Wall clock time and date at job start Wed Apr 1 2020 04:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47384 * 2 1 4 4 C 1.36934 * 120.00248 * 275.91834 * 3 2 1 5 5 H 1.08004 * 120.00090 * 34.05699 * 4 3 2 6 6 C 1.38807 * 120.00222 * 214.06397 * 4 3 2 7 7 N 1.31625 * 119.99870 * 17.05777 * 6 4 3 8 8 Si 1.86798 * 120.00309 * 197.06105 * 6 4 3 9 9 H 1.48501 * 109.46912 * 89.99467 * 8 6 4 10 10 H 1.48491 * 109.47304 * 209.99733 * 8 6 4 11 11 H 1.48506 * 109.46893 * 330.00163 * 8 6 4 12 12 C 1.46508 * 119.99842 * 95.91371 * 3 2 1 13 13 H 1.08995 * 109.46564 * 177.14857 * 12 3 2 14 14 C 1.53002 * 109.47060 * 57.14673 * 12 3 2 15 15 C 1.52994 * 109.46990 * 297.14535 * 12 3 2 16 16 N 1.46496 * 109.47712 * 305.00270 * 15 12 3 17 17 C 1.34777 * 120.00336 * 180.02562 * 16 15 12 18 18 O 1.21495 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.48342 * 119.99850 * 179.97438 * 17 16 15 20 20 C 1.41892 * 126.84078 * 179.70890 * 19 17 16 21 21 C 1.36727 * 103.81943 * 179.89408 * 20 19 17 22 22 C 1.47854 * 126.82336 * 180.13963 * 21 20 19 23 23 C 1.41042 * 126.07154 * 180.30133 * 22 21 20 24 24 C 1.35008 * 107.84570 * 179.97438 * 23 22 21 25 25 N 1.35088 * 108.03623 * 0.02562 * 24 23 22 26 26 C 1.46493 * 125.91571 * 180.02562 * 25 24 23 27 27 N 1.31824 * 126.06190 * 359.97438 * 22 21 20 28 28 O 1.34464 * 106.36225 * 0.36641 * 21 20 19 29 29 N 1.20869 * 111.73396 * 359.74905 * 28 21 20 30 30 H 1.08998 * 109.46691 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47206 * 299.99954 * 1 2 3 33 33 H 1.08998 * 109.47176 * 120.00028 * 2 1 3 34 34 H 1.08998 * 109.47206 * 240.00046 * 2 1 3 35 35 H 0.97003 * 120.00065 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.46785 * 299.99989 * 14 12 3 37 37 H 1.08997 * 109.47124 * 59.99646 * 14 12 3 38 38 H 1.08998 * 109.47097 * 179.97438 * 14 12 3 39 39 H 1.09005 * 109.47555 * 65.00327 * 15 12 3 40 40 H 1.09000 * 109.46924 * 184.99995 * 15 12 3 41 41 H 0.96998 * 119.99731 * 359.97438 * 16 15 12 42 42 H 1.08003 * 128.09301 * 0.02562 * 20 19 17 43 43 H 1.07997 * 126.07212 * 359.95408 * 23 22 21 44 44 H 1.07996 * 125.98196 * 179.97438 * 24 23 22 45 45 H 1.09002 * 109.47270 * 89.98939 * 26 25 24 46 46 H 1.08996 * 109.47271 * 209.99930 * 26 25 24 47 47 H 1.09001 * 109.46892 * 329.99418 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1314 2.0675 -1.1795 5 1 1.4234 1.8925 -1.9761 6 6 3.1560 2.9881 -1.3515 7 7 4.1990 2.9695 -0.5488 8 14 3.0547 4.2532 -2.7221 9 1 2.3767 5.4749 -2.2189 10 1 4.4246 4.5996 -3.1783 11 1 2.2818 3.6908 -3.8587 12 6 2.3859 2.0282 1.2621 13 1 2.7714 3.0273 1.0593 14 6 3.4622 1.1992 1.9657 15 6 1.1520 2.1304 2.1609 16 7 0.0792 2.8211 1.4411 17 6 -1.1103 3.0274 2.0403 18 8 -1.2931 2.6401 3.1772 19 6 -2.1964 3.7272 1.3115 20 6 -3.4985 4.0149 1.7965 21 6 -4.0992 4.6643 0.7540 22 6 -5.4782 5.1966 0.7179 23 6 -6.0843 5.8594 -0.3696 24 6 -7.3428 6.1858 -0.0058 25 7 -7.5381 5.7532 1.2590 26 6 -8.7697 5.9029 2.0379 27 7 -6.3613 5.1305 1.6944 28 8 -3.1886 4.7183 -0.2339 29 7 -2.1465 4.1981 0.0890 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.9148 3.6131 -0.6688 36 1 3.0766 0.2001 2.1684 37 1 4.3412 1.1264 1.3253 38 1 3.7359 1.6808 2.9044 39 1 0.8190 1.1297 2.4362 40 1 1.4041 2.6901 3.0617 41 1 0.2252 3.1306 0.5335 42 1 -3.9165 3.7784 2.7638 43 1 -5.6234 6.0689 -1.3235 44 1 -8.0664 6.7030 -0.6183 45 1 -9.4127 5.0388 1.8706 46 1 -8.5234 5.9729 3.0973 47 1 -9.2895 6.8085 1.7252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153588489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:29 Heat of formation + Delta-G solvation = 115.187943 kcal Electronic energy + Delta-G solvation = -30512.680409 eV Core-core repulsion = 26315.288210 eV Total energy + Delta-G solvation = -4197.392199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -46.26804 -42.13888 -40.81027 -38.65551 -35.47114 -35.40739 -34.86040 -33.76158 -32.83244 -32.42129 -31.16905 -29.98551 -27.81782 -27.70401 -25.82394 -25.20555 -24.43524 -23.38635 -22.74355 -21.84004 -21.13564 -20.67671 -19.12804 -19.05073 -18.69715 -17.95229 -17.57251 -17.10781 -16.63388 -16.49963 -16.40198 -15.85342 -15.74347 -15.40004 -15.00675 -14.76723 -14.65356 -14.34975 -14.05560 -13.87056 -13.76897 -13.72453 -13.54393 -13.26814 -13.23830 -12.88318 -12.82588 -12.75468 -12.58886 -12.44119 -12.06031 -11.90018 -11.86922 -11.69517 -11.54195 -11.43774 -11.40129 -11.19830 -10.45554 -10.11158 -10.07990 -9.52998 -8.54343 -7.84240 -5.35254 -0.33383 0.18604 1.03402 1.10445 1.47194 1.51538 1.57118 1.86463 1.88426 2.02101 2.05570 2.52618 2.79280 3.28227 3.29665 3.59525 3.63290 3.71588 4.00063 4.10739 4.17113 4.21996 4.41644 4.48819 4.52340 4.61892 4.62259 4.67017 4.75186 4.77454 4.79447 4.83090 4.89412 4.91778 4.93991 5.03372 5.19708 5.28745 5.33354 5.35848 5.53999 5.68177 5.73533 5.82973 6.04821 6.36203 6.44604 6.50050 6.83035 6.98396 7.22709 7.90411 8.42186 9.19019 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.002662 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.141334 B =10516.421071 C =11656.894477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.055 0.945 6 C -0.030 4.030 7 N -0.912 5.912 8 Si 0.948 3.052 9 H -0.288 1.288 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.177 3.823 13 H 0.072 0.928 14 C -0.133 4.133 15 C 0.110 3.890 16 N -0.682 5.682 17 C 0.590 3.410 18 O -0.561 6.561 19 C -0.037 4.037 20 C -0.150 4.150 21 C 0.047 3.953 22 C 0.113 3.887 23 C -0.263 4.263 24 C 0.078 3.922 25 N -0.362 5.362 26 C 0.089 3.911 27 N -0.296 5.296 28 O 0.151 5.849 29 N -0.333 5.333 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.033 0.967 35 H 0.249 0.751 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.192 0.808 43 H 0.171 0.829 44 H 0.231 0.769 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.966 7.033 2.995 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.073 0.927 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.215 1.215 10 H -0.223 1.223 11 H -0.199 1.199 12 C 0.069 3.931 13 H 0.090 0.910 14 C -0.192 4.192 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.374 3.626 18 O -0.439 6.439 19 C -0.194 4.194 20 C -0.174 4.174 21 C -0.018 4.018 22 C -0.049 4.049 23 C -0.292 4.292 24 C -0.068 4.068 25 N -0.146 5.146 26 C -0.051 4.051 27 N -0.125 5.125 28 O 0.071 5.929 29 N -0.029 5.029 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.209 0.791 43 H 0.188 0.812 44 H 0.248 0.752 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.229 6.417 4.146 26.360 hybrid contribution 0.369 0.843 -1.241 1.545 sum -24.860 7.260 2.905 26.061 Atomic orbital electron populations 1.22246 0.98605 1.00258 1.00296 1.20851 0.92558 0.86215 0.99030 1.43987 1.76042 1.09236 1.02014 1.19168 1.06966 1.18684 0.94187 0.92731 1.25676 0.94493 1.02806 0.99753 1.70118 1.07656 1.36713 1.41097 0.85571 0.76219 0.80140 0.80311 1.21522 1.22347 1.19885 1.20429 0.89986 0.98232 0.84409 0.91044 1.21842 0.99260 0.98940 0.99153 1.22152 0.88104 0.96103 0.95131 1.45887 1.11771 1.56513 1.18988 1.17042 0.81477 0.78983 0.85061 1.90726 1.81852 1.53178 1.18190 1.23371 0.97728 1.05790 0.92551 1.22676 0.91224 1.01390 1.02123 1.21085 0.90931 1.01871 0.87879 1.18827 0.88838 1.01924 0.95348 1.21896 0.96035 1.09774 1.01523 1.23261 0.98287 0.98905 0.86329 1.48990 1.11069 1.42244 1.12278 1.22382 0.80189 1.05541 0.96938 1.77604 0.93388 1.19641 1.21836 1.84875 1.15415 1.55972 1.36673 1.74279 1.03382 1.10235 1.15054 0.94833 0.92212 0.94072 0.93025 0.94864 0.94134 0.93339 0.93400 0.92709 0.91990 0.91801 0.75064 0.79088 0.81186 0.75223 0.89010 0.89291 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 9.95 71.98 0.72 -5.05 16 2 C 0.14 5.70 5.75 86.38 0.50 6.19 16 3 N -0.59 -27.50 1.88 -678.03 -1.28 -28.78 16 4 C -0.26 -13.48 9.07 84.03 0.76 -12.72 16 5 H 0.06 2.90 7.89 -2.91 -0.02 2.88 16 6 C -0.03 -1.57 4.86 84.86 0.41 -1.16 16 7 N -0.91 -50.34 10.91 21.65 0.24 -50.10 16 8 Si 0.95 44.06 29.59 68.60 2.03 46.09 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.18 7.80 1.95 44.99 0.09 7.89 16 13 H 0.07 3.66 5.94 -2.39 -0.01 3.64 16 14 C -0.13 -5.38 9.05 71.98 0.65 -4.73 16 15 C 0.11 4.38 4.36 86.38 0.38 4.75 16 16 N -0.68 -27.64 4.28 -465.50 -1.99 -29.63 16 17 C 0.59 23.44 7.80 86.93 0.68 24.11 16 18 O -0.56 -24.00 16.95 -3.70 -0.06 -24.06 16 19 C -0.04 -1.34 7.18 42.85 0.31 -1.03 16 20 C -0.15 -4.57 10.94 22.82 0.25 -4.32 16 21 C 0.05 1.31 7.35 24.46 0.18 1.49 16 22 C 0.11 2.64 7.11 42.38 0.30 2.94 16 23 C -0.26 -4.33 10.77 22.21 0.24 -4.09 16 24 C 0.08 0.77 11.46 83.45 0.96 1.72 16 25 N -0.36 -4.84 4.01 -369.73 -1.48 -6.33 16 26 C 0.09 0.32 11.46 127.77 1.46 1.79 16 27 N -0.30 -6.70 12.60 -48.36 -0.61 -7.31 16 28 O 0.15 4.54 11.20 67.62 0.76 5.30 16 29 N -0.33 -11.76 11.82 -49.00 -0.58 -12.34 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.58 5.32 -2.39 -0.01 1.57 16 33 H 0.05 1.97 6.29 -2.39 -0.02 1.95 16 34 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 35 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 36 H 0.05 1.77 6.56 -2.39 -0.02 1.76 16 37 H 0.05 2.22 7.69 -2.39 -0.02 2.20 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.42 6.98 -2.38 -0.02 2.41 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 41 H 0.41 17.93 7.49 -92.71 -0.69 17.24 16 42 H 0.19 5.39 8.06 -2.91 -0.02 5.36 16 43 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.23 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 47 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -69.40 395.33 5.22 -64.19 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.31 Total: 25.17 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.88 Total: 17.79 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -5.70 Total: -134.48 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.69 Total: -18.76 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.40 5.22 -64.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153588489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.375 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds