Wall clock time and date at job start Wed Apr 1 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47188 * 2 1 4 4 C 1.46897 * 110.99806 * 290.69270 * 3 2 1 5 5 C 1.50701 * 109.47136 * 85.85368 * 4 3 2 6 6 O 1.21287 * 120.00179 * 7.56150 * 5 4 3 7 7 N 1.34780 * 119.99781 * 187.56394 * 5 4 3 8 8 C 1.37099 * 119.99750 * 179.97438 * 7 5 4 9 9 H 1.07993 * 120.00305 * 359.97438 * 8 7 5 10 10 C 1.38951 * 119.99603 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00566 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99721 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46998 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46772 * 120.00083 * 12 10 8 15 15 H 1.48498 * 109.46988 * 240.00324 * 12 10 8 16 16 C 1.46896 * 111.00122 * 166.73837 * 3 2 1 17 17 H 1.09001 * 109.47046 * 171.19786 * 16 3 2 18 18 C 1.53001 * 109.47428 * 51.19330 * 16 3 2 19 19 C 1.53006 * 109.47040 * 291.19222 * 16 3 2 20 20 N 1.46498 * 109.46940 * 304.99190 * 19 16 3 21 21 C 1.34785 * 119.99462 * 179.97438 * 20 19 16 22 22 O 1.21281 * 120.00276 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.99454 * 180.02562 * 21 20 19 24 24 C 1.52995 * 115.55325 * 34.41691 * 23 21 20 25 25 F 1.39908 * 109.47088 * 85.58326 * 24 23 21 26 26 F 1.39899 * 109.47390 * 205.58136 * 24 23 21 27 27 C 1.53007 * 117.49572 * 248.74742 * 23 21 20 28 28 C 1.53007 * 117.49489 * 180.08911 * 23 21 20 29 29 H 1.08998 * 109.47231 * 308.48242 * 1 2 3 30 30 H 1.08997 * 109.47594 * 68.48534 * 1 2 3 31 31 H 1.09006 * 109.46951 * 188.48527 * 1 2 3 32 32 H 1.09001 * 109.47754 * 119.99910 * 2 1 3 33 33 H 1.08999 * 109.47546 * 239.99832 * 2 1 3 34 34 H 1.09002 * 109.47356 * 205.85110 * 4 3 2 35 35 H 1.09003 * 109.47105 * 325.84901 * 4 3 2 36 36 H 0.97004 * 120.00403 * 359.97438 * 7 5 4 37 37 H 0.96993 * 120.00712 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.46946 * 300.00004 * 18 16 3 39 39 H 1.09000 * 109.46954 * 59.99633 * 18 16 3 40 40 H 1.08994 * 109.47116 * 180.02562 * 18 16 3 41 41 H 1.09005 * 109.46531 * 64.99371 * 19 16 3 42 42 H 1.08998 * 109.46983 * 184.99268 * 19 16 3 43 43 H 0.96994 * 120.00638 * 0.02562 * 20 19 16 44 44 H 1.08994 * 109.47295 * 325.58755 * 24 23 21 45 45 H 1.08996 * 117.49660 * 0.02562 * 27 23 21 46 46 H 1.08997 * 117.49534 * 145.02608 * 27 23 21 47 47 H 1.08998 * 117.49904 * 214.97983 * 28 23 21 48 48 H 1.08997 * 117.49878 * 359.97428 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7382 2.0429 -1.2829 5 6 0.3479 2.6236 -1.2554 6 8 -0.2892 2.6233 -0.2233 7 7 -0.1877 3.1434 -2.3777 8 6 -1.4527 3.6712 -2.3527 9 1 -2.0203 3.6702 -1.4339 10 6 -2.0046 4.2075 -3.5097 11 7 -1.3143 4.2083 -4.6279 12 14 -3.7286 4.9262 -3.4759 13 1 -4.2890 4.8041 -2.1061 14 1 -3.6752 6.3589 -3.8625 15 1 -4.5918 4.1872 -4.4319 16 6 3.4536 1.4364 0.3146 17 1 3.8243 2.4491 0.1558 18 6 4.2106 0.4675 -0.5959 19 6 3.6697 1.0375 1.7758 20 7 2.8511 1.8903 2.6411 21 6 2.8797 1.7192 3.9777 22 8 3.5835 0.8595 4.4641 23 6 2.0371 2.5961 4.8677 24 6 0.6854 3.0188 4.2890 25 9 -0.2653 2.0266 4.5520 26 9 0.2805 4.2207 4.8795 27 6 2.7653 3.5979 5.7661 28 6 2.1150 2.3536 6.3764 29 1 -0.3633 0.6395 0.8044 30 1 -0.3634 0.3769 -0.9560 31 1 -0.3633 -1.0165 0.1516 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.4620 2.8408 -1.4486 35 1 1.8112 1.3130 -2.0892 36 1 0.3219 3.1440 -3.2031 37 1 -1.6997 4.5824 -5.4356 38 1 3.8398 -0.5451 -0.4371 39 1 4.0565 0.7517 -1.6369 40 1 5.2745 0.5054 -0.3622 41 1 3.3811 -0.0045 1.9144 42 1 4.7214 1.1607 2.0343 43 1 2.2879 2.5776 2.2521 44 1 0.7783 3.1563 3.2118 45 1 3.8537 3.6229 5.7131 46 1 2.2811 4.5578 5.9452 47 1 1.2033 2.4956 6.9567 48 1 2.7753 1.5597 6.7251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153332175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:33 Heat of formation + Delta-G solvation = -160.260115 kcal Electronic energy + Delta-G solvation = -32484.963167 eV Core-core repulsion = 27824.937457 eV Total energy + Delta-G solvation = -4660.025710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.08241 -48.07651 -41.28291 -40.49255 -38.93055 -37.46935 -35.93467 -35.47611 -33.17674 -32.90720 -31.16829 -29.02841 -28.00411 -27.16984 -25.95984 -24.10641 -23.64027 -23.55061 -21.33062 -20.73837 -20.36294 -19.74389 -19.33740 -18.28545 -18.22326 -17.77940 -17.20961 -17.08225 -16.76266 -16.50488 -16.37504 -15.89254 -15.66922 -15.51773 -15.28242 -14.95960 -14.71128 -14.56299 -14.42403 -14.19988 -13.80328 -13.75597 -13.68609 -13.54625 -13.46742 -13.17926 -12.99191 -12.84951 -12.77371 -12.50820 -12.44966 -12.33593 -12.11931 -12.05221 -11.83731 -11.76037 -11.64924 -11.51007 -11.31118 -11.06700 -10.13981 -10.09749 -9.87362 -9.17101 -8.39952 -5.86150 1.30070 1.38032 1.43213 1.56009 2.01824 2.20231 2.31238 2.33907 2.67476 2.74528 3.15326 3.20005 3.28344 3.53649 3.59337 3.68215 3.72317 4.00471 4.03597 4.12639 4.12872 4.29404 4.35957 4.49389 4.50652 4.53979 4.60455 4.64222 4.64648 4.67991 4.74408 4.82337 4.85027 4.94203 5.04650 5.07091 5.17539 5.28547 5.39476 5.47728 5.57179 5.94950 6.16637 6.21989 6.43611 6.71276 7.07808 7.23862 7.70276 8.27148 8.77917 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.003360 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.908359 B = 8331.769265 C =10109.248976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 N -0.523 5.523 4 C 0.058 3.942 5 C 0.449 3.551 6 O -0.598 6.598 7 N -0.584 5.584 8 C -0.319 4.319 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.925 5.925 12 Si 0.984 3.016 13 H -0.275 1.275 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.070 3.930 17 H 0.102 0.898 18 C -0.178 4.178 19 C 0.133 3.867 20 N -0.704 5.704 21 C 0.558 3.442 22 O -0.568 6.568 23 C -0.249 4.249 24 C 0.304 3.696 25 F -0.210 7.210 26 F -0.199 7.199 27 C -0.107 4.107 28 C -0.126 4.126 29 H 0.048 0.952 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.392 0.608 37 H 0.274 0.726 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.411 0.589 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.115 0.885 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 -3.873 12.612 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 N -0.247 5.247 4 C -0.074 4.074 5 C 0.236 3.764 6 O -0.482 6.482 7 N -0.223 5.223 8 C -0.449 4.449 9 H 0.096 0.904 10 C -0.214 4.214 11 N -0.567 5.567 12 Si 0.809 3.191 13 H -0.199 1.199 14 H -0.199 1.199 15 H -0.201 1.201 16 C -0.038 4.038 17 H 0.120 0.880 18 C -0.237 4.237 19 C 0.009 3.991 20 N -0.354 5.354 21 C 0.344 3.656 22 O -0.448 6.448 23 C -0.253 4.253 24 C 0.250 3.750 25 F -0.191 7.191 26 F -0.180 7.180 27 C -0.144 4.144 28 C -0.163 4.163 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.248 0.752 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.147 0.853 47 H 0.133 0.867 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.407 -4.165 13.822 19.702 hybrid contribution -1.041 0.190 -1.636 1.948 sum 12.367 -3.975 12.187 17.812 Atomic orbital electron populations 1.21723 0.96247 0.99936 1.01164 1.22076 0.94815 0.88433 1.01063 1.61607 1.15076 1.17001 1.31027 1.21772 0.94351 0.99654 0.91577 1.20766 0.89669 0.82371 0.83594 1.90488 1.64182 1.61260 1.32286 1.41959 1.15198 1.54280 1.10822 1.19613 0.92577 1.35884 0.96783 0.90393 1.25892 1.03054 0.98059 0.94423 1.69669 1.39255 1.47040 1.00714 0.84993 0.77993 0.78068 0.78063 1.19920 1.19895 1.20110 1.22128 0.86577 1.01582 0.93498 0.88035 1.22372 1.01842 0.99694 0.99799 1.21510 0.95257 0.94210 0.88093 1.45882 1.46380 1.38011 1.05174 1.19083 0.81304 0.82659 0.82601 1.90674 1.43577 1.35218 1.75366 1.22534 0.97063 1.09366 0.96323 1.21085 0.83279 0.72362 0.98285 1.92988 1.67502 1.62855 1.95765 1.92958 1.91699 1.46601 1.86761 1.23284 1.01053 0.94654 0.95432 1.23122 1.04100 1.00721 0.88333 0.93251 0.95592 0.92604 0.90203 0.93429 0.87368 0.91428 0.77444 0.91689 0.91920 0.91674 0.89957 0.92051 0.89635 0.75171 0.86193 0.86115 0.85327 0.86662 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.42 71.98 0.61 -3.87 16 2 C 0.06 1.65 4.36 86.30 0.38 2.02 16 3 N -0.52 -13.38 3.40 -875.52 -2.98 -16.36 16 4 C 0.06 1.69 4.70 85.56 0.40 2.10 16 5 C 0.45 19.16 6.11 87.66 0.54 19.70 16 6 O -0.60 -29.29 13.25 -3.05 -0.04 -29.33 16 7 N -0.58 -28.18 5.29 -306.99 -1.62 -29.81 16 8 C -0.32 -17.43 9.68 84.04 0.81 -16.62 16 9 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 10 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 11 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 12 Si 0.98 42.75 29.55 68.60 2.03 44.77 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.07 1.28 2.41 44.92 0.11 1.39 16 17 H 0.10 1.67 7.71 -2.39 -0.02 1.65 16 18 C -0.18 -2.55 8.46 71.98 0.61 -1.94 16 19 C 0.13 2.59 4.95 86.38 0.43 3.01 16 20 N -0.70 -15.84 5.29 -463.04 -2.45 -18.28 16 21 C 0.56 14.00 7.39 87.66 0.65 14.65 16 22 O -0.57 -17.25 16.26 -3.03 -0.05 -17.30 16 23 C -0.25 -5.44 2.36 -52.93 -0.13 -5.56 16 24 C 0.30 7.63 5.27 71.98 0.38 8.01 16 25 F -0.21 -6.37 17.29 44.97 0.78 -5.59 16 26 F -0.20 -4.98 15.91 44.97 0.72 -4.27 16 27 C -0.11 -1.71 9.63 30.62 0.29 -1.42 16 28 C -0.13 -2.36 9.70 30.62 0.30 -2.06 16 29 H 0.05 1.95 6.98 -2.39 -0.02 1.93 16 30 H 0.02 1.00 6.33 -2.39 -0.02 0.99 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 32 H 0.08 1.91 6.24 -2.39 -0.01 1.89 16 33 H 0.05 1.10 6.74 -2.39 -0.02 1.08 16 34 H 0.11 2.69 7.52 -2.39 -0.02 2.67 16 35 H 0.07 1.84 7.57 -2.39 -0.02 1.82 16 36 H 0.39 18.26 7.90 -92.71 -0.73 17.52 16 37 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.06 0.93 6.61 -2.38 -0.02 0.92 16 39 H 0.06 0.96 7.56 -2.39 -0.02 0.94 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.32 6.62 -2.38 -0.02 1.30 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.41 9.53 6.44 -92.71 -0.60 8.93 16 44 H 0.12 3.03 6.39 -2.39 -0.02 3.02 16 45 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.13 1.77 7.22 -2.39 -0.02 1.76 16 47 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.11 2.23 7.67 -2.39 -0.02 2.21 16 Total: -1.00 -67.49 391.21 2.19 -65.31 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.31 Total: 40.75 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.84 Total: 19.06 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -6.77 Total: -113.40 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.09 Total: -46.63 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 1.49 Total: -9.86 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.49 2.19 -65.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153332175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.954 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds