Wall clock time and date at job start Wed Apr 1 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34495 * 126.47632 * 2 1 4 4 N 1.30854 * 109.16573 * 180.25051 * 3 2 1 5 5 C 1.33323 * 109.68632 * 359.76763 * 4 3 2 6 6 C 1.36669 * 107.78440 * 359.97438 * 5 4 3 7 7 C 1.46759 * 126.84595 * 179.97438 * 6 5 4 8 8 O 1.21682 * 120.00246 * 184.83921 * 7 6 5 9 9 N 1.34780 * 120.00024 * 4.82952 * 7 6 5 10 10 C 1.47883 * 134.34395 * 174.64348 * 9 7 6 11 11 C 1.52386 * 85.59370 * 156.49683 * 10 9 7 12 12 C 1.47885 * 134.34368 * 354.63219 * 9 7 6 13 13 C 1.53642 * 116.38033 * 141.34620 * 11 10 9 14 14 C 1.54597 * 102.81483 * 95.34342 * 13 11 10 15 15 N 1.47562 * 107.32714 * 20.84673 * 14 13 11 16 16 C 1.46891 * 110.99796 * 123.21495 * 15 14 13 17 17 C 1.50700 * 109.47180 * 69.87596 * 16 15 14 18 18 O 1.21290 * 119.99867 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00048 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99511 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00343 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99454 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00291 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47006 * 59.99794 * 24 22 20 26 26 H 1.48501 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47053 * 299.99770 * 24 22 20 28 28 C 1.48143 * 108.68445 * 0.86733 * 15 14 13 29 29 H 1.08992 * 109.47241 * 275.02642 * 1 2 3 30 30 H 1.08997 * 109.46765 * 35.02992 * 1 2 3 31 31 H 1.09003 * 109.47310 * 155.02505 * 1 2 3 32 32 H 1.07999 * 125.41666 * 0.05752 * 3 2 1 33 33 H 1.07998 * 126.10889 * 179.97438 * 5 4 3 34 34 H 1.09004 * 113.85159 * 42.33293 * 10 9 7 35 35 H 1.09001 * 113.97354 * 270.67547 * 10 9 7 36 36 H 1.08999 * 113.85753 * 89.33787 * 12 9 7 37 37 H 1.09003 * 113.84938 * 317.67044 * 12 9 7 38 38 H 1.09008 * 110.74143 * 337.01700 * 13 11 10 39 39 H 1.08995 * 110.90320 * 213.75040 * 13 11 10 40 40 H 1.09003 * 109.87688 * 261.41471 * 14 13 11 41 41 H 1.08996 * 109.87556 * 140.28532 * 14 13 11 42 42 H 1.09006 * 109.47265 * 189.87585 * 16 15 14 43 43 H 1.08998 * 109.47703 * 309.87504 * 16 15 14 44 44 H 0.97001 * 120.00113 * 0.02562 * 19 17 16 45 45 H 0.96994 * 119.99999 * 179.97438 * 23 22 20 46 46 H 1.09007 * 110.40487 * 96.34510 * 28 15 14 47 47 H 1.08996 * 110.40574 * 218.76868 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5138 0.6921 -0.0054 5 6 3.5691 -0.6400 -0.0040 6 6 2.2862 -1.1110 0.0033 7 6 1.8648 -2.5168 0.0067 8 8 0.6839 -2.7982 -0.0756 9 7 2.7859 -3.4962 0.1010 10 6 2.7204 -4.9677 0.2320 11 6 4.1218 -4.9658 -0.3663 12 6 4.2644 -3.5268 0.1142 13 6 5.1149 -5.9824 0.2177 14 6 5.0011 -7.1739 -0.7608 15 7 4.4401 -6.6542 -2.0228 16 6 5.3313 -6.9442 -3.1539 17 6 5.3201 -8.4247 -3.4354 18 8 4.6366 -9.1652 -2.7605 19 7 6.0689 -8.9257 -4.4378 20 6 6.0583 -10.2725 -4.6942 21 1 5.4497 -10.9318 -4.0933 22 6 6.8306 -10.7890 -5.7274 23 7 7.5709 -9.9867 -6.4590 24 14 6.8157 -12.6239 -6.0772 25 1 5.4342 -13.0525 -6.4132 26 1 7.7164 -12.9171 -7.2210 27 1 7.2843 -13.3607 -4.8761 28 6 4.2210 -5.1960 -1.8798 29 1 -0.3633 0.0900 1.0236 30 1 -0.3633 0.8415 -0.5899 31 1 -0.3634 -0.9316 -0.4339 32 1 1.9289 2.1080 0.0009 33 1 4.4672 -1.2397 -0.0078 34 1 1.9694 -5.4340 -0.4058 35 1 2.6818 -5.3192 1.2631 36 1 4.6984 -3.4356 1.1099 37 1 4.7256 -2.8619 -0.6161 38 1 4.8170 -6.2790 1.2235 39 1 6.1277 -5.5797 0.2196 40 1 4.3380 -7.9327 -0.3453 41 1 5.9878 -7.6003 -0.9417 42 1 4.9867 -6.4041 -4.0358 43 1 6.3452 -6.6289 -2.9078 44 1 6.6153 -8.3334 -4.9779 45 1 8.1103 -10.3474 -7.1799 46 1 5.0638 -4.6426 -2.2941 47 1 3.2936 -4.9012 -2.3707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147851784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:03 Heat of formation + Delta-G solvation = 25.965309 kcal Electronic energy + Delta-G solvation = -30041.802951 eV Core-core repulsion = 25840.541768 eV Total energy + Delta-G solvation = -4201.261183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.24065 -41.91985 -40.25350 -39.37207 -37.57598 -35.86844 -35.02348 -33.32785 -32.85407 -31.40715 -29.86330 -28.84060 -28.07761 -27.35956 -26.89177 -25.57261 -23.51913 -22.42437 -22.33864 -20.95728 -20.50457 -19.93683 -19.70445 -18.43755 -17.69748 -17.56142 -17.18474 -17.11155 -16.62198 -16.42540 -16.37685 -16.15942 -15.59011 -15.49954 -15.12939 -14.87115 -14.69588 -14.57965 -14.19957 -14.14608 -13.85531 -13.74336 -13.63191 -13.53555 -13.33592 -13.14729 -12.89701 -12.74976 -12.42752 -12.41481 -12.11990 -12.00476 -11.94302 -11.47705 -11.40672 -11.32400 -10.90363 -10.76031 -10.29257 -9.98634 -9.94752 -9.59210 -9.14045 -8.44685 -5.93096 0.24598 1.31670 1.40294 1.41849 1.52667 1.80498 2.02490 2.08978 2.24568 2.29514 2.76660 3.20173 3.21961 3.30354 3.39923 3.62263 3.72552 3.75036 3.90741 3.98065 4.07494 4.27774 4.31751 4.32497 4.35298 4.40418 4.42953 4.53399 4.55450 4.63028 4.65656 4.65870 4.76020 4.76639 4.86126 4.93359 5.04346 5.13434 5.17747 5.33369 5.42267 5.42632 5.91722 6.06791 6.10225 6.16065 6.52820 6.63466 6.79810 6.99295 7.15356 7.59514 8.15837 8.72504 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.001866 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.290992 B =15005.170909 C =15183.565455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.435 5.435 3 C 0.218 3.782 4 N -0.530 5.530 5 C 0.039 3.961 6 C -0.110 4.110 7 C 0.609 3.391 8 O -0.590 6.590 9 N -0.633 5.633 10 C 0.129 3.871 11 C -0.093 4.093 12 C 0.122 3.878 13 C -0.111 4.111 14 C 0.056 3.944 15 N -0.533 5.533 16 C 0.055 3.945 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.069 3.931 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.199 0.801 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.076 0.924 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 24.352 15.314 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.115 5.115 3 C -0.064 4.064 4 N -0.249 5.249 5 C -0.116 4.116 6 C -0.227 4.227 7 C 0.400 3.600 8 O -0.472 6.472 9 N -0.366 5.366 10 C 0.007 3.993 11 C -0.094 4.094 12 C 0.001 3.999 13 C -0.149 4.149 14 C -0.072 4.072 15 N -0.257 5.257 16 C -0.076 4.076 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.058 4.058 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.269 0.731 33 H 0.215 0.785 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.873 24.088 15.417 29.413 hybrid contribution 0.043 -1.168 -0.741 1.383 sum -6.830 22.920 14.676 28.060 Atomic orbital electron populations 1.22459 0.74047 1.06208 1.05187 1.45521 1.09250 1.05569 1.51148 1.26001 0.84899 0.94862 1.00642 1.70217 1.20447 1.12394 1.21806 1.23261 0.95719 0.91443 1.01135 1.20685 0.92430 0.88466 1.21110 1.16644 0.84103 0.83333 0.75906 1.90759 1.18194 1.84310 1.53962 1.49841 1.08386 1.07125 1.71273 1.23110 0.96419 0.77747 1.01998 1.22253 0.95525 0.96198 0.95458 1.23496 0.78372 0.93944 1.04114 1.22563 0.99884 0.93081 0.99402 1.22701 0.97690 0.97637 0.89178 1.63166 1.46125 1.13222 1.03225 1.21905 0.96962 0.92272 0.96460 1.20849 0.82570 0.91334 0.82436 1.90488 1.45702 1.61922 1.52070 1.41937 1.41288 1.08164 1.30056 1.19596 1.26451 0.84466 1.15591 0.90456 1.26021 0.95470 1.04467 0.95426 1.69664 1.28527 1.37181 1.20815 0.85008 0.78278 0.77131 0.78028 1.19948 1.19489 1.19629 1.22639 1.01705 0.86934 0.94496 0.89094 0.85994 0.90105 0.73080 0.78450 0.91638 0.87189 0.85385 0.87480 0.88205 0.88160 0.92676 0.94358 0.87954 0.90687 0.77059 0.91359 0.90586 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.86 127.77 1.39 2.09 16 2 N -0.43 -7.04 3.17 -539.82 -1.71 -8.75 16 3 C 0.22 2.87 12.52 180.33 2.26 5.13 16 4 N -0.53 -9.81 11.20 -199.56 -2.24 -12.05 16 5 C 0.04 0.68 11.01 84.10 0.93 1.61 16 6 C -0.11 -2.24 6.91 40.01 0.28 -1.97 16 7 C 0.61 14.70 8.01 86.47 0.69 15.40 16 8 O -0.59 -18.36 15.49 -4.29 -0.07 -18.43 16 9 N -0.63 -11.96 3.62 -868.13 -3.14 -15.10 16 10 C 0.13 2.46 8.15 85.91 0.70 3.16 16 11 C -0.09 -1.50 0.99 -52.15 -0.05 -1.55 16 12 C 0.12 1.32 6.40 85.91 0.55 1.87 16 13 C -0.11 -1.74 6.35 31.35 0.20 -1.55 16 14 C 0.06 1.57 5.67 86.72 0.49 2.06 16 15 N -0.53 -16.52 4.86 -891.49 -4.33 -20.85 16 16 C 0.06 1.88 5.03 85.56 0.43 2.31 16 17 C 0.44 21.04 7.43 87.66 0.65 21.69 16 18 O -0.62 -34.31 15.12 -3.06 -0.05 -34.36 16 19 N -0.58 -29.72 5.29 -306.98 -1.62 -31.35 16 20 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.71 7.16 -2.92 -0.02 4.69 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 24 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.07 1.52 6.09 86.20 0.53 2.04 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 1.45 6.16 -2.39 -0.01 1.43 16 32 H 0.25 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.20 2.36 5.17 -2.91 -0.02 2.35 16 34 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 35 H 0.11 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.87 6.52 -2.39 -0.02 0.85 16 38 H 0.10 1.23 7.99 -2.38 -0.02 1.21 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.21 7.31 -2.39 -0.02 1.19 16 42 H 0.10 3.15 8.07 -2.38 -0.02 3.13 16 43 H 0.08 2.18 7.96 -2.39 -0.02 2.16 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.08 1.35 7.80 -2.38 -0.02 1.33 16 47 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 Total: -1.00 -82.70 386.60 -0.25 -82.95 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.28 Total: 28.36 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 10.32 Total: 33.87 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -12.76 Total: -137.68 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.11 Total: -52.79 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -82.70 -0.25 -82.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147851784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.912 kcal (2) G-P(sol) polarization free energy of solvation -82.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds