Wall clock time and date at job start Wed Apr 1 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47384 * 2 1 4 4 C 1.36934 * 120.00248 * 275.91834 * 3 2 1 5 5 H 1.08004 * 120.00090 * 34.05699 * 4 3 2 6 6 C 1.38807 * 120.00222 * 214.06397 * 4 3 2 7 7 N 1.31625 * 119.99870 * 17.05777 * 6 4 3 8 8 Si 1.86798 * 120.00309 * 197.06105 * 6 4 3 9 9 H 1.48501 * 109.46912 * 89.99467 * 8 6 4 10 10 H 1.48491 * 109.47304 * 209.99733 * 8 6 4 11 11 H 1.48506 * 109.46893 * 330.00163 * 8 6 4 12 12 C 1.46508 * 119.99842 * 95.91371 * 3 2 1 13 13 H 1.08995 * 109.46564 * 177.14857 * 12 3 2 14 14 C 1.53002 * 109.47060 * 57.14673 * 12 3 2 15 15 C 1.52994 * 109.46990 * 297.14535 * 12 3 2 16 16 N 1.46496 * 109.47712 * 305.00270 * 15 12 3 17 17 C 1.34777 * 120.00336 * 180.02562 * 16 15 12 18 18 O 1.21495 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.48342 * 119.99850 * 179.97438 * 17 16 15 20 20 C 1.41892 * 126.84078 * 179.70890 * 19 17 16 21 21 C 1.36727 * 103.81943 * 179.89408 * 20 19 17 22 22 C 1.47854 * 126.82336 * 180.13963 * 21 20 19 23 23 C 1.41042 * 126.07154 * 180.30133 * 22 21 20 24 24 C 1.35008 * 107.84570 * 179.97438 * 23 22 21 25 25 N 1.35088 * 108.03623 * 0.02562 * 24 23 22 26 26 C 1.46493 * 125.91571 * 180.02562 * 25 24 23 27 27 N 1.31824 * 126.06190 * 359.97438 * 22 21 20 28 28 O 1.34464 * 106.36225 * 0.36641 * 21 20 19 29 29 N 1.20869 * 111.73396 * 359.74905 * 28 21 20 30 30 H 1.08998 * 109.46691 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47206 * 299.99954 * 1 2 3 33 33 H 1.08998 * 109.47176 * 120.00028 * 2 1 3 34 34 H 1.08998 * 109.47206 * 240.00046 * 2 1 3 35 35 H 0.97003 * 120.00065 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.46785 * 299.99989 * 14 12 3 37 37 H 1.08997 * 109.47124 * 59.99646 * 14 12 3 38 38 H 1.08998 * 109.47097 * 179.97438 * 14 12 3 39 39 H 1.09005 * 109.47555 * 65.00327 * 15 12 3 40 40 H 1.09000 * 109.46924 * 184.99995 * 15 12 3 41 41 H 0.96998 * 119.99731 * 359.97438 * 16 15 12 42 42 H 1.08003 * 128.09301 * 0.02562 * 20 19 17 43 43 H 1.07997 * 126.07212 * 359.95408 * 23 22 21 44 44 H 1.07996 * 125.98196 * 179.97438 * 24 23 22 45 45 H 1.09002 * 109.47270 * 89.98939 * 26 25 24 46 46 H 1.08996 * 109.47271 * 209.99930 * 26 25 24 47 47 H 1.09001 * 109.46892 * 329.99418 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1314 2.0675 -1.1795 5 1 1.4234 1.8925 -1.9761 6 6 3.1560 2.9881 -1.3515 7 7 4.1990 2.9695 -0.5488 8 14 3.0547 4.2532 -2.7221 9 1 2.3767 5.4749 -2.2189 10 1 4.4246 4.5996 -3.1783 11 1 2.2818 3.6908 -3.8587 12 6 2.3859 2.0282 1.2621 13 1 2.7714 3.0273 1.0593 14 6 3.4622 1.1992 1.9657 15 6 1.1520 2.1304 2.1609 16 7 0.0792 2.8211 1.4411 17 6 -1.1103 3.0274 2.0403 18 8 -1.2931 2.6401 3.1772 19 6 -2.1964 3.7272 1.3115 20 6 -3.4985 4.0149 1.7965 21 6 -4.0992 4.6643 0.7540 22 6 -5.4782 5.1966 0.7179 23 6 -6.0843 5.8594 -0.3696 24 6 -7.3428 6.1858 -0.0058 25 7 -7.5381 5.7532 1.2590 26 6 -8.7697 5.9029 2.0379 27 7 -6.3613 5.1305 1.6944 28 8 -3.1886 4.7183 -0.2339 29 7 -2.1465 4.1981 0.0890 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.9148 3.6131 -0.6688 36 1 3.0766 0.2001 2.1684 37 1 4.3412 1.1264 1.3253 38 1 3.7359 1.6808 2.9044 39 1 0.8190 1.1297 2.4362 40 1 1.4041 2.6901 3.0617 41 1 0.2252 3.1306 0.5335 42 1 -3.9165 3.7784 2.7638 43 1 -5.6234 6.0689 -1.3235 44 1 -8.0664 6.7030 -0.6183 45 1 -9.4127 5.0388 1.8706 46 1 -8.5234 5.9729 3.0973 47 1 -9.2895 6.8085 1.7252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153588489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:32 Heat of formation + Delta-G solvation = 134.424361 kcal Electronic energy + Delta-G solvation = -30511.846256 eV Core-core repulsion = 26315.288210 eV Total energy + Delta-G solvation = -4196.558046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.00787 -41.47940 -39.21567 -36.90858 -34.48663 -33.92381 -33.61394 -31.87834 -31.69311 -30.94035 -30.47033 -28.16980 -27.12452 -26.25835 -23.94637 -23.78371 -23.38945 -21.86630 -21.52337 -21.17729 -19.53608 -19.13675 -18.13303 -17.78676 -16.97266 -16.76833 -16.45942 -15.86741 -15.55405 -14.90726 -14.80507 -14.66485 -14.15626 -14.04803 -14.00172 -13.64968 -13.29899 -13.17691 -13.01336 -12.83532 -12.66592 -12.36822 -12.15606 -11.82702 -11.65203 -11.52435 -11.13759 -11.03876 -10.93118 -10.78021 -10.69459 -10.68564 -10.37942 -10.24647 -10.05387 -9.82275 -9.63298 -9.42994 -9.30359 -8.77149 -8.51838 -8.44179 -6.63661 -5.85001 -3.34867 0.72717 1.45956 1.71111 1.81774 2.75517 2.84926 3.37018 3.38255 3.44755 3.46542 3.49532 4.07674 4.16210 4.30375 4.46486 4.56630 4.67677 4.88718 4.93332 4.96533 5.24813 5.29166 5.37083 5.40297 5.43110 5.62152 5.84694 5.90584 6.05161 6.07802 6.17633 6.25901 6.38215 6.47781 6.51697 6.54391 6.60152 6.68737 6.83624 6.94263 6.96704 7.14002 7.18871 7.46926 7.56234 7.81121 7.90135 8.15868 8.46872 8.56991 9.18966 9.79985 10.37094 11.21241 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.002662 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.141334 B =10516.421071 C =11656.894477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.173 3.827 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.099 3.901 16 N -0.680 5.680 17 C 0.587 3.413 18 O -0.541 6.541 19 C -0.020 4.020 20 C -0.140 4.140 21 C 0.026 3.974 22 C 0.144 3.856 23 C -0.244 4.244 24 C 0.057 3.943 25 N -0.368 5.368 26 C 0.100 3.900 27 N -0.261 5.261 28 O 0.140 5.860 29 N -0.311 5.311 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.419 0.581 42 H 0.184 0.816 43 H 0.160 0.840 44 H 0.182 0.818 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 6.309 3.255 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.065 3.935 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.026 4.026 16 N -0.330 5.330 17 C 0.370 3.630 18 O -0.419 6.419 19 C -0.178 4.178 20 C -0.164 4.164 21 C -0.038 4.038 22 C -0.020 4.020 23 C -0.273 4.273 24 C -0.088 4.088 25 N -0.151 5.151 26 C -0.041 4.041 27 N -0.088 5.088 28 O 0.061 5.939 29 N -0.008 5.008 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.257 0.743 42 H 0.202 0.798 43 H 0.177 0.823 44 H 0.199 0.801 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.146 5.719 4.391 23.290 hybrid contribution -0.364 1.027 -1.324 1.715 sum -22.510 6.746 3.067 23.699 Atomic orbital electron populations 1.22425 1.00099 0.98943 1.01408 1.20775 0.91579 0.87451 0.98824 1.43874 1.75870 1.08295 1.02280 1.19095 1.07692 1.18643 0.93628 0.91842 1.25165 0.94474 1.01302 0.97908 1.70005 1.07266 1.36275 1.39858 0.86386 0.76806 0.82044 0.82142 1.21222 1.21833 1.20291 1.20552 0.88918 0.99681 0.84350 0.87894 1.21988 1.00985 0.98103 0.99144 1.22334 0.88935 0.95762 0.95538 1.45894 1.11440 1.56357 1.19356 1.16879 0.81401 0.79444 0.85285 1.90752 1.81454 1.52258 1.17389 1.23565 0.97383 1.04786 0.92102 1.22622 0.92026 1.00439 1.01301 1.20783 0.90392 1.03618 0.89052 1.18806 0.89545 0.99977 0.93697 1.21596 0.94880 1.09312 1.01548 1.22535 0.98512 1.00843 0.86903 1.48543 1.11223 1.43939 1.11436 1.21952 0.81682 1.03137 0.97314 1.77693 0.91904 1.18215 1.20953 1.84917 1.15687 1.56726 1.36571 1.74299 1.02267 1.09353 1.14911 0.93424 0.94781 0.93360 0.94370 0.94014 0.93570 0.94910 0.90516 0.94625 0.92368 0.92501 0.74320 0.79832 0.82257 0.80106 0.90339 0.88942 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.95 37.16 0.37 -2.86 16 2 C 0.14 2.91 5.75 -4.04 -0.02 2.89 16 3 N -0.58 -13.45 1.88 -165.66 -0.31 -13.76 16 4 C -0.26 -6.69 9.07 -15.06 -0.14 -6.82 16 5 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 6 C 0.01 0.30 4.86 -17.43 -0.08 0.22 16 7 N -0.89 -24.12 10.91 55.49 0.61 -23.51 16 8 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.17 3.78 1.95 -67.93 -0.13 3.65 16 13 H 0.10 2.57 5.94 -51.93 -0.31 2.27 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.59 16 15 C 0.10 1.98 4.36 -4.05 -0.02 1.96 16 16 N -0.68 -13.59 4.28 -61.09 -0.26 -13.85 16 17 C 0.59 11.49 7.80 -12.10 -0.09 11.40 16 18 O -0.54 -11.51 16.95 5.37 0.09 -11.42 16 19 C -0.02 -0.35 7.18 -82.63 -0.59 -0.94 16 20 C -0.14 -2.10 10.94 -38.73 -0.42 -2.52 16 21 C 0.03 0.36 7.35 -36.19 -0.27 0.10 16 22 C 0.14 1.74 7.11 -82.87 -0.59 1.15 16 23 C -0.24 -2.26 10.77 -39.67 -0.43 -2.69 16 24 C 0.06 0.39 11.46 -17.27 -0.20 0.19 16 25 N -0.37 -2.98 4.01 -68.21 -0.27 -3.25 16 26 C 0.10 0.35 11.46 59.84 0.69 1.04 16 27 N -0.26 -3.10 12.60 33.36 0.42 -2.68 16 28 O 0.14 2.09 11.20 16.05 0.18 2.27 16 29 N -0.31 -5.39 11.82 33.35 0.39 -5.00 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.95 5.32 -51.93 -0.28 0.67 16 33 H 0.04 0.75 6.29 -51.93 -0.33 0.43 16 34 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.03 0.62 6.56 -51.93 -0.34 0.28 16 37 H 0.08 1.77 7.69 -51.93 -0.40 1.37 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.16 6.98 -51.93 -0.36 0.80 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.42 8.89 7.49 -40.82 -0.31 8.58 16 42 H 0.18 2.53 8.06 -52.48 -0.42 2.11 16 43 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -31.36 395.33 -6.34 -37.70 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.52 Total: 7.32 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.59 Total: 4.16 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.57 Total: -62.05 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.27 Total: -9.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.36 -6.34 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153588489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.127 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds