Wall clock time and date at job start Wed Apr 1 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.46904 * 110.99938 * 291.72904 * 3 2 1 5 5 C 1.50701 * 109.47271 * 289.06778 * 4 3 2 6 6 O 1.21292 * 119.99962 * 354.55919 * 5 4 3 7 7 N 1.34775 * 120.00029 * 174.55474 * 5 4 3 8 8 C 1.37089 * 119.99844 * 180.02562 * 7 5 4 9 9 H 1.08003 * 120.00564 * 0.02562 * 8 7 5 10 10 C 1.38955 * 119.99685 * 180.02562 * 8 7 5 11 11 N 1.31404 * 120.00411 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99969 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47448 * 89.99513 * 12 10 8 14 14 H 1.48500 * 109.47188 * 210.00057 * 12 10 8 15 15 H 1.48502 * 109.47041 * 329.99685 * 12 10 8 16 16 C 1.46905 * 111.00119 * 55.68645 * 3 2 1 17 17 H 1.08995 * 109.47028 * 291.58760 * 16 3 2 18 18 C 1.53002 * 109.46709 * 171.59178 * 16 3 2 19 19 C 1.52995 * 109.46936 * 51.59198 * 16 3 2 20 20 N 1.46492 * 109.47289 * 55.92767 * 19 16 3 21 21 C 1.34783 * 120.00115 * 175.10586 * 20 19 16 22 22 O 1.21283 * 119.99852 * 359.72151 * 21 20 19 23 23 C 1.50696 * 120.00303 * 179.72676 * 21 20 19 24 24 H 1.08997 * 112.84998 * 48.79730 * 23 21 20 25 25 C 1.53782 * 113.61254 * 277.49504 * 23 21 20 26 26 C 1.53772 * 87.08307 * 220.01703 * 25 23 21 27 27 C 1.53779 * 87.08186 * 25.43308 * 26 25 23 28 28 F 1.39899 * 113.61625 * 220.02248 * 27 26 25 29 29 F 1.39900 * 113.61847 * 89.11501 * 27 26 25 30 30 H 1.08995 * 109.47132 * 62.19635 * 1 2 3 31 31 H 1.08995 * 109.46683 * 182.19425 * 1 2 3 32 32 H 1.09002 * 109.47039 * 302.19001 * 1 2 3 33 33 H 1.08994 * 109.47477 * 239.99848 * 2 1 3 34 34 H 1.09003 * 109.47169 * 119.99436 * 2 1 3 35 35 H 1.09007 * 109.46585 * 49.06789 * 4 3 2 36 36 H 1.09002 * 109.47107 * 169.06537 * 4 3 2 37 37 H 0.96998 * 119.99510 * 0.02562 * 7 5 4 38 38 H 0.97000 * 120.00675 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.46914 * 179.97438 * 18 16 3 40 40 H 1.08995 * 109.47034 * 299.99578 * 18 16 3 41 41 H 1.08998 * 109.47565 * 60.00037 * 18 16 3 42 42 H 1.08996 * 109.47255 * 295.92114 * 19 16 3 43 43 H 1.09002 * 109.46847 * 175.92682 * 19 16 3 44 44 H 0.96999 * 120.00284 * 354.82587 * 20 19 16 45 45 H 1.08998 * 113.61507 * 334.56633 * 25 23 21 46 46 H 1.09000 * 113.61632 * 105.46853 * 25 23 21 47 47 H 1.08999 * 113.61720 * 270.88469 * 26 25 23 48 48 H 1.09004 * 113.69469 * 139.98695 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7164 2.0506 -1.2740 5 6 2.5863 1.4744 -2.3614 6 8 3.4483 0.6673 -2.0845 7 7 2.4064 1.8559 -3.6414 8 6 3.1974 1.3313 -4.6306 9 1 3.9645 0.6121 -4.3843 10 6 3.0122 1.7251 -5.9503 11 7 2.0786 2.5998 -6.2502 12 14 4.0896 1.0098 -7.2983 13 1 3.4568 -0.2208 -7.8372 14 1 4.2440 2.0055 -8.3892 15 1 5.4247 0.6761 -6.7402 16 6 1.4662 2.1391 1.1328 17 1 0.3955 2.2813 0.9862 18 6 2.1542 3.5027 1.2225 19 6 1.7048 1.3612 2.4285 20 7 3.1360 1.0857 2.5761 21 6 3.5964 0.4949 3.6966 22 8 2.8265 0.1959 4.5848 23 6 5.0678 0.2058 3.8460 24 1 5.6944 1.0651 3.6070 25 6 5.5132 -1.0946 3.1563 26 6 6.4120 -1.3427 4.3791 27 6 5.4308 -0.4696 5.1790 28 9 6.0577 0.3881 6.0892 29 9 4.3751 -1.1900 5.7480 30 1 -0.3633 0.4793 -0.9090 31 1 -0.3632 -1.0269 0.0393 32 1 -0.3633 0.5475 0.8697 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.6676 1.8926 -1.5258 36 1 1.9108 3.1191 -1.1811 37 1 1.7172 2.5016 -3.8627 38 1 1.9491 2.8744 -7.1714 39 1 1.7432 4.0624 2.0627 40 1 3.2248 3.3606 1.3691 41 1 1.9842 4.0569 0.2994 42 1 1.1553 0.4206 2.3940 43 1 1.3593 1.9529 3.2762 44 1 3.7517 1.3247 1.8658 45 1 4.7133 -1.8267 3.0466 46 1 6.0682 -0.9309 2.2326 47 1 7.4069 -0.9076 4.2853 48 1 6.4339 -2.3834 4.7027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153974967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:08 Heat of formation + Delta-G solvation = -138.777980 kcal Electronic energy + Delta-G solvation = -31902.013507 eV Core-core repulsion = 27242.919333 eV Total energy + Delta-G solvation = -4659.094175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -48.90814 -47.22877 -40.26583 -39.17614 -37.66025 -37.04547 -34.54170 -33.83231 -31.85397 -31.28003 -29.97620 -27.93822 -26.80343 -25.76594 -25.22935 -24.18948 -22.79865 -21.34727 -20.16354 -19.79687 -18.82099 -18.21762 -17.81461 -17.48426 -16.77391 -16.44637 -16.23814 -15.85259 -15.69013 -15.11837 -14.85971 -14.61979 -14.42627 -14.20913 -13.99712 -13.88896 -13.70769 -13.47933 -13.45451 -13.20839 -13.05822 -12.85732 -12.51391 -12.30990 -12.12273 -12.05440 -11.72427 -11.64468 -11.60142 -11.49537 -11.47598 -11.36702 -11.11552 -10.97720 -10.61122 -10.47696 -10.42384 -10.24644 -9.81926 -9.50670 -9.06879 -8.50084 -8.00273 -7.92862 -6.44705 -3.85515 2.43710 2.93802 3.14766 3.23798 3.28867 3.29741 3.45224 3.85423 3.88940 4.06034 4.07522 4.15189 4.21173 4.62996 4.74123 4.89011 4.95846 5.07385 5.13478 5.15164 5.19827 5.23088 5.27716 5.31176 5.37450 5.46511 5.50881 5.54415 5.55068 5.66703 5.73544 5.78431 5.84555 5.94480 6.02675 6.18260 6.21208 6.28737 6.37517 6.48016 7.18817 7.29472 7.47958 7.51901 8.03340 8.13995 8.58984 9.15468 9.52139 10.03826 10.73084 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.002461 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.850192 B =11376.358670 C =12427.958747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.506 5.506 4 C 0.038 3.962 5 C 0.446 3.554 6 O -0.577 6.577 7 N -0.566 5.566 8 C -0.298 4.298 9 H 0.103 0.897 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.928 3.072 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.062 3.938 17 H 0.059 0.941 18 C -0.147 4.147 19 C 0.127 3.873 20 N -0.707 5.707 21 C 0.519 3.481 22 O -0.533 6.533 23 C -0.168 4.168 24 H 0.139 0.861 25 C -0.117 4.117 26 C -0.165 4.165 27 C 0.279 3.721 28 F -0.191 7.191 29 F -0.159 7.159 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.414 0.586 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 -1.713 17.752 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.079 4.079 3 N -0.230 5.230 4 C -0.093 4.093 5 C 0.231 3.769 6 O -0.461 6.461 7 N -0.203 5.203 8 C -0.427 4.427 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.756 3.244 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.047 4.047 17 H 0.076 0.924 18 C -0.204 4.204 19 C 0.003 3.997 20 N -0.360 5.360 21 C 0.303 3.697 22 O -0.409 6.409 23 C -0.190 4.190 24 H 0.157 0.843 25 C -0.155 4.155 26 C -0.203 4.203 27 C 0.242 3.758 28 F -0.172 7.172 29 F -0.140 7.140 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.251 0.749 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.133 0.867 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.702 -2.383 18.476 18.824 hybrid contribution -0.736 0.404 -1.262 1.516 sum 1.966 -1.979 17.215 17.439 Atomic orbital electron populations 1.22491 0.98922 1.02267 1.01663 1.22239 0.91882 0.89904 1.03894 1.61858 1.58415 1.01842 1.00882 1.21979 0.98123 0.99423 0.89795 1.19720 0.87522 0.86402 0.83264 1.90501 1.36489 1.36880 1.82205 1.41876 1.33280 1.40006 1.05145 1.19670 1.14356 1.22901 0.85814 0.87963 1.25247 0.97465 0.96762 0.98467 1.69603 1.32515 1.32014 1.20260 0.85882 0.80153 0.78403 0.79996 1.20466 1.20955 1.19416 1.21949 0.98004 0.94197 0.90527 0.92357 1.21891 1.01528 0.95079 1.01918 1.21440 0.81800 0.99904 0.96557 1.45867 1.09634 1.60958 1.19515 1.19992 0.89295 0.77863 0.82502 1.90775 1.57829 1.51727 1.40592 1.24031 0.96730 1.02134 0.96137 0.84274 1.22767 0.99763 0.94539 0.98441 1.24079 0.99349 1.01996 0.94842 1.21790 0.84418 0.86488 0.83092 1.93011 1.81985 1.71323 1.70886 1.93098 1.57327 1.77272 1.86298 0.92379 0.92233 0.92782 0.88948 0.90969 0.93084 0.89126 0.77599 0.91891 0.92253 0.91702 0.91877 0.91292 0.90997 0.74857 0.88266 0.87800 0.86655 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 9.00 37.16 0.33 -2.04 16 2 C 0.05 0.69 5.19 -3.82 -0.02 0.67 16 3 N -0.51 -7.02 3.61 -228.07 -0.82 -7.84 16 4 C 0.04 0.60 5.22 -4.97 -0.03 0.58 16 5 C 0.45 9.71 7.32 -10.99 -0.08 9.63 16 6 O -0.58 -14.32 14.65 5.55 0.08 -14.24 16 7 N -0.57 -13.63 5.29 -10.96 -0.06 -13.69 16 8 C -0.30 -7.98 9.68 -14.94 -0.14 -8.13 16 9 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 10 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 11 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 12 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 16 C 0.06 0.68 1.68 -67.71 -0.11 0.56 16 17 H 0.06 0.61 6.69 -51.93 -0.35 0.26 16 18 C -0.15 -1.47 8.99 37.16 0.33 -1.14 16 19 C 0.13 1.41 4.41 -4.05 -0.02 1.39 16 20 N -0.71 -7.85 4.89 -60.30 -0.29 -8.14 16 21 C 0.52 6.41 7.31 -10.98 -0.08 6.33 16 22 O -0.53 -8.59 14.74 5.56 0.08 -8.51 16 23 C -0.17 -1.59 4.03 -90.96 -0.37 -1.96 16 24 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 25 C -0.12 -0.92 7.61 -25.92 -0.20 -1.12 16 26 C -0.16 -1.16 7.87 -25.92 -0.20 -1.37 16 27 C 0.28 2.99 3.02 -25.92 -0.08 2.92 16 28 F -0.19 -2.24 17.41 2.25 0.04 -2.20 16 29 F -0.16 -2.21 15.20 2.25 0.03 -2.18 16 30 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.58 5.75 -51.93 -0.30 0.28 16 33 H 0.09 1.64 6.44 -51.93 -0.33 1.31 16 34 H 0.07 0.98 6.41 -51.93 -0.33 0.64 16 35 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 36 H 0.09 1.31 5.87 -51.93 -0.30 1.01 16 37 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.67 7.23 -51.93 -0.38 0.30 16 41 H 0.06 0.66 6.24 -51.93 -0.32 0.33 16 42 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.41 4.50 7.39 -40.82 -0.30 4.19 16 45 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -32.12 385.67 -6.98 -39.10 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.80 Total: 12.85 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.76 Total: 6.80 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.45 Total: -52.91 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.16 Total: -22.75 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.12 -6.98 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153974967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.677 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds