Wall clock time and date at job start Wed Apr 1 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47022 * 2 1 4 4 C 1.46899 * 110.99970 * 165.13355 * 3 2 1 5 5 C 1.50700 * 109.47044 * 284.49313 * 4 3 2 6 6 O 1.21297 * 119.99912 * 354.80786 * 5 4 3 7 7 N 1.34775 * 120.00445 * 174.81475 * 5 4 3 8 8 C 1.37092 * 120.00352 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00309 * 359.97438 * 8 7 5 10 10 C 1.38949 * 119.99842 * 179.97438 * 8 7 5 11 11 N 1.31409 * 120.00101 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99904 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46936 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47039 * 119.99986 * 12 10 8 15 15 H 1.48505 * 109.46685 * 239.99806 * 12 10 8 16 16 C 1.46895 * 111.00014 * 289.08576 * 3 2 1 17 17 H 1.09000 * 109.47435 * 48.58807 * 16 3 2 18 18 C 1.53001 * 109.47335 * 288.58649 * 16 3 2 19 19 C 1.52999 * 109.47229 * 168.58545 * 16 3 2 20 20 N 1.46500 * 109.46979 * 304.50480 * 19 16 3 21 21 C 1.34776 * 120.00280 * 184.00052 * 20 19 16 22 22 O 1.21656 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.47053 * 120.00281 * 179.97438 * 21 20 19 24 24 C 1.38009 * 125.92013 * 179.69113 * 23 21 20 25 25 C 1.39351 * 107.48396 * 179.84453 * 24 23 21 26 26 C 1.38081 * 107.51638 * 0.41630 * 25 24 23 27 27 C 1.43196 * 125.89257 * 179.72242 * 26 25 24 28 28 N 8.40166 * 59.94390 * 41.36771 * 2 1 3 29 29 N 1.36717 * 108.20777 * 359.74383 * 26 25 24 30 30 H 0.96999 * 125.68339 * 179.97438 * 29 26 25 31 31 H 1.08998 * 109.47773 * 61.83721 * 1 2 3 32 32 H 1.09003 * 109.47280 * 181.83831 * 1 2 3 33 33 H 1.09000 * 109.47127 * 301.83084 * 1 2 3 34 34 H 1.08995 * 109.47156 * 120.00155 * 2 1 3 35 35 H 1.08996 * 109.46853 * 240.00292 * 2 1 3 36 36 H 1.09004 * 109.46927 * 44.48789 * 4 3 2 37 37 H 1.08996 * 109.46971 * 164.48992 * 4 3 2 38 38 H 0.97005 * 119.99335 * 359.97438 * 7 5 4 39 39 H 0.97001 * 120.00045 * 180.02562 * 11 10 8 40 40 H 1.08998 * 109.46932 * 299.99653 * 18 16 3 41 41 H 1.08995 * 109.47455 * 60.00011 * 18 16 3 42 42 H 1.09001 * 109.46965 * 180.02562 * 18 16 3 43 43 H 1.09000 * 109.47192 * 64.50172 * 19 16 3 44 44 H 1.08999 * 109.47619 * 184.50926 * 19 16 3 45 45 H 0.97001 * 120.00140 * 3.99807 * 20 19 16 46 46 H 1.08000 * 126.25253 * 359.96165 * 24 23 21 47 47 H 1.08006 * 126.23762 * 180.13738 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4448 1.4395 0.3519 5 6 3.6049 1.2218 1.8344 6 8 2.6249 1.1332 2.5437 7 7 4.8369 1.1256 2.3724 8 6 4.9824 0.9280 3.7212 9 1 4.1099 0.8498 4.3528 10 6 6.2526 0.8283 4.2756 11 7 7.3143 0.9229 3.5070 12 14 6.4510 0.5584 6.1134 13 1 5.1116 0.4867 6.7505 14 1 7.1815 -0.7125 6.3510 15 1 7.2178 1.6871 6.6994 16 6 1.7723 2.0308 -1.2960 17 1 0.7378 1.8616 -1.5948 18 6 2.7108 1.4376 -2.3488 19 6 2.0283 3.5343 -1.1738 20 7 1.2069 4.0831 -0.0919 21 6 1.2064 5.4094 0.1474 22 8 1.8884 6.1509 -0.5346 23 6 0.3815 5.9603 1.2330 24 6 0.2934 7.2913 1.5874 25 6 -0.5953 7.3818 2.6569 26 6 -1.0295 6.1033 2.9459 27 6 -1.9498 5.7434 3.9822 28 7 -2.6780 5.4575 4.8059 29 7 -0.4286 5.2404 2.0721 30 1 -0.5543 4.2788 2.0499 31 1 -0.3634 0.4850 -0.9059 32 1 -0.3634 -1.0272 0.0330 33 1 -0.3633 0.5420 0.8731 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.9828 0.6614 -0.1898 37 1 3.8485 2.4154 0.0822 38 1 5.6206 1.1961 1.8051 39 1 8.2010 0.8529 3.8940 40 1 3.7453 1.6070 -2.0500 41 1 2.5285 0.3666 -2.4359 42 1 2.5275 1.9172 -3.3103 43 1 3.0818 3.7067 -0.9534 44 1 1.7683 4.0246 -2.1118 45 1 0.6634 3.4919 0.4521 46 1 0.8160 8.1126 1.1198 47 1 -0.8874 8.2865 3.1695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152775352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:22 Heat of formation + Delta-G solvation = 11.360942 kcal Electronic energy + Delta-G solvation = -30623.365620 eV Core-core repulsion = 26421.471144 eV Total energy + Delta-G solvation = -4201.894476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.63287 -39.73168 -38.77880 -37.38810 -36.66383 -34.67029 -33.88587 -32.10419 -31.40825 -31.26888 -30.29283 -29.94558 -26.76298 -26.48488 -24.31121 -23.81538 -22.63175 -21.36094 -20.54784 -20.33983 -19.67826 -18.80266 -17.87079 -17.53000 -16.76593 -16.22970 -15.67732 -15.37462 -15.04904 -14.85340 -14.70770 -14.49106 -14.35760 -14.04851 -13.94268 -13.72027 -13.67746 -13.34364 -13.22629 -13.10515 -12.96831 -12.78075 -12.60826 -12.44761 -12.24749 -12.13052 -11.96121 -11.59860 -11.45258 -11.34463 -11.13822 -10.80507 -10.54354 -10.37413 -10.25505 -10.25294 -9.52860 -9.41279 -9.17582 -8.56903 -8.51782 -8.02996 -7.97788 -6.44647 -3.85503 0.77844 1.97491 1.99484 2.84041 3.00666 3.13836 3.20310 3.24878 3.24979 3.31261 3.73443 3.80429 3.87391 4.18641 4.56093 4.63869 4.84243 4.89846 5.00855 5.02404 5.09166 5.19286 5.25152 5.28559 5.40119 5.50055 5.53101 5.62729 5.64617 5.71980 5.76301 5.80709 5.85734 5.97550 6.01982 6.16816 6.23265 6.26477 6.30677 6.33293 6.47857 6.82352 7.11724 7.16252 7.19626 7.43608 7.52184 8.03055 8.06091 8.58289 9.15422 9.51665 10.02866 10.73088 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006965 B = 0.003592 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4019.099765 B = 7794.237938 C = 9738.530920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 N -0.509 5.509 4 C 0.041 3.959 5 C 0.444 3.556 6 O -0.578 6.578 7 N -0.565 5.565 8 C -0.298 4.298 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.927 3.073 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.061 3.939 17 H 0.092 0.908 18 C -0.185 4.185 19 C 0.130 3.870 20 N -0.709 5.709 21 C 0.585 3.415 22 O -0.528 6.528 23 C 0.003 3.997 24 C -0.117 4.117 25 C -0.126 4.126 26 C 0.089 3.911 27 C 0.276 3.724 28 N -0.398 5.398 29 N -0.509 5.509 30 H 0.426 0.574 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.406 0.594 46 H 0.161 0.839 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.493 6.006 -12.176 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.233 5.233 4 C -0.090 4.090 5 C 0.229 3.771 6 O -0.462 6.462 7 N -0.202 5.202 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.178 4.178 11 N -0.542 5.542 12 Si 0.754 3.246 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.207 1.207 16 C -0.048 4.048 17 H 0.110 0.890 18 C -0.245 4.245 19 C 0.006 3.994 20 N -0.360 5.360 21 C 0.370 3.630 22 O -0.404 6.404 23 C -0.116 4.116 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.029 4.029 27 C -0.040 4.040 28 N -0.075 5.075 29 N -0.106 5.106 30 H 0.266 0.734 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.242 0.758 46 H 0.178 0.822 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.841 6.059 -10.544 18.424 hybrid contribution 1.288 -1.340 -0.032 1.859 sum -12.553 4.719 -10.575 17.078 Atomic orbital electron populations 1.21742 0.95314 1.01287 1.01686 1.22091 0.95719 0.88451 1.01176 1.61770 1.16811 1.17904 1.26779 1.21928 0.88727 1.01956 0.96380 1.19735 0.84191 0.84534 0.88651 1.90499 1.38232 1.55395 1.62086 1.41882 1.06081 1.63276 1.08931 1.19702 0.93645 1.46172 0.83243 0.87980 1.25240 0.94915 0.97400 1.00283 1.69613 0.98323 1.50318 1.35953 0.85840 0.78553 0.77843 0.82353 1.19291 1.20762 1.20699 1.22071 1.00527 0.92986 0.89206 0.89021 1.22403 1.00832 1.01703 0.99514 1.21472 0.95810 0.92187 0.89962 1.45704 1.47682 1.06829 1.35824 1.17063 0.81201 0.82293 0.82396 1.90847 1.42169 1.58844 1.48572 1.20687 1.00759 0.92577 0.97533 1.21246 1.00580 0.94439 0.98047 1.21241 1.00038 0.94740 0.99436 1.15583 1.01949 0.90497 0.94909 1.24323 0.92580 0.94551 0.92508 1.81324 1.10681 1.05314 1.10134 1.41937 1.33890 1.09970 1.24791 0.73432 0.93441 0.92675 0.91736 0.89647 0.95118 0.93071 0.89364 0.77604 0.91912 0.91607 0.91785 0.91766 0.91046 0.90585 0.75811 0.82188 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.92 37.16 0.37 -1.15 16 2 C 0.05 0.68 5.19 -3.82 -0.02 0.66 16 3 N -0.51 -6.63 3.35 -228.09 -0.76 -7.40 16 4 C 0.04 0.65 4.03 -4.98 -0.02 0.63 16 5 C 0.44 9.69 7.29 -10.99 -0.08 9.61 16 6 O -0.58 -14.30 15.12 5.54 0.08 -14.21 16 7 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 8 C -0.30 -8.09 9.68 -14.94 -0.14 -8.24 16 9 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 10 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 11 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 12 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.06 0.60 2.37 -67.72 -0.16 0.44 16 17 H 0.09 0.79 6.34 -51.93 -0.33 0.46 16 18 C -0.19 -1.62 8.52 37.16 0.32 -1.31 16 19 C 0.13 1.39 4.94 -4.04 -0.02 1.37 16 20 N -0.71 -8.02 5.41 -61.50 -0.33 -8.35 16 21 C 0.58 7.50 7.80 -12.69 -0.10 7.40 16 22 O -0.53 -8.29 16.87 5.23 0.09 -8.20 16 23 C 0.00 0.03 7.04 -82.04 -0.58 -0.54 16 24 C -0.12 -1.17 10.60 -39.25 -0.42 -1.59 16 25 C -0.13 -1.10 10.80 -39.22 -0.42 -1.53 16 26 C 0.09 0.87 6.93 -83.82 -0.58 0.29 16 27 C 0.28 3.08 15.89 -22.48 -0.36 2.72 16 28 N -0.40 -5.28 18.54 41.84 0.78 -4.50 16 29 N -0.51 -4.93 6.02 -6.96 -0.04 -4.97 16 30 H 0.43 3.56 8.15 -40.82 -0.33 3.22 16 31 H 0.05 0.42 6.60 -51.93 -0.34 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.41 6.86 -51.93 -0.36 1.05 16 35 H 0.03 0.35 6.35 -51.93 -0.33 0.02 16 36 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 37 H 0.09 1.33 5.98 -51.93 -0.31 1.02 16 38 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 41 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.88 6.48 -51.93 -0.34 0.54 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.41 4.32 7.19 -40.82 -0.29 4.02 16 46 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -32.54 397.64 -6.94 -39.48 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -6.07 Total: 14.28 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.31 Total: 9.30 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.30 Total: -62.49 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.17 Total: -22.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.54 -6.94 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152775352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.836 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds