Wall clock time and date at job start Wed Apr 1 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50709 * 109.46607 * 289.06543 * 4 3 2 6 6 O 1.21287 * 120.00316 * 354.55123 * 5 4 3 7 7 N 1.34775 * 119.99687 * 174.56195 * 5 4 3 8 8 C 1.37099 * 119.99823 * 180.02562 * 7 5 4 9 9 H 1.07998 * 120.00152 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99856 * 179.97438 * 8 7 5 11 11 N 1.31409 * 120.00009 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47077 * 59.99915 * 12 10 8 14 14 H 1.48502 * 109.47120 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46914 * 299.99776 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46498 * 109.47149 * 55.92978 * 19 16 3 21 21 C 1.34780 * 120.00212 * 174.91257 * 20 19 16 22 22 O 1.21282 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72374 * 21 20 19 24 24 C 1.53784 * 113.61191 * 279.41220 * 23 21 20 25 25 C 1.53962 * 87.01593 * 220.04723 * 24 23 21 26 26 F 1.39903 * 113.53759 * 270.80862 * 25 24 23 27 27 F 1.39902 * 113.66755 * 139.93339 * 25 24 23 28 28 C 1.53774 * 87.11302 * 25.36038 * 25 24 23 29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00311 * 359.97438 * 7 5 4 37 37 H 0.97002 * 119.99798 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.46702 * 59.99884 * 18 16 3 39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96999 * 119.99666 * 354.90298 * 20 19 16 44 44 H 1.09000 * 112.85387 * 50.60083 * 23 21 20 45 45 H 1.08998 * 113.61753 * 334.56098 * 24 23 21 46 46 H 1.09000 * 113.61504 * 105.47690 * 24 23 21 47 47 H 1.08994 * 113.61668 * 220.08751 * 28 25 24 48 48 H 1.09010 * 113.61337 * 89.18565 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4745 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3317 -4.6306 9 1 3.9648 0.6129 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 2.0773 2.5990 -6.2502 12 14 4.0897 1.0106 -7.2982 13 1 3.9226 -0.4645 -7.3363 14 1 3.6931 1.5883 -8.6076 15 1 5.5110 1.3409 -7.0222 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5762 21 6 3.5969 0.4980 3.6983 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2089 3.8476 24 6 5.5215 -1.0694 3.1225 25 6 6.4139 -1.3501 4.3453 26 9 7.6901 -0.7853 4.2471 27 9 6.4422 -2.6970 4.7225 28 6 5.4261 -0.5019 5.1635 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4794 -0.9090 31 1 -0.3634 -1.0269 0.0392 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8626 37 1 1.9474 2.8731 -7.1715 38 1 1.9842 4.0568 0.2996 39 1 1.7433 4.0623 2.0630 40 1 3.2249 3.3604 1.3693 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.6938 1.0760 3.6356 45 1 4.7244 -1.8003 2.9868 46 1 6.0814 -0.8771 2.2073 47 1 5.9088 0.1478 5.8934 48 1 4.6027 -1.0774 5.5867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152665798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:54 Heat of formation + Delta-G solvation = -142.822760 kcal Electronic energy + Delta-G solvation = -31606.566778 eV Core-core repulsion = 26947.297209 eV Total energy + Delta-G solvation = -4659.269569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.05427 -47.38790 -40.44033 -39.25841 -37.65950 -36.90412 -34.58590 -33.83873 -31.87723 -31.28009 -29.96348 -27.46488 -26.68643 -26.57011 -25.35648 -24.17658 -22.77990 -21.43734 -20.10037 -19.76178 -18.82840 -18.32743 -17.81835 -17.06721 -16.80620 -16.59289 -16.42217 -15.92481 -15.76172 -15.31237 -15.12261 -14.62863 -14.34168 -14.27163 -14.20074 -13.92336 -13.72610 -13.65515 -13.47412 -13.16884 -12.95574 -12.86702 -12.52724 -12.33282 -12.23890 -12.06798 -11.82675 -11.73391 -11.66009 -11.60868 -11.49476 -11.37765 -11.09270 -10.75546 -10.62763 -10.49265 -10.46969 -10.23934 -9.99407 -9.49577 -9.12282 -8.50749 -8.00420 -7.93763 -6.44471 -3.85340 2.40148 2.96225 3.17496 3.19799 3.23643 3.27526 3.47669 3.84447 3.88786 3.92018 4.01051 4.16188 4.21427 4.60696 4.77967 4.88746 4.95038 5.05966 5.09096 5.13329 5.15679 5.22479 5.29393 5.32127 5.35659 5.38312 5.47961 5.52391 5.52608 5.64428 5.71163 5.77544 5.83021 5.92929 6.00381 6.16615 6.19996 6.27878 6.33818 6.46063 7.17160 7.27910 7.45197 7.52076 8.03336 8.09057 8.59054 9.15594 9.52123 10.03827 10.73220 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.002584 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.258793 B =10834.847633 C =12451.301624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.048 3.952 3 N -0.506 5.506 4 C 0.038 3.962 5 C 0.445 3.555 6 O -0.577 6.577 7 N -0.566 5.566 8 C -0.299 4.299 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.903 5.903 12 Si 0.929 3.071 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.062 3.938 17 H 0.059 0.941 18 C -0.147 4.147 19 C 0.126 3.874 20 N -0.707 5.707 21 C 0.526 3.474 22 O -0.546 6.546 23 C -0.133 4.133 24 C -0.148 4.148 25 C 0.254 3.746 26 F -0.178 7.178 27 F -0.189 7.189 28 C -0.140 4.140 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.391 0.609 37 H 0.272 0.728 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.415 0.585 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -0.518 19.031 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.079 4.079 3 N -0.230 5.230 4 C -0.093 4.093 5 C 0.230 3.770 6 O -0.461 6.461 7 N -0.203 5.203 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.756 3.244 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.047 4.047 17 H 0.076 0.924 18 C -0.204 4.204 19 C 0.002 3.998 20 N -0.359 5.359 21 C 0.311 3.689 22 O -0.424 6.424 23 C -0.154 4.154 24 C -0.186 4.186 25 C 0.218 3.782 26 F -0.159 7.159 27 F -0.169 7.169 28 C -0.179 4.179 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.224 0.776 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.252 0.748 44 H 0.145 0.855 45 H 0.135 0.865 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.710 -1.212 19.700 19.750 hybrid contribution -0.420 0.231 -1.458 1.535 sum 0.290 -0.982 18.241 18.270 Atomic orbital electron populations 1.22490 0.98909 1.02267 1.01672 1.22239 0.91882 0.89908 1.03905 1.61857 1.58408 1.01838 1.00905 1.21976 0.98125 0.99417 0.89783 1.19719 0.87548 0.86432 0.83269 1.90503 1.36486 1.36886 1.82197 1.41872 1.33242 1.40007 1.05139 1.19628 1.14377 1.23019 0.85818 0.88008 1.25244 0.97431 0.96756 0.98457 1.69599 1.32428 1.32016 1.20361 0.85941 0.79962 0.79120 0.79339 1.19935 1.21008 1.19894 1.21952 0.98014 0.94209 0.90547 0.92362 1.21892 1.01534 0.95074 1.01934 1.21455 0.81821 0.99915 0.96591 1.45907 1.09645 1.60929 1.19463 1.20007 0.89449 0.77339 0.82067 1.90698 1.58092 1.52625 1.41019 1.22528 0.95310 0.99458 0.98096 1.24059 0.99506 0.97148 0.97927 1.22050 0.80422 0.76560 0.99205 1.93032 1.41879 1.84207 1.96790 1.93022 1.96722 1.34810 1.92371 1.23978 0.98555 0.98266 0.97072 0.92788 0.92369 0.92229 0.88934 0.90989 0.93082 0.89122 0.77598 0.91838 0.91872 0.92255 0.91681 0.91272 0.90959 0.74753 0.85514 0.86478 0.87428 0.88386 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 9.00 37.16 0.33 -1.98 16 2 C 0.05 0.67 5.19 -3.82 -0.02 0.65 16 3 N -0.51 -6.89 3.61 -228.08 -0.82 -7.71 16 4 C 0.04 0.60 5.22 -4.98 -0.03 0.58 16 5 C 0.45 9.69 7.32 -10.98 -0.08 9.61 16 6 O -0.58 -14.36 14.65 5.55 0.08 -14.28 16 7 N -0.57 -13.63 5.29 -10.96 -0.06 -13.69 16 8 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 9 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 10 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 12 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 C 0.06 0.64 1.68 -67.71 -0.11 0.53 16 17 H 0.06 0.58 6.69 -51.93 -0.35 0.24 16 18 C -0.15 -1.41 8.99 37.15 0.33 -1.08 16 19 C 0.13 1.30 4.41 -4.04 -0.02 1.28 16 20 N -0.71 -7.24 4.89 -60.29 -0.29 -7.53 16 21 C 0.53 5.70 7.35 -10.99 -0.08 5.62 16 22 O -0.55 -7.63 15.91 5.56 0.09 -7.54 16 23 C -0.13 -1.12 4.12 -90.96 -0.37 -1.50 16 24 C -0.15 -1.29 7.43 -25.82 -0.19 -1.48 16 25 C 0.25 2.43 3.28 -25.83 -0.08 2.34 16 26 F -0.18 -1.89 17.38 2.25 0.04 -1.85 16 27 F -0.19 -2.11 17.41 2.25 0.04 -2.08 16 28 C -0.14 -1.18 7.18 -25.92 -0.19 -1.37 16 29 H 0.05 0.56 5.75 -51.93 -0.30 0.26 16 30 H 0.06 0.74 6.52 -51.93 -0.34 0.41 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.63 6.44 -51.93 -0.33 1.30 16 33 H 0.07 0.94 6.41 -51.93 -0.33 0.61 16 34 H 0.05 0.76 6.21 -51.93 -0.32 0.44 16 35 H 0.09 1.30 5.87 -51.93 -0.30 1.00 16 36 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 41 H 0.07 0.76 5.93 -51.93 -0.31 0.46 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.42 4.29 7.39 -40.82 -0.30 3.99 16 44 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.12 1.03 8.09 -51.93 -0.42 0.61 16 46 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.12 1.14 7.45 -51.92 -0.39 0.76 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -30.95 387.86 -6.90 -37.84 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.76 Total: 13.16 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.75 Total: 5.52 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.45 Total: -52.20 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.95 -6.90 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152665798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.979 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds