6903 0.0028 8 7 5.9817 -0.8977 0.0021 9 6 7.3699 -1.4067 0.0027 10 6 7.7415 -0.0589 -0.6077 11 6 6.4598 0.5015 0.0007 12 6 9.0540 0.5674 -0.1233 13 6 10.0152 0.4424 -1.3239 14 7 9.2807 -0.2660 -2.3959 15 6 9.6751 0.2305 -3.7211 16 6 8.8492 -0.4534 -4.7800 17 8 8.0940 -1.3519 -4.4738 18 7 8.9498 -0.0669 -6.0671 19 6 8.1989 -0.6894 -7.0305 20 1 7.5270 -1.4899 -6.7580 21 6 8.3022 -0.2904 -8.3576 22 7 9.1193 0.6840 -8.6890 23 14 7.2795 -1.1392 -9.6702 24 1 5.9808 -0.4344 -9.8186 25 1 8.0097 -1.1088 -10.9630 26 1 7.0351 -2.5490 -9.2727 27 6 7.8366 -0.0149 -2.1404 28 6 2.2633 -1.0933 0.0005 29 1 -0.3632 0.0004 1.0276 30 1 -0.3632 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9259 2.1221 -0.0004 33 1 7.5294 -2.2524 -0.6662 34 1 7.7818 -1.5677 0.9990 35 1 6.5926 0.9227 0.9972 36 1 5.9036 1.1565 -0.6698 37 1 9.4434 0.0176 0.7336 38 1 8.9022 1.6156 0.1341 39 1 10.3099 1.4338 -1.6682 40 1 10.8980 -0.1279 -1.0350 41 1 9.5094 1.3067 -3.7699 42 1 10.7306 0.0174 -3.8895 43 1 9.5535 0.6519 -6.3119 44 1 9.1911 0.9626 -9.6153 45 1 7.5437 0.9654 -2.5165 46 1 7.2244 -0.7969 -2.5895 47 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147329033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:17 Heat of formation + Delta-G solvation = 20.849981 kcal Electronic energy + Delta-G solvation = -30424.612663 eV Core-core repulsion = 26223.129662 eV Total energy + Delta-G solvation = -4201.483000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.13949 -41.83647 -40.27666 -39.31656 -37.48958 -35.92901 -35.07139 -33.35561 -32.66664 -30.97137 -30.08355 -28.84001 -28.16408 -27.17866 -26.88038 -25.54063 -23.59045 -22.22334 -22.06670 -21.02367 -20.46892 -19.89480 -19.70274 -18.55208 -17.75313 -17.51328 -17.02467 -16.89860 -16.56687 -16.52731 -16.15167 -16.09857 -15.73967 -15.49572 -15.06613 -14.85171 -14.81963 -14.72227 -14.31246 -14.03086 -13.77006 -13.63006 -13.57210 -13.46460 -13.20504 -13.11420 -12.95326 -12.53117 -12.44484 -12.38248 -12.18773 -12.12540 -11.89027 -11.48442 -11.45294 -11.25934 -10.90311 -10.71934 -10.26726 -10.02231 -9.89838 -9.51665 -9.25482 -8.48775 -5.97162 0.52357 1.34671 1.38004 1.44379 1.51300 1.64555 1.99973 2.03894 2.26960 2.49074 2.82898 3.17788 3.21994 3.27634 3.50484 3.59308 3.75998 3.86805 3.96483 4.05231 4.12414 4.29011 4.34659 4.37704 4.42165 4.45354 4.48631 4.54720 4.62632 4.67348 4.71596 4.73656 4.82177 4.90193 4.93987 4.95986 5.05451 5.10599 5.27480 5.34987 5.39293 5.41003 5.86656 5.98136 6.12229 6.16355 6.59572 6.66231 6.75050 7.11628 7.15744 7.54619 8.12010 8.68907 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.002939 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.868750 B = 9526.009768 C =11734.433740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.454 5.454 3 C 0.194 3.806 4 N -0.491 5.491 5 C -0.095 4.095 6 C 0.607 3.393 7 O -0.597 6.597 8 N -0.637 5.637 9 C 0.125 3.875 10 C -0.092 4.092 11 C 0.145 3.855 12 C -0.100 4.100 13 C 0.031 3.969 14 N -0.517 5.517 15 C 0.051 3.949 16 C 0.437 3.563 17 O -0.618 6.618 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.276 1.276 27 C 0.074 3.926 28 C 0.034 3.966 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 8.872 22.322 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.135 5.135 3 C -0.091 4.091 4 N -0.210 5.210 5 C -0.223 4.223 6 C 0.399 3.601 7 O -0.479 6.479 8 N -0.369 5.369 9 C 0.004 3.996 10 C -0.094 4.094 11 C 0.023 3.977 12 C -0.138 4.138 13 C -0.095 4.095 14 N -0.242 5.242 15 C -0.080 4.080 16 C 0.224 3.776 17 O -0.504 6.504 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.091 0.909 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.191 1.191 26 H -0.201 1.201 27 C -0.054 4.054 28 C -0.108 4.108 29 H 0.117 0.883 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.270 0.730 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.260 7.620 22.334 26.147 hybrid contribution -1.024 -0.133 -1.448 1.778 sum -12.284 7.487 20.886 25.361 Atomic orbital electron populations 1.22534 0.72633 1.06871 1.05669 1.45617 1.09975 1.05632 1.52230 1.26068 0.84373 0.95223 1.03410 1.70539 1.21680 1.09595 1.19188 1.20356 0.92834 0.91424 1.17652 1.17080 0.82072 0.85781 0.75191 1.90734 1.87042 1.15295 1.54858 1.49981 1.04358 1.11265 1.71310 1.23151 0.78055 0.97130 1.01293 1.22283 0.96728 0.96009 0.94359 1.23091 0.89486 0.83151 1.01928 1.22220 0.90995 1.02676 0.97937 1.23127 0.97853 0.97766 0.90802 1.64486 1.04164 1.54592 1.00967 1.21961 1.00186 0.97355 0.88529 1.20880 0.86391 0.86326 0.83972 1.90507 1.43463 1.34588 1.81832 1.41916 1.39367 1.34105 1.05756 1.19601 1.21406 1.17231 0.88006 0.90894 1.25999 0.98422 0.97181 0.99495 1.69666 1.37525 1.28572 1.20253 0.84971 0.78127 0.78229 0.77261 1.19570 1.19104 1.20149 1.22591 0.90131 0.98753 0.93944 1.22742 0.89900 0.94468 1.03676 0.88277 0.86502 0.88595 0.73006 0.92873 0.86530 0.86484 0.90137 0.87995 0.87945 0.92082 0.88945 0.91225 0.86927 0.76947 0.91224 0.94491 0.93288 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 11.15 127.77 1.42 1.66 16 2 N -0.45 -6.71 3.13 -551.86 -1.73 -8.43 16 3 C 0.19 3.15 12.55 180.10 2.26 5.41 16 4 N -0.49 -12.60 9.70 -188.82 -1.83 -14.43 16 5 C -0.09 -2.87 6.93 40.50 0.28 -2.59 16 6 C 0.61 22.46 8.04 86.63 0.70 23.16 16 7 O -0.60 -26.03 17.61 -4.12 -0.07 -26.11 16 8 N -0.64 -20.54 3.62 -863.78 -3.12 -23.67 16 9 C 0.13 3.66 8.09 85.97 0.70 4.36 16 10 C -0.09 -2.39 1.08 -52.10 -0.06 -2.44 16 11 C 0.15 3.54 7.18 85.96 0.62 4.16 16 12 C -0.10 -1.73 6.40 31.13 0.20 -1.53 16 13 C 0.03 0.69 6.73 86.53 0.58 1.28 16 14 N -0.52 -17.62 5.11 -888.63 -4.54 -22.16 16 15 C 0.05 1.87 5.30 85.56 0.45 2.32 16 16 C 0.44 22.11 7.41 87.66 0.65 22.76 16 17 O -0.62 -36.75 13.87 -3.07 -0.04 -36.80 16 18 N -0.57 -30.85 5.29 -306.99 -1.62 -32.47 16 19 C -0.33 -19.78 9.68 84.04 0.81 -18.97 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 23 Si 0.99 44.59 29.55 68.60 2.03 46.62 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 C 0.07 2.66 4.90 86.15 0.42 3.08 16 28 C 0.03 0.78 11.26 83.72 0.94 1.72 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 34 H 0.12 2.58 8.00 -2.39 -0.02 2.56 16 35 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.17 7.49 -2.39 -0.02 2.16 16 37 H 0.10 1.32 7.87 -2.39 -0.02 1.30 16 38 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 39 H 0.06 1.16 7.68 -2.39 -0.02 1.15 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.24 7.99 -2.39 -0.02 2.22 16 42 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.40 20.06 7.90 -92.70 -0.73 19.33 16 44 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.04 1.33 7.99 -2.38 -0.02 1.32 16 46 H 0.05 2.36 6.41 -2.39 -0.02 2.34 16 47 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -90.48 392.45 0.07 -90.42 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.27 Total: 33.31 kcal Atomic # 6 Polarization: 33.76 SS G_CDS: 10.45 Total: 44.21 kcal Atomic # 7 Polarization: -139.09 SS G_CDS: -12.56 Total: -151.66 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.12 Total: -62.90 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -90.48 0.07 -90.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147329033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.267 kcal (2) G-P(sol) polarization free energy of solvation -90.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds