Wall clock time and date at job start Wed Apr 1 2020 04:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47087 * 2 1 4 4 C 1.36936 * 119.99756 * 91.22138 * 3 2 1 5 5 H 1.07994 * 119.99966 * 227.95059 * 4 3 2 6 6 C 1.38816 * 120.00176 * 48.23254 * 4 3 2 7 7 N 1.31616 * 119.99773 * 197.42298 * 6 4 3 8 8 Si 1.86800 * 119.99674 * 17.41499 * 6 4 3 9 9 H 1.48506 * 109.46787 * 94.41216 * 8 6 4 10 10 H 1.48505 * 109.46932 * 214.40663 * 8 6 4 11 11 H 1.48491 * 109.47414 * 334.41076 * 8 6 4 12 12 C 1.46500 * 119.99851 * 271.22467 * 3 2 1 13 13 H 1.08999 * 109.46602 * 180.08128 * 12 3 2 14 14 C 1.52995 * 109.47070 * 60.08020 * 12 3 2 15 15 C 1.53000 * 109.46863 * 300.08152 * 12 3 2 16 16 N 1.46507 * 109.46741 * 296.03972 * 15 12 3 17 17 C 1.34785 * 119.99498 * 186.18529 * 16 15 12 18 18 O 1.21673 * 119.99808 * 2.37286 * 17 16 15 19 19 C 1.46909 * 119.99805 * 182.36634 * 17 16 15 20 20 C 1.42474 * 128.39673 * 0.62169 * 19 17 16 21 21 N 1.29880 * 106.42005 * 179.97438 * 20 19 17 22 22 O 1.20737 * 112.81068 * 359.97438 * 21 20 19 23 23 C 1.34259 * 111.95066 * 359.71660 * 22 21 20 24 24 C 1.47360 * 127.19439 * 180.32439 * 23 22 21 25 25 C 1.41302 * 126.41051 * 134.06126 * 24 23 22 26 26 N 1.30477 * 108.05800 * 179.97438 * 25 24 23 27 27 N 1.39933 * 108.90589 * 359.97438 * 26 25 24 28 28 C 1.46504 * 125.76522 * 180.02562 * 27 26 25 29 29 C 1.34459 * 108.47055 * 359.75403 * 27 26 25 30 30 H 1.08999 * 109.47685 * 305.82598 * 1 2 3 31 31 H 1.09003 * 109.47549 * 65.82742 * 1 2 3 32 32 H 1.08999 * 109.47262 * 185.82426 * 1 2 3 33 33 H 1.08994 * 109.47431 * 239.99985 * 2 1 3 34 34 H 1.09002 * 109.46817 * 119.99646 * 2 1 3 35 35 H 0.97005 * 119.99549 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47205 * 60.00178 * 14 12 3 37 37 H 1.09005 * 109.46618 * 179.97438 * 14 12 3 38 38 H 1.08999 * 109.47496 * 299.99560 * 14 12 3 39 39 H 1.08991 * 109.47212 * 56.03939 * 15 12 3 40 40 H 1.09003 * 109.46908 * 176.04397 * 15 12 3 41 41 H 0.96991 * 120.00537 * 6.18682 * 16 15 12 42 42 H 1.08004 * 126.79237 * 0.03744 * 20 19 17 43 43 H 1.08008 * 125.96697 * 359.97438 * 25 24 23 44 44 H 1.08998 * 109.47353 * 90.02449 * 28 27 26 45 45 H 1.08999 * 109.47113 * 210.02698 * 28 27 26 46 46 H 1.08999 * 109.46976 * 330.02777 * 28 27 26 47 47 H 1.07999 * 126.31064 * 180.24331 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2703 2.0183 1.1857 5 1 1.8896 3.0147 1.3549 6 6 3.0202 1.3857 2.1678 7 7 2.9823 1.8233 3.4085 8 14 4.0826 -0.0865 1.7284 9 1 5.4675 0.3691 1.4462 10 1 4.0979 -1.0426 2.8647 11 1 3.5270 -0.7565 0.5253 12 6 2.2369 2.0809 -1.2685 13 1 2.5995 3.0893 -1.0693 14 6 0.9196 2.1562 -2.0429 15 6 3.2736 1.3206 -2.0981 16 7 4.5609 1.3301 -1.3987 17 6 5.6577 0.8269 -1.9991 18 8 5.5879 0.4043 -3.1379 19 6 6.9373 0.7888 -1.2785 20 6 7.2177 1.2195 0.0503 21 7 8.4802 0.9903 0.2518 22 8 9.0255 0.4987 -0.7066 23 6 8.1742 0.3138 -1.7283 24 6 8.4795 -0.2652 -3.0485 25 6 7.7194 -1.2401 -3.7329 26 7 8.3130 -1.4931 -4.8670 27 7 9.4644 -0.7036 -4.9620 28 6 10.4054 -0.6934 -6.0848 29 6 9.5581 0.0486 -3.8514 30 1 -0.3634 0.6015 0.8332 31 1 -0.3634 0.4208 -0.9376 32 1 -0.3634 -1.0223 0.1043 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5060 1.3810 4.0949 36 1 0.1811 2.6978 -1.4519 37 1 1.0822 2.6771 -2.9865 38 1 0.5570 1.1477 -2.2421 39 1 2.9434 0.2914 -2.2375 40 1 3.3846 1.8015 -3.0700 41 1 4.6239 1.6984 -0.5036 42 1 6.5186 1.6503 0.7518 43 1 6.8065 -1.6961 -3.3791 44 1 10.0920 0.0528 -6.8149 45 1 11.4032 -0.4487 -5.7206 46 1 10.4212 -1.6769 -6.5545 47 1 10.3354 0.7640 -3.6272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154464590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:26 Heat of formation + Delta-G solvation = 140.014354 kcal Electronic energy + Delta-G solvation = -31485.846190 eV Core-core repulsion = 27289.530545 eV Total energy + Delta-G solvation = -4196.315645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.78854 -41.28560 -39.24467 -37.20965 -34.15821 -34.02363 -33.57240 -32.28830 -32.16229 -30.96609 -29.62350 -28.92248 -27.16766 -26.26944 -24.21798 -23.51438 -22.85163 -22.29485 -21.22387 -20.90157 -20.08963 -19.36725 -18.19906 -17.54682 -17.09413 -16.96009 -16.03358 -15.70124 -15.63594 -15.54176 -14.98775 -14.79235 -14.46196 -14.13092 -13.65510 -13.54952 -13.31177 -13.06985 -13.03893 -12.81342 -12.66021 -12.62073 -12.33933 -12.07660 -11.91682 -11.67169 -11.54339 -11.47205 -10.99891 -10.84702 -10.79783 -10.28646 -10.19411 -9.99855 -9.87399 -9.82841 -9.78046 -9.58474 -9.31418 -8.64799 -8.55401 -8.32220 -6.74193 -6.10432 -3.66766 0.85813 1.69372 2.00259 2.15503 2.55646 3.03843 3.16828 3.39022 3.43348 3.54252 3.63422 4.19755 4.40432 4.45543 4.49947 4.68863 4.79101 4.81844 4.90423 5.02592 5.07707 5.17287 5.23707 5.37017 5.46272 5.63487 5.66946 5.78593 5.92967 5.97704 6.00224 6.05657 6.16874 6.24869 6.34785 6.37517 6.38461 6.59006 6.61602 6.69087 6.72243 6.89026 6.93674 7.13270 7.45453 7.91402 8.01180 8.26821 8.39031 8.53844 8.92901 9.58905 10.07448 11.03595 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003593 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.345579 B = 7790.869370 C = 9046.450656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 N -0.599 5.599 4 C -0.277 4.277 5 H 0.073 0.927 6 C 0.045 3.955 7 N -0.896 5.896 8 Si 0.850 3.150 9 H -0.275 1.275 10 H -0.299 1.299 11 H -0.248 1.248 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.702 5.702 17 C 0.591 3.409 18 O -0.542 6.542 19 C -0.248 4.248 20 C 0.035 3.965 21 N -0.369 5.369 22 O 0.102 5.898 23 C 0.120 3.880 24 C -0.188 4.188 25 C 0.128 3.872 26 N -0.301 5.301 27 N -0.368 5.368 28 C 0.100 3.900 29 C 0.097 3.903 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.409 0.591 42 H 0.204 0.796 43 H 0.191 0.809 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -2.790 -15.668 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.322 5.322 4 C -0.406 4.406 5 H 0.091 0.909 6 C -0.157 4.157 7 N -0.535 5.535 8 Si 0.679 3.321 9 H -0.203 1.203 10 H -0.227 1.227 11 H -0.173 1.173 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.353 5.353 17 C 0.377 3.623 18 O -0.422 6.422 19 C -0.256 4.256 20 C -0.145 4.145 21 N -0.074 5.074 22 O 0.041 5.959 23 C 0.053 3.947 24 C -0.201 4.201 25 C -0.059 4.059 26 N -0.121 5.121 27 N -0.146 5.146 28 C -0.041 4.041 29 C -0.053 4.053 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.246 0.754 42 H 0.221 0.779 43 H 0.208 0.792 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 12.868 -3.605 -16.452 21.196 hybrid contribution -0.110 -0.139 0.976 0.992 sum 12.758 -3.744 -15.476 20.403 Atomic orbital electron populations 1.22476 0.99420 0.99465 1.01692 1.21243 0.91817 0.86765 0.98863 1.44141 1.75491 1.11228 1.01301 1.18714 1.28889 1.02238 0.90713 0.90948 1.25761 0.96941 0.97516 0.95455 1.69843 1.41176 1.42089 1.00431 0.87618 0.81538 0.84002 0.78923 1.20301 1.22656 1.17260 1.20845 0.91809 0.96116 0.86505 0.90358 1.22275 0.98830 1.01496 0.99141 1.22044 0.82904 1.01609 0.95514 1.45830 1.08076 1.61020 1.20397 1.16694 0.82048 0.78264 0.85312 1.90770 1.85457 1.48662 1.17302 1.21479 0.96130 1.11645 0.96350 1.25432 0.92961 1.00232 0.95827 1.73524 1.10744 1.15729 1.07434 1.84863 1.35854 1.58836 1.16326 1.21992 0.87806 0.95850 0.89096 1.17665 1.01119 1.08183 0.93129 1.23952 0.97993 0.94042 0.89935 1.77269 0.97082 1.17266 1.20477 1.48291 1.20183 1.30612 1.15543 1.21939 0.90416 1.04810 0.86950 1.22927 0.98777 0.96321 0.87289 0.92318 0.93301 0.94703 0.94575 0.93036 0.92585 0.92147 0.93561 0.92636 0.92030 0.91778 0.75421 0.77916 0.79213 0.90375 0.89197 0.88911 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.86 37.16 0.37 -2.71 16 2 C 0.14 2.78 3.89 -4.04 -0.02 2.77 16 3 N -0.60 -12.47 1.60 -165.67 -0.26 -12.73 16 4 C -0.28 -6.91 9.75 -15.06 -0.15 -7.06 16 5 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 6 C 0.05 1.18 5.31 -17.43 -0.09 1.09 16 7 N -0.90 -25.56 13.97 55.49 0.78 -24.79 16 8 Si 0.85 19.56 24.26 -169.99 -4.12 15.44 16 9 H -0.28 -5.86 3.99 56.52 0.23 -5.64 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.53 4.99 56.52 0.28 -5.25 16 12 C 0.15 2.71 2.78 -67.93 -0.19 2.52 16 13 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 14 C -0.16 -2.38 8.25 37.15 0.31 -2.07 16 15 C 0.10 1.77 5.06 -4.04 -0.02 1.75 16 16 N -0.70 -12.60 5.00 -61.54 -0.31 -12.90 16 17 C 0.59 10.64 7.79 -12.75 -0.10 10.54 16 18 O -0.54 -10.35 14.10 5.21 0.07 -10.28 16 19 C -0.25 -4.21 6.36 -104.12 -0.66 -4.87 16 20 C 0.03 0.59 10.49 -16.75 -0.18 0.42 16 21 N -0.37 -6.22 11.97 30.85 0.37 -5.85 16 22 O 0.10 1.54 11.17 16.64 0.19 1.73 16 23 C 0.12 1.82 7.40 -35.24 -0.26 1.56 16 24 C -0.19 -2.55 5.64 -105.08 -0.59 -3.14 16 25 C 0.13 1.84 10.27 -16.96 -0.17 1.67 16 26 N -0.30 -4.11 12.50 30.87 0.39 -3.72 16 27 N -0.37 -3.78 3.99 -67.54 -0.27 -4.05 16 28 C 0.10 0.51 11.44 59.85 0.68 1.20 16 29 C 0.10 1.00 11.51 -16.46 -0.19 0.81 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.79 5.47 -51.93 -0.28 0.51 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.69 6.29 -51.93 -0.33 0.36 16 34 H 0.05 1.15 4.44 -51.93 -0.23 0.92 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.82 5.98 -51.93 -0.31 0.51 16 39 H 0.06 1.09 6.51 -51.93 -0.34 0.75 16 40 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.41 7.69 5.84 -40.82 -0.24 7.45 16 42 H 0.20 3.52 6.17 -52.48 -0.32 3.20 16 43 H 0.19 2.76 7.50 -52.48 -0.39 2.37 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -31.51 376.07 -5.28 -36.79 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.51 Total: 10.25 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.26 Total: 4.46 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 0.69 Total: -64.04 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.26 Total: -8.56 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.12 Total: 15.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.51 -5.28 -36.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154464590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.802 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds