Wall clock time and date at job start Wed Apr 1 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34495 * 126.47632 * 2 1 4 4 N 1.30854 * 109.16573 * 180.25051 * 3 2 1 5 5 C 1.33323 * 109.68632 * 359.76763 * 4 3 2 6 6 C 1.36669 * 107.78440 * 359.97438 * 5 4 3 7 7 C 1.46759 * 126.84595 * 179.97438 * 6 5 4 8 8 O 1.21682 * 120.00246 * 184.83921 * 7 6 5 9 9 N 1.34780 * 120.00024 * 4.82952 * 7 6 5 10 10 C 1.47883 * 134.34395 * 174.64348 * 9 7 6 11 11 C 1.52386 * 85.59370 * 156.49683 * 10 9 7 12 12 C 1.47885 * 134.34368 * 354.63219 * 9 7 6 13 13 C 1.53642 * 116.38033 * 141.34620 * 11 10 9 14 14 C 1.54597 * 102.81483 * 95.34342 * 13 11 10 15 15 N 1.47562 * 107.32714 * 20.84673 * 14 13 11 16 16 C 1.46891 * 110.99796 * 123.21495 * 15 14 13 17 17 C 1.50700 * 109.47180 * 69.87596 * 16 15 14 18 18 O 1.21290 * 119.99867 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00048 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99511 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00343 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99454 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00291 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47006 * 59.99794 * 24 22 20 26 26 H 1.48501 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47053 * 299.99770 * 24 22 20 28 28 C 1.48143 * 108.68445 * 0.86733 * 15 14 13 29 29 H 1.08992 * 109.47241 * 275.02642 * 1 2 3 30 30 H 1.08997 * 109.46765 * 35.02992 * 1 2 3 31 31 H 1.09003 * 109.47310 * 155.02505 * 1 2 3 32 32 H 1.07999 * 125.41666 * 0.05752 * 3 2 1 33 33 H 1.07998 * 126.10889 * 179.97438 * 5 4 3 34 34 H 1.09004 * 113.85159 * 42.33293 * 10 9 7 35 35 H 1.09001 * 113.97354 * 270.67547 * 10 9 7 36 36 H 1.08999 * 113.85753 * 89.33787 * 12 9 7 37 37 H 1.09003 * 113.84938 * 317.67044 * 12 9 7 38 38 H 1.09008 * 110.74143 * 337.01700 * 13 11 10 39 39 H 1.08995 * 110.90320 * 213.75040 * 13 11 10 40 40 H 1.09003 * 109.87688 * 261.41471 * 14 13 11 41 41 H 1.08996 * 109.87556 * 140.28532 * 14 13 11 42 42 H 1.09006 * 109.47265 * 189.87585 * 16 15 14 43 43 H 1.08998 * 109.47703 * 309.87504 * 16 15 14 44 44 H 0.97001 * 120.00113 * 0.02562 * 19 17 16 45 45 H 0.96994 * 119.99999 * 179.97438 * 23 22 20 46 46 H 1.09007 * 110.40487 * 96.34510 * 28 15 14 47 47 H 1.08996 * 110.40574 * 218.76868 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5138 0.6921 -0.0054 5 6 3.5691 -0.6400 -0.0040 6 6 2.2862 -1.1110 0.0033 7 6 1.8648 -2.5168 0.0067 8 8 0.6839 -2.7982 -0.0756 9 7 2.7859 -3.4962 0.1010 10 6 2.7204 -4.9677 0.2320 11 6 4.1218 -4.9658 -0.3663 12 6 4.2644 -3.5268 0.1142 13 6 5.1149 -5.9824 0.2177 14 6 5.0011 -7.1739 -0.7608 15 7 4.4401 -6.6542 -2.0228 16 6 5.3313 -6.9442 -3.1539 17 6 5.3201 -8.4247 -3.4354 18 8 4.6366 -9.1652 -2.7605 19 7 6.0689 -8.9257 -4.4378 20 6 6.0583 -10.2725 -4.6942 21 1 5.4497 -10.9318 -4.0933 22 6 6.8306 -10.7890 -5.7274 23 7 7.5709 -9.9867 -6.4590 24 14 6.8157 -12.6239 -6.0772 25 1 5.4342 -13.0525 -6.4132 26 1 7.7164 -12.9171 -7.2210 27 1 7.2843 -13.3607 -4.8761 28 6 4.2210 -5.1960 -1.8798 29 1 -0.3633 0.0900 1.0236 30 1 -0.3633 0.8415 -0.5899 31 1 -0.3634 -0.9316 -0.4339 32 1 1.9289 2.1080 0.0009 33 1 4.4672 -1.2397 -0.0078 34 1 1.9694 -5.4340 -0.4058 35 1 2.6818 -5.3192 1.2631 36 1 4.6984 -3.4356 1.1099 37 1 4.7256 -2.8619 -0.6161 38 1 4.8170 -6.2790 1.2235 39 1 6.1277 -5.5797 0.2196 40 1 4.3380 -7.9327 -0.3453 41 1 5.9878 -7.6003 -0.9417 42 1 4.9867 -6.4041 -4.0358 43 1 6.3452 -6.6289 -2.9078 44 1 6.6153 -8.3334 -4.9779 45 1 8.1103 -10.3474 -7.1799 46 1 5.0638 -4.6426 -2.2941 47 1 3.2936 -4.9012 -2.3707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147851784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:04 Heat of formation + Delta-G solvation = 52.704637 kcal Electronic energy + Delta-G solvation = -30040.643447 eV Core-core repulsion = 25840.541768 eV Total energy + Delta-G solvation = -4200.101679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.58793 -41.09399 -38.87850 -38.04690 -36.40935 -34.41797 -33.85598 -31.97652 -31.18976 -30.53697 -28.98112 -27.61452 -27.47651 -26.66899 -25.48866 -24.08357 -22.76356 -21.75345 -21.19764 -19.82494 -19.27531 -18.86517 -17.82539 -17.75385 -16.78240 -16.48110 -16.25684 -15.99137 -15.63783 -15.51125 -15.08099 -14.51624 -14.47685 -14.13387 -14.08336 -13.87356 -13.75365 -13.44737 -13.34993 -13.29754 -13.11386 -12.94716 -12.58441 -12.20101 -11.93771 -11.82609 -11.47090 -11.38980 -11.17017 -11.04165 -10.88097 -10.61709 -10.56360 -10.42932 -10.19538 -10.14011 -10.05789 -9.46829 -9.17332 -8.90087 -8.43702 -7.94758 -7.88885 -6.39565 -3.80253 0.95058 1.97159 2.47868 2.66352 3.01569 3.21364 3.26869 3.31201 3.77897 3.91602 3.93768 4.15093 4.19619 4.24376 4.35805 4.39127 4.62361 4.66242 4.75706 4.78112 4.91658 5.00807 5.06988 5.12238 5.14753 5.25861 5.28304 5.37024 5.42459 5.51376 5.59826 5.60120 5.74070 5.78098 5.79765 5.90654 5.92569 6.07452 6.09134 6.31134 6.42533 6.61883 7.22448 7.24160 7.29889 7.47174 7.56921 7.80044 8.08342 8.64440 9.20510 9.57107 10.09264 10.78212 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.001866 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.290992 B =15005.170909 C =15183.565455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.428 5.428 3 C 0.204 3.796 4 N -0.498 5.498 5 C 0.033 3.967 6 C -0.082 4.082 7 C 0.616 3.384 8 O -0.547 6.547 9 N -0.632 5.632 10 C 0.136 3.864 11 C -0.102 4.102 12 C 0.111 3.889 13 C -0.129 4.129 14 C 0.058 3.942 15 N -0.504 5.504 16 C 0.041 3.959 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.068 3.932 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.213 0.787 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.054 0.946 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 21.998 14.469 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.109 5.109 3 C -0.078 4.078 4 N -0.216 5.216 5 C -0.121 4.121 6 C -0.198 4.198 7 C 0.406 3.594 8 O -0.426 6.426 9 N -0.366 5.366 10 C 0.015 3.985 11 C -0.104 4.104 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.070 4.070 15 N -0.228 5.228 16 C -0.091 4.091 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.060 4.060 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.229 0.771 33 H 0.197 0.803 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.162 21.714 14.571 27.394 hybrid contribution 0.496 -0.465 -0.483 0.834 sum -7.666 21.249 14.088 26.623 Atomic orbital electron populations 1.22360 0.75188 1.06306 1.04091 1.45283 1.08394 1.05750 1.51427 1.25170 0.85601 0.93648 1.03357 1.70181 1.19039 1.12167 1.20173 1.22933 0.95471 0.91282 1.02396 1.20724 0.91573 0.88711 1.18839 1.16337 0.84390 0.82367 0.76318 1.90787 1.16449 1.83586 1.51749 1.49747 1.07093 1.07531 1.72252 1.23023 0.96602 0.77555 1.01362 1.22417 0.96105 0.94511 0.97342 1.23283 0.80174 0.95768 1.01994 1.22648 0.98524 0.95646 1.00028 1.22782 0.99768 0.96044 0.88395 1.63322 1.45994 1.10352 1.03171 1.22082 0.94966 0.97082 0.94952 1.19739 0.84470 0.88793 0.84073 1.90519 1.44450 1.59980 1.51027 1.41862 1.40499 1.08802 1.29203 1.19636 1.25304 0.83220 1.14576 0.88011 1.25253 0.96312 1.00279 0.96165 1.69602 1.28511 1.35625 1.20714 0.85926 0.78219 0.82260 0.77853 1.19923 1.21023 1.19955 1.22641 1.01633 0.89272 0.92443 0.90155 0.89324 0.87280 0.77065 0.80270 0.88741 0.89092 0.88586 0.89163 0.90208 0.90641 0.89772 0.92438 0.89488 0.93230 0.77546 0.91874 0.92820 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.86 59.85 0.65 1.04 16 2 N -0.43 -3.80 3.17 -121.98 -0.39 -4.19 16 3 C 0.20 1.62 12.52 -90.58 -1.13 0.49 16 4 N -0.50 -5.21 11.20 -14.43 -0.16 -5.38 16 5 C 0.03 0.33 11.01 -17.47 -0.19 0.14 16 6 C -0.08 -0.88 6.91 -82.14 -0.57 -1.44 16 7 C 0.62 7.48 8.01 -12.82 -0.10 7.38 16 8 O -0.55 -8.16 15.49 5.21 0.08 -8.08 16 9 N -0.63 -6.36 3.62 -188.38 -0.68 -7.04 16 10 C 0.14 1.34 8.15 -3.60 -0.03 1.31 16 11 C -0.10 -0.93 0.99 -154.84 -0.15 -1.09 16 12 C 0.11 0.79 6.40 -3.60 -0.02 0.77 16 13 C -0.13 -1.19 6.35 -25.56 -0.16 -1.36 16 14 C 0.06 0.82 5.67 -2.62 -0.01 0.80 16 15 N -0.50 -7.86 4.86 -233.13 -1.13 -8.99 16 16 C 0.04 0.70 5.03 -4.98 -0.03 0.68 16 17 C 0.44 10.32 7.43 -10.98 -0.08 10.24 16 18 O -0.58 -15.37 15.12 5.55 0.08 -15.29 16 19 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.07 0.79 6.09 -2.93 -0.02 0.77 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.11 0.94 6.16 -51.93 -0.32 0.62 16 32 H 0.21 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.18 1.36 5.17 -52.49 -0.27 1.09 16 34 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.55 6.52 -51.93 -0.34 0.21 16 38 H 0.08 0.62 7.99 -51.92 -0.41 0.21 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.90 7.31 -51.93 -0.38 0.52 16 42 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 43 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.05 0.56 7.80 -51.92 -0.40 0.15 16 47 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -35.96 386.60 -9.41 -45.37 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.59 Total: 8.03 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -2.09 Total: 11.79 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -1.70 Total: -63.68 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.96 -9.41 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147851784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.073 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds