Wall clock time and date at job start Wed Apr 1 2020 04:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50709 * 109.46607 * 289.06543 * 4 3 2 6 6 O 1.21287 * 120.00316 * 354.55123 * 5 4 3 7 7 N 1.34775 * 119.99687 * 174.56195 * 5 4 3 8 8 C 1.37099 * 119.99823 * 180.02562 * 7 5 4 9 9 H 1.07998 * 120.00152 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99856 * 179.97438 * 8 7 5 11 11 N 1.31409 * 120.00009 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47077 * 59.99915 * 12 10 8 14 14 H 1.48502 * 109.47120 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46914 * 299.99776 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46498 * 109.47149 * 55.92978 * 19 16 3 21 21 C 1.34780 * 120.00212 * 174.91257 * 20 19 16 22 22 O 1.21282 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72374 * 21 20 19 24 24 C 1.53784 * 113.61191 * 279.41220 * 23 21 20 25 25 C 1.53962 * 87.01593 * 220.04723 * 24 23 21 26 26 F 1.39903 * 113.53759 * 270.80862 * 25 24 23 27 27 F 1.39902 * 113.66755 * 139.93339 * 25 24 23 28 28 C 1.53774 * 87.11302 * 25.36038 * 25 24 23 29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00311 * 359.97438 * 7 5 4 37 37 H 0.97002 * 119.99798 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.46702 * 59.99884 * 18 16 3 39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96999 * 119.99666 * 354.90298 * 20 19 16 44 44 H 1.09000 * 112.85387 * 50.60083 * 23 21 20 45 45 H 1.08998 * 113.61753 * 334.56098 * 24 23 21 46 46 H 1.09000 * 113.61504 * 105.47690 * 24 23 21 47 47 H 1.08994 * 113.61668 * 220.08751 * 28 25 24 48 48 H 1.09010 * 113.61337 * 89.18565 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4745 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3317 -4.6306 9 1 3.9648 0.6129 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 2.0773 2.5990 -6.2502 12 14 4.0897 1.0106 -7.2982 13 1 3.9226 -0.4645 -7.3363 14 1 3.6931 1.5883 -8.6076 15 1 5.5110 1.3409 -7.0222 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5762 21 6 3.5969 0.4980 3.6983 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2089 3.8476 24 6 5.5215 -1.0694 3.1225 25 6 6.4139 -1.3501 4.3453 26 9 7.6901 -0.7853 4.2471 27 9 6.4422 -2.6970 4.7225 28 6 5.4261 -0.5019 5.1635 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4794 -0.9090 31 1 -0.3634 -1.0269 0.0392 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8626 37 1 1.9474 2.8731 -7.1715 38 1 1.9842 4.0568 0.2996 39 1 1.7433 4.0623 2.0630 40 1 3.2249 3.3604 1.3693 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.6938 1.0760 3.6356 45 1 4.7244 -1.8003 2.9868 46 1 6.0814 -0.8771 2.2073 47 1 5.9088 0.1478 5.8934 48 1 4.6027 -1.0774 5.5867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152665798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:45 Heat of formation + Delta-G solvation = -164.047377 kcal Electronic energy + Delta-G solvation = -31607.487147 eV Core-core repulsion = 26947.297209 eV Total energy + Delta-G solvation = -4660.189938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -49.86380 -48.21303 -41.33626 -40.51948 -39.07378 -37.79842 -35.94703 -35.38283 -33.22262 -32.77768 -31.15555 -28.28140 -28.05386 -27.26814 -26.46172 -25.64448 -23.81968 -22.28414 -21.24760 -20.79056 -20.24058 -19.62616 -19.14420 -17.87468 -17.85663 -17.55937 -17.35799 -17.13433 -16.76664 -16.50946 -16.27163 -16.15670 -15.66056 -15.32817 -15.07815 -15.05214 -15.00417 -14.71026 -14.49608 -14.39439 -13.93920 -13.66872 -13.63224 -13.52347 -13.40293 -13.06980 -13.03520 -12.97564 -12.70373 -12.53011 -12.52075 -12.44142 -12.39532 -12.29965 -12.12160 -11.68648 -11.57607 -11.47421 -11.36370 -10.89080 -10.22468 -9.99315 -9.94509 -9.12895 -8.42626 -5.90216 1.41223 1.43049 1.53052 1.55514 2.13873 2.15737 2.30569 2.45031 2.74604 2.77844 3.18619 3.25107 3.29088 3.41627 3.49898 3.74989 4.00258 4.08299 4.11410 4.28158 4.31671 4.32915 4.37493 4.39227 4.45769 4.51215 4.54931 4.61598 4.64208 4.71322 4.72354 4.79304 4.90787 5.04227 5.07634 5.07825 5.12434 5.32954 5.41534 5.44706 5.50618 5.92981 6.12731 6.25110 6.59972 6.66366 7.18716 7.24186 7.64219 8.20182 8.74675 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.002584 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.258793 B =10834.847633 C =12451.301624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.052 3.948 5 C 0.446 3.554 6 O -0.610 6.610 7 N -0.579 5.579 8 C -0.327 4.327 9 H 0.079 0.921 10 C -0.014 4.014 11 N -0.923 5.923 12 Si 0.988 3.012 13 H -0.273 1.273 14 H -0.273 1.273 15 H -0.272 1.272 16 C 0.067 3.933 17 H 0.073 0.927 18 C -0.145 4.145 19 C 0.128 3.872 20 N -0.703 5.703 21 C 0.528 3.472 22 O -0.578 6.578 23 C -0.126 4.126 24 C -0.146 4.146 25 C 0.249 3.751 26 F -0.184 7.184 27 F -0.200 7.200 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.394 0.606 37 H 0.276 0.724 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.416 0.584 44 H 0.149 0.851 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 0.522 19.823 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.074 4.074 3 N -0.239 5.239 4 C -0.079 4.079 5 C 0.234 3.766 6 O -0.495 6.495 7 N -0.217 5.217 8 C -0.457 4.457 9 H 0.097 0.903 10 C -0.213 4.213 11 N -0.564 5.564 12 Si 0.812 3.188 13 H -0.199 1.199 14 H -0.198 1.198 15 H -0.197 1.197 16 C -0.040 4.040 17 H 0.091 0.909 18 C -0.203 4.203 19 C 0.004 3.996 20 N -0.354 5.354 21 C 0.314 3.686 22 O -0.459 6.459 23 C -0.147 4.147 24 C -0.184 4.184 25 C 0.212 3.788 26 F -0.165 7.165 27 F -0.181 7.181 28 C -0.172 4.172 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.253 0.747 44 H 0.166 0.834 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.133 0.867 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.284 -0.156 20.496 20.499 hybrid contribution -0.287 -0.123 -1.621 1.651 sum -0.003 -0.279 18.875 18.877 Atomic orbital electron populations 1.22414 0.97097 1.02972 1.02109 1.22073 0.93311 0.89900 1.02095 1.61792 1.59361 1.01870 1.00868 1.21811 0.97260 1.00127 0.88726 1.20780 0.87150 0.85049 0.83667 1.90480 1.38080 1.38142 1.82826 1.41951 1.33455 1.40620 1.05701 1.19586 1.15082 1.23748 0.87302 0.90304 1.25956 0.98499 0.96917 0.99923 1.69662 1.33236 1.32579 1.20959 0.85061 0.78332 0.78351 0.77056 1.19876 1.19805 1.19710 1.22008 0.98810 0.94204 0.89027 0.90897 1.21896 1.01291 0.94461 1.02621 1.21455 0.81729 0.99716 0.96662 1.45922 1.09778 1.60481 1.19256 1.20302 0.90103 0.76614 0.81569 1.90687 1.59093 1.54006 1.42084 1.22563 0.94063 1.00036 0.98011 1.24052 0.99244 0.97245 0.97903 1.22241 0.80325 0.76121 1.00071 1.93018 1.42371 1.84212 1.96870 1.92996 1.96763 1.35825 1.92536 1.23938 0.97864 0.98048 0.97349 0.90662 0.93272 0.91677 0.93193 0.90280 0.91607 0.86977 0.77257 0.91497 0.92226 0.90208 0.92155 0.91908 0.90011 0.74668 0.83375 0.86829 0.86992 0.86716 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.15 9.00 71.98 0.65 -3.50 16 2 C 0.05 1.47 5.19 86.30 0.45 1.92 16 3 N -0.51 -13.28 3.61 -875.52 -3.16 -16.44 16 4 C 0.05 1.57 5.22 85.56 0.45 2.01 16 5 C 0.45 19.60 7.32 87.66 0.64 20.24 16 6 O -0.61 -31.06 14.65 -3.05 -0.04 -31.11 16 7 N -0.58 -28.34 5.29 -306.98 -1.62 -29.96 16 8 C -0.33 -18.00 9.68 84.04 0.81 -17.18 16 9 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 10 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 11 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 12 Si 0.99 42.23 29.55 68.60 2.03 44.25 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 C 0.07 1.23 1.68 44.91 0.08 1.31 16 17 H 0.07 1.19 6.69 -2.39 -0.02 1.17 16 18 C -0.15 -2.37 8.99 71.98 0.65 -1.72 16 19 C 0.13 2.34 4.41 86.38 0.38 2.72 16 20 N -0.70 -13.19 4.89 -463.06 -2.26 -15.45 16 21 C 0.53 10.67 7.35 87.65 0.64 11.31 16 22 O -0.58 -15.48 15.91 -3.04 -0.05 -15.53 16 23 C -0.13 -1.93 4.12 -11.02 -0.05 -1.98 16 24 C -0.15 -2.42 7.43 31.18 0.23 -2.19 16 25 C 0.25 4.55 3.28 31.18 0.10 4.65 16 26 F -0.18 -3.70 17.38 44.97 0.78 -2.92 16 27 F -0.20 -4.45 17.41 44.97 0.78 -3.66 16 28 C -0.13 -2.08 7.18 31.12 0.22 -1.86 16 29 H 0.07 1.35 5.75 -2.39 -0.01 1.33 16 30 H 0.05 1.18 6.52 -2.39 -0.02 1.16 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.80 6.44 -2.39 -0.02 1.79 16 33 H 0.08 2.02 6.41 -2.39 -0.02 2.00 16 34 H 0.07 1.84 6.21 -2.39 -0.01 1.83 16 35 H 0.11 2.97 5.87 -2.39 -0.01 2.96 16 36 H 0.39 18.46 7.90 -92.70 -0.73 17.73 16 37 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 38 H 0.06 1.03 6.24 -2.39 -0.01 1.02 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.05 7.23 -2.39 -0.02 1.04 16 41 H 0.06 1.25 5.93 -2.38 -0.01 1.24 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.42 7.92 7.39 -92.71 -0.68 7.24 16 44 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.11 1.97 8.09 -2.39 -0.02 1.95 16 46 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 2.06 7.45 -2.38 -0.02 2.04 16 Total: -1.00 -67.53 387.86 2.07 -65.47 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.39 Total: 38.55 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.73 Total: 15.48 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -6.76 Total: -110.53 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.09 Total: -46.63 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 1.56 Total: -6.58 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.53 2.07 -65.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152665798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.582 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds