Wall clock time and date at job start Wed Apr 1 2020 04:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47188 * 2 1 4 4 C 1.46897 * 110.99806 * 290.69270 * 3 2 1 5 5 C 1.50701 * 109.47136 * 85.85368 * 4 3 2 6 6 O 1.21287 * 120.00179 * 7.56150 * 5 4 3 7 7 N 1.34780 * 119.99781 * 187.56394 * 5 4 3 8 8 C 1.37099 * 119.99750 * 179.97438 * 7 5 4 9 9 H 1.07993 * 120.00305 * 359.97438 * 8 7 5 10 10 C 1.38951 * 119.99603 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00566 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99721 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46998 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46772 * 120.00083 * 12 10 8 15 15 H 1.48498 * 109.46988 * 240.00324 * 12 10 8 16 16 C 1.46896 * 111.00122 * 166.73837 * 3 2 1 17 17 H 1.09001 * 109.47046 * 171.19786 * 16 3 2 18 18 C 1.53001 * 109.47428 * 51.19330 * 16 3 2 19 19 C 1.53006 * 109.47040 * 291.19222 * 16 3 2 20 20 N 1.46498 * 109.46940 * 304.99190 * 19 16 3 21 21 C 1.34785 * 119.99462 * 179.97438 * 20 19 16 22 22 O 1.21281 * 120.00276 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.99454 * 180.02562 * 21 20 19 24 24 C 1.52995 * 115.55325 * 34.41691 * 23 21 20 25 25 F 1.39908 * 109.47088 * 85.58326 * 24 23 21 26 26 F 1.39899 * 109.47390 * 205.58136 * 24 23 21 27 27 C 1.53007 * 117.49572 * 248.74742 * 23 21 20 28 28 C 1.53007 * 117.49489 * 180.08911 * 23 21 20 29 29 H 1.08998 * 109.47231 * 308.48242 * 1 2 3 30 30 H 1.08997 * 109.47594 * 68.48534 * 1 2 3 31 31 H 1.09006 * 109.46951 * 188.48527 * 1 2 3 32 32 H 1.09001 * 109.47754 * 119.99910 * 2 1 3 33 33 H 1.08999 * 109.47546 * 239.99832 * 2 1 3 34 34 H 1.09002 * 109.47356 * 205.85110 * 4 3 2 35 35 H 1.09003 * 109.47105 * 325.84901 * 4 3 2 36 36 H 0.97004 * 120.00403 * 359.97438 * 7 5 4 37 37 H 0.96993 * 120.00712 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.46946 * 300.00004 * 18 16 3 39 39 H 1.09000 * 109.46954 * 59.99633 * 18 16 3 40 40 H 1.08994 * 109.47116 * 180.02562 * 18 16 3 41 41 H 1.09005 * 109.46531 * 64.99371 * 19 16 3 42 42 H 1.08998 * 109.46983 * 184.99268 * 19 16 3 43 43 H 0.96994 * 120.00638 * 0.02562 * 20 19 16 44 44 H 1.08994 * 109.47295 * 325.58755 * 24 23 21 45 45 H 1.08996 * 117.49660 * 0.02562 * 27 23 21 46 46 H 1.08997 * 117.49534 * 145.02608 * 27 23 21 47 47 H 1.08998 * 117.49904 * 214.97983 * 28 23 21 48 48 H 1.08997 * 117.49878 * 359.97428 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7382 2.0429 -1.2829 5 6 0.3479 2.6236 -1.2554 6 8 -0.2892 2.6233 -0.2233 7 7 -0.1877 3.1434 -2.3777 8 6 -1.4527 3.6712 -2.3527 9 1 -2.0203 3.6702 -1.4339 10 6 -2.0046 4.2075 -3.5097 11 7 -1.3143 4.2083 -4.6279 12 14 -3.7286 4.9262 -3.4759 13 1 -4.2890 4.8041 -2.1061 14 1 -3.6752 6.3589 -3.8625 15 1 -4.5918 4.1872 -4.4319 16 6 3.4536 1.4364 0.3146 17 1 3.8243 2.4491 0.1558 18 6 4.2106 0.4675 -0.5959 19 6 3.6697 1.0375 1.7758 20 7 2.8511 1.8903 2.6411 21 6 2.8797 1.7192 3.9777 22 8 3.5835 0.8595 4.4641 23 6 2.0371 2.5961 4.8677 24 6 0.6854 3.0188 4.2890 25 9 -0.2653 2.0266 4.5520 26 9 0.2805 4.2207 4.8795 27 6 2.7653 3.5979 5.7661 28 6 2.1150 2.3536 6.3764 29 1 -0.3633 0.6395 0.8044 30 1 -0.3634 0.3769 -0.9560 31 1 -0.3633 -1.0165 0.1516 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.4620 2.8408 -1.4486 35 1 1.8112 1.3130 -2.0892 36 1 0.3219 3.1440 -3.2031 37 1 -1.6997 4.5824 -5.4356 38 1 3.8398 -0.5451 -0.4371 39 1 4.0565 0.7517 -1.6369 40 1 5.2745 0.5054 -0.3622 41 1 3.3811 -0.0045 1.9144 42 1 4.7214 1.1607 2.0343 43 1 2.2879 2.5776 2.2521 44 1 0.7783 3.1563 3.2118 45 1 3.8537 3.6229 5.7131 46 1 2.2811 4.5578 5.9452 47 1 1.2033 2.4956 6.9567 48 1 2.7753 1.5597 6.7251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153332175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:35 Heat of formation + Delta-G solvation = -139.374289 kcal Electronic energy + Delta-G solvation = -32484.057490 eV Core-core repulsion = 27824.937457 eV Total energy + Delta-G solvation = -4659.120032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.01625 -46.99095 -40.28498 -39.17754 -37.51611 -36.53765 -34.62290 -33.83675 -31.87692 -31.26958 -29.88094 -28.12091 -26.67916 -26.11551 -24.25986 -23.12141 -22.83064 -22.51734 -20.09883 -19.60161 -19.00666 -18.36307 -17.86423 -17.26870 -17.16995 -16.48100 -16.10937 -15.88472 -15.66785 -15.21190 -14.87987 -14.62585 -14.53647 -14.24170 -13.91657 -13.77033 -13.63383 -13.36054 -13.16739 -13.10495 -12.77419 -12.74213 -12.49445 -12.35354 -12.02260 -11.91400 -11.88133 -11.65892 -11.53536 -11.35397 -11.14236 -10.91941 -10.89017 -10.76974 -10.63333 -10.43364 -10.34961 -10.21924 -10.04832 -9.45597 -9.12708 -8.50377 -7.96325 -7.94168 -6.42293 -3.82731 2.25859 2.93583 3.15400 3.23594 3.26334 3.32988 3.61031 3.79866 3.92096 4.08325 4.13695 4.21761 4.41473 4.55903 4.60136 4.86858 4.98258 5.07305 5.08933 5.14820 5.21900 5.25648 5.27793 5.33599 5.39770 5.49172 5.55465 5.57477 5.63314 5.72373 5.78615 5.80880 5.81591 5.93340 6.02288 6.22492 6.26940 6.32987 6.53965 6.96150 7.15755 7.30262 7.42363 7.54815 8.06398 8.06807 8.62265 9.18852 9.55287 10.07280 10.75607 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.003360 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.908359 B = 8331.769265 C =10109.248976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 N -0.509 5.509 4 C 0.044 3.956 5 C 0.446 3.554 6 O -0.570 6.570 7 N -0.569 5.569 8 C -0.295 4.295 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.903 5.903 12 Si 0.926 3.074 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.064 3.936 17 H 0.090 0.910 18 C -0.183 4.183 19 C 0.133 3.867 20 N -0.707 5.707 21 C 0.558 3.442 22 O -0.539 6.539 23 C -0.235 4.235 24 C 0.304 3.696 25 F -0.193 7.193 26 F -0.198 7.198 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.390 0.610 37 H 0.270 0.730 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.412 0.588 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -3.945 12.512 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 N -0.233 5.233 4 C -0.087 4.087 5 C 0.231 3.769 6 O -0.453 6.453 7 N -0.206 5.206 8 C -0.425 4.425 9 H 0.121 0.879 10 C -0.180 4.180 11 N -0.545 5.545 12 Si 0.754 3.246 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.045 4.045 17 H 0.108 0.892 18 C -0.242 4.242 19 C 0.009 3.991 20 N -0.359 5.359 21 C 0.343 3.657 22 O -0.417 6.417 23 C -0.239 4.239 24 C 0.250 3.750 25 F -0.174 7.174 26 F -0.180 7.180 27 C -0.167 4.167 28 C -0.163 4.163 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.249 0.751 44 H 0.141 0.859 45 H 0.127 0.873 46 H 0.135 0.865 47 H 0.127 0.873 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.703 -4.235 13.733 18.533 hybrid contribution -0.537 0.252 -1.692 1.794 sum 11.165 -3.983 12.040 16.897 Atomic orbital electron populations 1.21844 0.93693 0.99951 1.04352 1.22149 0.97218 0.87967 0.99702 1.61758 1.12483 1.17092 1.31995 1.21953 0.98024 0.98641 0.90121 1.19699 0.87869 0.84354 0.84937 1.90497 1.62685 1.60801 1.31298 1.41890 1.15731 1.53095 1.09893 1.19713 0.91038 1.34392 0.97318 0.87895 1.25230 0.99930 0.97935 0.94884 1.69611 1.38053 1.46448 1.00399 0.85847 0.81878 0.78405 0.78514 1.19236 1.20825 1.20845 1.22091 0.88664 1.00267 0.93506 0.89194 1.22417 1.00929 1.00474 1.00395 1.21423 0.94720 0.94869 0.88138 1.45822 1.46624 1.38166 1.05260 1.18885 0.81591 0.82964 0.82263 1.90692 1.42129 1.33993 1.74876 1.22632 0.97686 1.07770 0.95856 1.21030 0.83014 0.72772 0.98201 1.93023 1.66642 1.62103 1.95679 1.92967 1.91610 1.46632 1.86756 1.23153 1.00484 0.94846 0.98174 1.23053 1.03651 1.00068 0.89501 0.90163 0.92441 0.94198 0.91428 0.95130 0.89862 0.92880 0.77712 0.92015 0.91824 0.91757 0.91889 0.91259 0.91039 0.75069 0.85937 0.87291 0.86506 0.87333 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.42 37.15 0.31 -2.04 16 2 C 0.06 0.78 4.36 -3.83 -0.02 0.77 16 3 N -0.51 -6.94 3.40 -228.08 -0.78 -7.72 16 4 C 0.04 0.68 4.70 -4.98 -0.02 0.66 16 5 C 0.45 9.46 6.11 -10.98 -0.07 9.40 16 6 O -0.57 -13.59 13.25 5.55 0.07 -13.52 16 7 N -0.57 -13.51 5.29 -10.96 -0.06 -13.56 16 8 C -0.30 -7.87 9.68 -14.93 -0.14 -8.01 16 9 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 10 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 11 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 12 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.06 0.67 2.41 -67.71 -0.16 0.51 16 17 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 18 C -0.18 -1.63 8.46 37.16 0.31 -1.32 16 19 C 0.13 1.43 4.95 -4.04 -0.02 1.41 16 20 N -0.71 -8.37 5.29 -60.29 -0.32 -8.69 16 21 C 0.56 7.25 7.39 -10.98 -0.08 7.17 16 22 O -0.54 -8.42 16.26 5.56 0.09 -8.33 16 23 C -0.24 -2.67 2.36 -155.66 -0.37 -3.04 16 24 C 0.30 3.83 5.27 37.15 0.20 4.02 16 25 F -0.19 -2.88 17.29 2.25 0.04 -2.84 16 26 F -0.20 -2.54 15.91 2.25 0.04 -2.50 16 27 C -0.13 -1.15 9.63 -26.68 -0.26 -1.41 16 28 C -0.13 -1.25 9.70 -26.68 -0.26 -1.51 16 29 H 0.08 1.54 6.98 -51.93 -0.36 1.18 16 30 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.87 6.24 -51.93 -0.32 0.54 16 33 H 0.03 0.39 6.74 -51.93 -0.35 0.04 16 34 H 0.08 1.15 7.52 -51.93 -0.39 0.76 16 35 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 36 H 0.39 9.00 7.90 -40.82 -0.32 8.68 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.06 0.58 6.61 -51.93 -0.34 0.24 16 39 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.81 6.62 -51.93 -0.34 0.47 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.41 4.95 6.44 -40.82 -0.26 4.68 16 44 H 0.12 1.52 6.39 -51.93 -0.33 1.19 16 45 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.12 0.94 7.22 -51.93 -0.37 0.56 16 47 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.12 1.19 7.67 -51.93 -0.40 0.80 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -30.63 391.21 -6.93 -37.57 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -6.94 Total: 14.26 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.67 Total: 7.08 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.43 Total: -53.27 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.16 Total: -21.85 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.63 -6.93 -37.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153332175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.807 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds