Wall clock time and date at job start Wed Apr 1 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47087 * 2 1 4 4 C 1.36936 * 119.99756 * 91.22138 * 3 2 1 5 5 H 1.07994 * 119.99966 * 227.95059 * 4 3 2 6 6 C 1.38816 * 120.00176 * 48.23254 * 4 3 2 7 7 N 1.31616 * 119.99773 * 197.42298 * 6 4 3 8 8 Si 1.86800 * 119.99674 * 17.41499 * 6 4 3 9 9 H 1.48506 * 109.46787 * 94.41216 * 8 6 4 10 10 H 1.48505 * 109.46932 * 214.40663 * 8 6 4 11 11 H 1.48491 * 109.47414 * 334.41076 * 8 6 4 12 12 C 1.46500 * 119.99851 * 271.22467 * 3 2 1 13 13 H 1.08999 * 109.46602 * 180.08128 * 12 3 2 14 14 C 1.52995 * 109.47070 * 60.08020 * 12 3 2 15 15 C 1.53000 * 109.46863 * 300.08152 * 12 3 2 16 16 N 1.46507 * 109.46741 * 296.03972 * 15 12 3 17 17 C 1.34785 * 119.99498 * 186.18529 * 16 15 12 18 18 O 1.21673 * 119.99808 * 2.37286 * 17 16 15 19 19 C 1.46909 * 119.99805 * 182.36634 * 17 16 15 20 20 C 1.42474 * 128.39673 * 0.62169 * 19 17 16 21 21 N 1.29880 * 106.42005 * 179.97438 * 20 19 17 22 22 O 1.20737 * 112.81068 * 359.97438 * 21 20 19 23 23 C 1.34259 * 111.95066 * 359.71660 * 22 21 20 24 24 C 1.47360 * 127.19439 * 180.32439 * 23 22 21 25 25 C 1.41302 * 126.41051 * 134.06126 * 24 23 22 26 26 N 1.30477 * 108.05800 * 179.97438 * 25 24 23 27 27 N 1.39933 * 108.90589 * 359.97438 * 26 25 24 28 28 C 1.46504 * 125.76522 * 180.02562 * 27 26 25 29 29 C 1.34459 * 108.47055 * 359.75403 * 27 26 25 30 30 H 1.08999 * 109.47685 * 305.82598 * 1 2 3 31 31 H 1.09003 * 109.47549 * 65.82742 * 1 2 3 32 32 H 1.08999 * 109.47262 * 185.82426 * 1 2 3 33 33 H 1.08994 * 109.47431 * 239.99985 * 2 1 3 34 34 H 1.09002 * 109.46817 * 119.99646 * 2 1 3 35 35 H 0.97005 * 119.99549 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47205 * 60.00178 * 14 12 3 37 37 H 1.09005 * 109.46618 * 179.97438 * 14 12 3 38 38 H 1.08999 * 109.47496 * 299.99560 * 14 12 3 39 39 H 1.08991 * 109.47212 * 56.03939 * 15 12 3 40 40 H 1.09003 * 109.46908 * 176.04397 * 15 12 3 41 41 H 0.96991 * 120.00537 * 6.18682 * 16 15 12 42 42 H 1.08004 * 126.79237 * 0.03744 * 20 19 17 43 43 H 1.08008 * 125.96697 * 359.97438 * 25 24 23 44 44 H 1.08998 * 109.47353 * 90.02449 * 28 27 26 45 45 H 1.08999 * 109.47113 * 210.02698 * 28 27 26 46 46 H 1.08999 * 109.46976 * 330.02777 * 28 27 26 47 47 H 1.07999 * 126.31064 * 180.24331 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2703 2.0183 1.1857 5 1 1.8896 3.0147 1.3549 6 6 3.0202 1.3857 2.1678 7 7 2.9823 1.8233 3.4085 8 14 4.0826 -0.0865 1.7284 9 1 5.4675 0.3691 1.4462 10 1 4.0979 -1.0426 2.8647 11 1 3.5270 -0.7565 0.5253 12 6 2.2369 2.0809 -1.2685 13 1 2.5995 3.0893 -1.0693 14 6 0.9196 2.1562 -2.0429 15 6 3.2736 1.3206 -2.0981 16 7 4.5609 1.3301 -1.3987 17 6 5.6577 0.8269 -1.9991 18 8 5.5879 0.4043 -3.1379 19 6 6.9373 0.7888 -1.2785 20 6 7.2177 1.2195 0.0503 21 7 8.4802 0.9903 0.2518 22 8 9.0255 0.4987 -0.7066 23 6 8.1742 0.3138 -1.7283 24 6 8.4795 -0.2652 -3.0485 25 6 7.7194 -1.2401 -3.7329 26 7 8.3130 -1.4931 -4.8670 27 7 9.4644 -0.7036 -4.9620 28 6 10.4054 -0.6934 -6.0848 29 6 9.5581 0.0486 -3.8514 30 1 -0.3634 0.6015 0.8332 31 1 -0.3634 0.4208 -0.9376 32 1 -0.3634 -1.0223 0.1043 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5060 1.3810 4.0949 36 1 0.1811 2.6978 -1.4519 37 1 1.0822 2.6771 -2.9865 38 1 0.5570 1.1477 -2.2421 39 1 2.9434 0.2914 -2.2375 40 1 3.3846 1.8015 -3.0700 41 1 4.6239 1.6984 -0.5036 42 1 6.5186 1.6503 0.7518 43 1 6.8065 -1.6961 -3.3791 44 1 10.0920 0.0528 -6.8149 45 1 11.4032 -0.4487 -5.7206 46 1 10.4212 -1.6769 -6.5545 47 1 10.3354 0.7640 -3.6272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154464590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:24 Heat of formation + Delta-G solvation = 118.739362 kcal Electronic energy + Delta-G solvation = -31486.768743 eV Core-core repulsion = 27289.530545 eV Total energy + Delta-G solvation = -4197.238198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.04765 -42.17319 -40.64674 -38.77596 -35.59327 -35.15923 -34.67448 -34.01204 -33.33083 -32.45725 -30.65818 -30.55357 -28.04427 -27.40706 -25.78442 -25.08754 -23.98036 -23.84151 -22.25444 -21.89116 -21.44947 -20.81790 -19.31872 -18.82186 -18.77026 -18.23805 -17.40705 -17.16081 -16.82309 -16.57659 -16.41957 -16.05543 -15.66681 -15.44091 -15.10246 -14.86792 -14.50008 -14.41565 -14.21088 -14.04873 -13.96989 -13.65171 -13.54330 -13.31129 -13.27211 -13.10750 -13.03545 -12.79351 -12.54533 -12.34865 -11.97555 -11.95263 -11.68952 -11.56291 -11.41389 -11.18234 -11.04811 -10.95832 -10.52364 -10.50669 -10.00419 -9.35103 -8.53993 -8.16148 -5.69193 -0.27736 0.67219 0.80499 1.31937 1.34938 1.47686 1.55034 1.56618 1.89930 2.19506 2.32806 2.45412 3.09432 3.13367 3.30777 3.37193 3.54562 3.80357 3.86389 3.99269 4.09072 4.21553 4.34536 4.41440 4.44813 4.47144 4.57914 4.61827 4.67096 4.72640 4.74871 4.75913 4.79690 4.83542 4.88023 5.04498 5.12175 5.23782 5.34736 5.36928 5.41158 5.56265 5.64588 5.92021 6.01013 6.32537 6.49025 6.53451 7.03129 7.08695 7.15093 7.66192 8.15471 9.01405 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003593 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.345579 B = 7790.869370 C = 9046.450656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 N -0.604 5.604 4 C -0.254 4.254 5 H 0.036 0.964 6 C 0.000 4.000 7 N -0.946 5.946 8 Si 0.906 3.094 9 H -0.255 1.255 10 H -0.325 1.325 11 H -0.235 1.235 12 C 0.154 3.846 13 H 0.070 0.930 14 C -0.150 4.150 15 C 0.111 3.889 16 N -0.708 5.708 17 C 0.593 3.407 18 O -0.555 6.555 19 C -0.273 4.273 20 C 0.026 3.974 21 N -0.380 5.380 22 O 0.114 5.886 23 C 0.145 3.855 24 C -0.226 4.226 25 C 0.115 3.885 26 N -0.328 5.328 27 N -0.360 5.360 28 C 0.087 3.913 29 C 0.126 3.874 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.403 0.597 42 H 0.197 0.803 43 H 0.177 0.823 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.096 0.904 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.797 -3.282 -18.963 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 N -0.328 5.328 4 C -0.384 4.384 5 H 0.054 0.946 6 C -0.197 4.197 7 N -0.589 5.589 8 Si 0.734 3.266 9 H -0.181 1.181 10 H -0.254 1.254 11 H -0.159 1.159 12 C 0.048 3.952 13 H 0.088 0.912 14 C -0.208 4.208 15 C -0.013 4.013 16 N -0.358 5.358 17 C 0.380 3.620 18 O -0.435 6.435 19 C -0.281 4.281 20 C -0.152 4.152 21 N -0.085 5.085 22 O 0.053 5.947 23 C 0.078 3.922 24 C -0.239 4.239 25 C -0.072 4.072 26 N -0.148 5.148 27 N -0.138 5.138 28 C -0.051 4.051 29 C -0.027 4.027 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.239 0.761 42 H 0.213 0.787 43 H 0.194 0.806 44 H 0.109 0.891 45 H 0.145 0.855 46 H 0.115 0.885 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 14.670 -4.101 -19.825 25.001 hybrid contribution -0.624 0.038 1.826 1.930 sum 14.047 -4.063 -17.999 23.190 Atomic orbital electron populations 1.22359 0.97573 1.00529 1.01679 1.21275 0.93360 0.85979 0.98501 1.44169 1.75843 1.11526 1.01232 1.18496 1.27032 1.00753 0.92086 0.94644 1.26233 0.98245 1.00167 0.95093 1.69976 1.43026 1.44290 1.01618 0.86750 0.81285 0.80634 0.77912 1.18135 1.25443 1.15866 1.20939 0.93596 0.95328 0.85324 0.91218 1.22164 0.96703 1.02228 0.99752 1.21995 0.82166 1.01336 0.95831 1.45915 1.08549 1.61160 1.20187 1.16771 0.82276 0.77773 0.85144 1.90760 1.85696 1.49270 1.17797 1.21405 0.96573 1.13574 0.96545 1.25322 0.93142 1.00720 0.96059 1.73498 1.10609 1.16313 1.08105 1.84851 1.35489 1.58363 1.16014 1.22186 0.87008 0.93752 0.89298 1.17790 1.03169 1.09784 0.93177 1.23827 0.98072 0.94745 0.90555 1.77203 0.98690 1.18654 1.20278 1.48748 1.19420 1.29113 1.16471 1.22425 0.91019 1.05662 0.86034 1.23550 0.97903 0.95285 0.85940 0.94915 0.91238 0.92581 0.92761 0.95472 0.93072 0.93108 0.90744 0.91898 0.92275 0.90106 0.76081 0.78668 0.80608 0.89061 0.85509 0.88546 0.75427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.86 71.98 0.71 -4.87 16 2 C 0.13 5.23 3.89 86.38 0.34 5.57 16 3 N -0.60 -24.99 1.60 -678.05 -1.08 -26.07 16 4 C -0.25 -13.02 9.75 84.03 0.82 -12.20 16 5 H 0.04 2.08 8.06 -2.91 -0.02 2.05 16 6 C 0.00 0.01 5.31 84.86 0.45 0.46 16 7 N -0.95 -56.35 13.97 21.65 0.30 -56.05 16 8 Si 0.91 41.80 24.26 68.60 1.66 43.46 16 9 H -0.26 -10.76 3.99 99.48 0.40 -10.37 16 10 H -0.33 -16.41 7.11 99.48 0.71 -15.71 16 11 H -0.24 -10.20 4.99 99.48 0.50 -9.71 16 12 C 0.15 5.22 2.78 44.99 0.13 5.35 16 13 H 0.07 2.48 7.89 -2.39 -0.02 2.46 16 14 C -0.15 -4.12 8.25 71.98 0.59 -3.53 16 15 C 0.11 3.57 5.06 86.38 0.44 4.01 16 16 N -0.71 -24.76 5.00 -466.83 -2.33 -27.10 16 17 C 0.59 20.84 7.79 86.51 0.67 21.51 16 18 O -0.55 -20.59 14.10 -4.26 -0.06 -20.65 16 19 C -0.27 -9.04 6.36 -19.54 -0.12 -9.17 16 20 C 0.03 0.90 10.49 86.04 0.90 1.80 16 21 N -0.38 -12.46 11.97 -56.82 -0.68 -13.14 16 22 O 0.11 3.25 11.17 69.77 0.78 4.03 16 23 C 0.15 4.18 7.40 25.08 0.19 4.36 16 24 C -0.23 -5.69 5.64 -20.16 -0.11 -5.81 16 25 C 0.11 3.20 10.27 85.65 0.88 4.08 16 26 N -0.33 -8.42 12.50 -56.25 -0.70 -9.12 16 27 N -0.36 -6.20 3.99 -367.59 -1.47 -7.66 16 28 C 0.09 0.54 11.44 127.77 1.46 2.00 16 29 C 0.13 2.10 11.51 84.25 0.97 3.07 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.08 5.47 -2.39 -0.01 2.07 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.94 6.29 -2.39 -0.02 1.93 16 34 H 0.03 1.19 4.44 -2.39 -0.01 1.18 16 35 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.65 5.98 -2.39 -0.01 1.64 16 39 H 0.06 1.95 6.51 -2.39 -0.02 1.93 16 40 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 41 H 0.40 15.07 5.84 -92.71 -0.54 14.53 16 42 H 0.20 6.83 6.17 -2.91 -0.02 6.82 16 43 H 0.18 5.20 7.50 -2.91 -0.02 5.17 16 44 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -71.35 376.07 4.69 -66.66 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.04 Total: 28.99 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 8.31 Total: 16.64 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -5.96 Total: -139.14 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.72 Total: -16.61 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.66 Total: 43.46 kcal Total: -71.35 4.69 -66.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154464590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.401 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds