Wall clock time and date at job start Wed Apr 1 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47022 * 2 1 4 4 C 1.46899 * 110.99970 * 165.13355 * 3 2 1 5 5 C 1.50700 * 109.47044 * 284.49313 * 4 3 2 6 6 O 1.21297 * 119.99912 * 354.80786 * 5 4 3 7 7 N 1.34775 * 120.00445 * 174.81475 * 5 4 3 8 8 C 1.37092 * 120.00352 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00309 * 359.97438 * 8 7 5 10 10 C 1.38949 * 119.99842 * 179.97438 * 8 7 5 11 11 N 1.31409 * 120.00101 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99904 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46936 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47039 * 119.99986 * 12 10 8 15 15 H 1.48505 * 109.46685 * 239.99806 * 12 10 8 16 16 C 1.46895 * 111.00014 * 289.08576 * 3 2 1 17 17 H 1.09000 * 109.47435 * 48.58807 * 16 3 2 18 18 C 1.53001 * 109.47335 * 288.58649 * 16 3 2 19 19 C 1.52999 * 109.47229 * 168.58545 * 16 3 2 20 20 N 1.46500 * 109.46979 * 304.50480 * 19 16 3 21 21 C 1.34776 * 120.00280 * 184.00052 * 20 19 16 22 22 O 1.21656 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.47053 * 120.00281 * 179.97438 * 21 20 19 24 24 C 1.38009 * 125.92013 * 179.69113 * 23 21 20 25 25 C 1.39351 * 107.48396 * 179.84453 * 24 23 21 26 26 C 1.38081 * 107.51638 * 0.41630 * 25 24 23 27 27 C 1.43196 * 125.89257 * 179.72242 * 26 25 24 28 28 N 8.40166 * 59.94390 * 41.36771 * 2 1 3 29 29 N 1.36717 * 108.20777 * 359.74383 * 26 25 24 30 30 H 0.96999 * 125.68339 * 179.97438 * 29 26 25 31 31 H 1.08998 * 109.47773 * 61.83721 * 1 2 3 32 32 H 1.09003 * 109.47280 * 181.83831 * 1 2 3 33 33 H 1.09000 * 109.47127 * 301.83084 * 1 2 3 34 34 H 1.08995 * 109.47156 * 120.00155 * 2 1 3 35 35 H 1.08996 * 109.46853 * 240.00292 * 2 1 3 36 36 H 1.09004 * 109.46927 * 44.48789 * 4 3 2 37 37 H 1.08996 * 109.46971 * 164.48992 * 4 3 2 38 38 H 0.97005 * 119.99335 * 359.97438 * 7 5 4 39 39 H 0.97001 * 120.00045 * 180.02562 * 11 10 8 40 40 H 1.08998 * 109.46932 * 299.99653 * 18 16 3 41 41 H 1.08995 * 109.47455 * 60.00011 * 18 16 3 42 42 H 1.09001 * 109.46965 * 180.02562 * 18 16 3 43 43 H 1.09000 * 109.47192 * 64.50172 * 19 16 3 44 44 H 1.08999 * 109.47619 * 184.50926 * 19 16 3 45 45 H 0.97001 * 120.00140 * 3.99807 * 20 19 16 46 46 H 1.08000 * 126.25253 * 359.96165 * 24 23 21 47 47 H 1.08006 * 126.23762 * 180.13738 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4448 1.4395 0.3519 5 6 3.6049 1.2218 1.8344 6 8 2.6249 1.1332 2.5437 7 7 4.8369 1.1256 2.3724 8 6 4.9824 0.9280 3.7212 9 1 4.1099 0.8498 4.3528 10 6 6.2526 0.8283 4.2756 11 7 7.3143 0.9229 3.5070 12 14 6.4510 0.5584 6.1134 13 1 5.1116 0.4867 6.7505 14 1 7.1815 -0.7125 6.3510 15 1 7.2178 1.6871 6.6994 16 6 1.7723 2.0308 -1.2960 17 1 0.7378 1.8616 -1.5948 18 6 2.7108 1.4376 -2.3488 19 6 2.0283 3.5343 -1.1738 20 7 1.2069 4.0831 -0.0919 21 6 1.2064 5.4094 0.1474 22 8 1.8884 6.1509 -0.5346 23 6 0.3815 5.9603 1.2330 24 6 0.2934 7.2913 1.5874 25 6 -0.5953 7.3818 2.6569 26 6 -1.0295 6.1033 2.9459 27 6 -1.9498 5.7434 3.9822 28 7 -2.6780 5.4575 4.8059 29 7 -0.4286 5.2404 2.0721 30 1 -0.5543 4.2788 2.0499 31 1 -0.3634 0.4850 -0.9059 32 1 -0.3634 -1.0272 0.0330 33 1 -0.3633 0.5420 0.8731 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.9828 0.6614 -0.1898 37 1 3.8485 2.4154 0.0822 38 1 5.6206 1.1961 1.8051 39 1 8.2010 0.8529 3.8940 40 1 3.7453 1.6070 -2.0500 41 1 2.5285 0.3666 -2.4359 42 1 2.5275 1.9172 -3.3103 43 1 3.0818 3.7067 -0.9534 44 1 1.7683 4.0246 -2.1118 45 1 0.6634 3.4919 0.4521 46 1 0.8160 8.1126 1.1198 47 1 -0.8874 8.2865 3.1695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152775352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:13 Heat of formation + Delta-G solvation = -12.647726 kcal Electronic energy + Delta-G solvation = -30624.406714 eV Core-core repulsion = 26421.471144 eV Total energy + Delta-G solvation = -4202.935570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.45407 -40.84857 -40.03417 -38.83403 -37.62381 -35.95920 -35.54995 -33.26840 -32.95673 -32.18174 -31.39975 -30.86692 -27.94724 -27.56691 -26.00746 -24.71136 -23.56414 -22.17150 -21.66555 -21.35995 -20.74779 -20.19648 -19.62493 -18.46548 -18.12685 -17.21908 -16.95876 -16.53984 -16.29166 -16.19713 -15.83414 -15.63650 -15.55959 -15.44678 -15.05640 -14.95546 -14.56190 -14.32128 -14.25706 -14.11224 -13.87950 -13.76170 -13.67648 -13.54810 -13.44728 -13.29703 -13.05290 -12.93705 -12.86833 -12.40863 -12.39176 -12.31972 -12.13775 -11.88135 -11.50694 -11.40053 -11.28758 -10.27498 -10.17629 -10.12720 -9.97325 -9.36515 -9.17852 -8.45622 -5.93269 -0.08517 1.12158 1.13966 1.34839 1.40036 1.53023 1.97303 2.10382 2.11900 2.27724 2.32130 2.35380 2.74543 2.89815 3.21947 3.42070 3.75687 3.78325 4.01222 4.14653 4.17676 4.25342 4.26916 4.31929 4.43617 4.54459 4.57382 4.65260 4.68028 4.80685 4.84259 4.86386 4.88422 5.12342 5.15986 5.19972 5.27762 5.37146 5.41641 5.42600 5.48298 5.72627 5.91337 6.03554 6.10676 6.22123 6.28391 6.50770 6.62772 7.10016 7.15750 7.60848 8.16389 8.72162 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006965 B = 0.003592 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4019.099765 B = 7794.237938 C = 9738.530920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.054 3.946 3 N -0.518 5.518 4 C 0.057 3.943 5 C 0.445 3.555 6 O -0.608 6.608 7 N -0.580 5.580 8 C -0.326 4.326 9 H 0.078 0.922 10 C -0.013 4.013 11 N -0.922 5.922 12 Si 0.987 3.013 13 H -0.275 1.275 14 H -0.271 1.271 15 H -0.273 1.273 16 C 0.070 3.930 17 H 0.114 0.886 18 C -0.182 4.182 19 C 0.128 3.872 20 N -0.704 5.704 21 C 0.583 3.417 22 O -0.562 6.562 23 C -0.012 4.012 24 C -0.120 4.120 25 C -0.111 4.111 26 C 0.082 3.918 27 C 0.299 3.701 28 N -0.437 5.437 29 N -0.506 5.506 30 H 0.431 0.569 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.393 0.607 39 H 0.276 0.724 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.410 0.590 46 H 0.169 0.831 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 6.362 -13.447 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 N -0.242 5.242 4 C -0.074 4.074 5 C 0.232 3.768 6 O -0.494 6.494 7 N -0.218 5.218 8 C -0.456 4.456 9 H 0.096 0.904 10 C -0.212 4.212 11 N -0.563 5.563 12 Si 0.811 3.189 13 H -0.199 1.199 14 H -0.197 1.197 15 H -0.198 1.198 16 C -0.039 4.039 17 H 0.132 0.868 18 C -0.241 4.241 19 C 0.004 3.996 20 N -0.354 5.354 21 C 0.370 3.630 22 O -0.441 6.441 23 C -0.130 4.130 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.036 4.036 27 C -0.016 4.016 28 N -0.114 5.114 29 N -0.103 5.103 30 H 0.271 0.729 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.246 0.754 46 H 0.187 0.813 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.495 6.386 -11.835 19.773 hybrid contribution 1.426 -1.438 0.295 2.046 sum -13.069 4.948 -11.540 18.124 Atomic orbital electron populations 1.21689 0.93400 1.02008 1.02226 1.22049 0.97247 0.88052 0.99969 1.61699 1.14783 1.18428 1.29309 1.21704 0.91093 1.02919 0.91686 1.20821 0.82878 0.81942 0.91153 1.90472 1.39075 1.55990 1.63821 1.41970 1.07069 1.64543 1.08206 1.19622 0.93341 1.47984 0.84610 0.90433 1.25945 0.94333 0.96818 1.04129 1.69673 0.98640 1.50628 1.37392 0.84961 0.78125 0.78234 0.77579 1.19925 1.19668 1.19847 1.22126 1.02105 0.91864 0.87768 0.86815 1.22378 0.99783 1.02015 0.99960 1.21562 0.94790 0.92922 0.90344 1.45730 1.47347 1.06520 1.35829 1.17276 0.80928 0.82449 0.82392 1.90823 1.43740 1.59599 1.49944 1.20603 1.01415 0.93229 0.97802 1.21497 1.00596 0.94257 0.98221 1.21583 0.98591 0.95208 0.98492 1.15647 1.02086 0.91036 0.94824 1.24364 0.91888 0.93413 0.91960 1.81346 1.12069 1.06544 1.11452 1.41889 1.33642 1.10238 1.24534 0.72945 0.90853 0.91800 0.93290 0.93942 0.93159 0.91528 0.88331 0.77373 0.91477 0.92542 0.91371 0.89663 0.92734 0.89070 0.75417 0.81308 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.92 71.98 0.71 -1.91 16 2 C 0.05 1.33 5.19 86.30 0.45 1.78 16 3 N -0.52 -12.85 3.35 -875.55 -2.94 -15.79 16 4 C 0.06 1.77 4.03 85.56 0.35 2.12 16 5 C 0.44 19.83 7.29 87.66 0.64 20.46 16 6 O -0.61 -30.97 15.12 -3.08 -0.05 -31.02 16 7 N -0.58 -28.98 5.29 -306.99 -1.62 -30.61 16 8 C -0.33 -18.22 9.68 84.04 0.81 -17.40 16 9 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 10 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 11 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 12 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.07 1.19 2.37 44.92 0.11 1.29 16 17 H 0.11 1.52 6.34 -2.39 -0.02 1.51 16 18 C -0.18 -2.64 8.52 71.98 0.61 -2.02 16 19 C 0.13 2.52 4.94 86.38 0.43 2.94 16 20 N -0.70 -15.21 5.41 -466.72 -2.52 -17.74 16 21 C 0.58 14.61 7.80 86.56 0.68 15.28 16 22 O -0.56 -17.46 16.87 -4.21 -0.07 -17.53 16 23 C -0.01 -0.25 7.04 40.58 0.29 0.03 16 24 C -0.12 -2.22 10.60 22.48 0.24 -1.98 16 25 C -0.11 -1.71 10.80 22.50 0.24 -1.46 16 26 C 0.08 1.51 6.93 39.59 0.27 1.78 16 27 C 0.30 6.42 15.89 88.33 1.40 7.83 16 28 N -0.44 -11.45 18.54 19.00 0.35 -11.10 16 29 N -0.51 -9.38 6.02 -175.94 -1.06 -10.44 16 30 H 0.43 6.98 8.15 -92.71 -0.76 6.22 16 31 H 0.07 1.04 6.60 -2.39 -0.02 1.02 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 35 H 0.05 1.04 6.35 -2.39 -0.02 1.02 16 36 H 0.07 1.88 7.31 -2.39 -0.02 1.87 16 37 H 0.10 2.90 5.98 -2.39 -0.01 2.88 16 38 H 0.39 18.96 7.90 -92.70 -0.73 18.23 16 39 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.06 0.94 6.72 -2.39 -0.02 0.93 16 41 H 0.07 0.96 6.56 -2.39 -0.02 0.95 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.29 6.48 -2.39 -0.02 1.27 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.41 8.30 7.19 -92.71 -0.67 7.63 16 46 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -72.04 397.64 1.00 -71.04 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -1.09 Total: 38.96 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 7.69 Total: 28.53 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -7.51 Total: -135.11 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.12 Total: -48.55 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.04 1.00 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152775352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.389 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds