Wall clock time and date at job start Wed Apr 1 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47419 * 2 1 4 4 C 1.36941 * 119.99909 * 274.04294 * 3 2 1 5 5 H 1.07999 * 120.00027 * 174.70890 * 4 3 2 6 6 C 1.38817 * 119.99752 * 354.70173 * 4 3 2 7 7 N 1.31623 * 119.99850 * 31.38809 * 6 4 3 8 8 Si 1.86797 * 119.99974 * 211.38803 * 6 4 3 9 9 H 1.48496 * 109.47233 * 84.99802 * 8 6 4 10 10 H 1.48500 * 109.47106 * 204.99916 * 8 6 4 11 11 H 1.48500 * 109.46844 * 324.99752 * 8 6 4 12 12 C 1.46497 * 120.00244 * 94.03684 * 3 2 1 13 13 H 1.08997 * 109.47471 * 180.02562 * 12 3 2 14 14 C 1.53007 * 109.46709 * 59.99942 * 12 3 2 15 15 C 1.52998 * 109.47143 * 300.00457 * 12 3 2 16 16 N 1.46497 * 109.47360 * 304.99696 * 15 12 3 17 17 C 1.34770 * 120.00449 * 179.97438 * 16 15 12 18 18 O 1.21490 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.48331 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.42273 * 126.94135 * 180.02562 * 19 17 16 21 21 C 1.35309 * 103.92359 * 180.02562 * 20 19 17 22 22 C 1.50703 * 126.66305 * 180.02562 * 21 20 19 23 23 N 1.46493 * 109.47169 * 90.00182 * 22 21 20 24 24 C 1.34948 * 126.03826 * 124.71576 * 23 22 21 25 25 C 1.35322 * 107.74542 * 179.83841 * 24 23 22 26 26 C 1.39858 * 107.92073 * 0.42284 * 25 24 23 27 27 N 1.30841 * 108.20376 * 359.73598 * 26 25 24 28 28 O 1.34009 * 106.67257 * 0.02562 * 21 20 19 29 29 N 1.20912 * 111.84232 * 359.70696 * 28 21 20 30 30 H 1.09001 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47197 * 300.00588 * 1 2 3 32 32 H 1.09004 * 109.47248 * 59.99680 * 1 2 3 33 33 H 1.09004 * 109.47057 * 240.00174 * 2 1 3 34 34 H 1.09006 * 109.47157 * 119.99789 * 2 1 3 35 35 H 0.97002 * 119.99285 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.47531 * 299.99905 * 14 12 3 37 37 H 1.09001 * 109.46793 * 60.00735 * 14 12 3 38 38 H 1.08998 * 109.46520 * 180.02562 * 14 12 3 39 39 H 1.08998 * 109.47163 * 184.99536 * 15 12 3 40 40 H 1.09005 * 109.47429 * 64.99733 * 15 12 3 41 41 H 0.97001 * 119.99684 * 0.02562 * 16 15 12 42 42 H 1.08009 * 128.03664 * 0.02562 * 20 19 17 43 43 H 1.09004 * 109.46628 * 210.00072 * 22 21 20 44 44 H 1.08995 * 109.47290 * 329.99666 * 22 21 20 45 45 H 1.08003 * 126.12934 * 359.97438 * 24 23 22 46 46 H 1.08000 * 126.03477 * 180.15816 * 25 24 23 47 47 H 1.08003 * 125.90002 * 179.76389 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4166 -2.4608 8 14 2.9304 1.8985 -3.9039 9 1 4.2410 1.2003 -3.9088 10 1 2.1678 1.5281 -5.1231 11 1 3.1517 3.3668 -3.8855 12 6 2.3468 2.0421 1.2655 13 1 2.6904 3.0572 1.0669 14 6 3.4518 1.2593 1.9779 15 6 1.1021 2.0902 2.1538 16 7 0.0068 2.7349 1.4253 17 6 -1.1959 2.8883 2.0139 18 8 -1.3716 2.4924 3.1489 19 6 -2.3047 3.5417 1.2764 20 6 -3.6246 3.7790 1.7514 21 6 -4.2389 4.3918 0.7131 22 6 -5.6668 4.8719 0.6686 23 7 -5.7316 6.2561 1.1439 24 6 -6.2567 7.3023 0.4725 25 6 -6.1261 8.4004 1.2525 26 6 -5.4911 8.0138 2.4371 27 7 -5.2542 6.7286 2.3732 28 8 -3.3311 4.4889 -0.2678 29 7 -2.2651 4.0204 0.0578 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9423 -0.0436 -3.3026 36 1 3.1078 0.2443 2.1766 37 1 4.3386 1.2251 1.3450 38 1 3.6958 1.7507 2.9196 39 1 1.3221 2.6591 3.0571 40 1 0.8101 1.0757 2.4255 41 1 0.1469 3.0508 0.5189 42 1 -4.0397 3.5283 2.7164 43 1 -6.0350 4.8220 -0.3561 44 1 -6.2829 4.2391 1.3073 45 1 -6.7032 7.2688 -0.5103 46 1 -6.4507 9.3996 1.0024 47 1 -5.2401 8.6637 3.2624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156264591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:42 Heat of formation + Delta-G solvation = 149.699893 kcal Electronic energy + Delta-G solvation = -30801.941766 eV Core-core repulsion = 26606.046117 eV Total energy + Delta-G solvation = -4195.895649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -45.10349 -41.34784 -39.30120 -37.04379 -34.98504 -34.02186 -33.79298 -32.16737 -31.38376 -30.20720 -30.17110 -28.45478 -27.02735 -26.47712 -24.01212 -23.62057 -22.72835 -21.79816 -21.37372 -21.31932 -19.66442 -19.09333 -18.12908 -17.81228 -17.05312 -16.96415 -16.61253 -15.81332 -15.43852 -15.33787 -14.73092 -14.55125 -14.29559 -13.93741 -13.89698 -13.66417 -13.49264 -13.10978 -12.96179 -12.66214 -12.58181 -12.47954 -12.23182 -11.91081 -11.53684 -11.48099 -11.13273 -10.91662 -10.79313 -10.72711 -10.63294 -10.38051 -10.29830 -9.93781 -9.83732 -9.78603 -9.72581 -9.63952 -9.29792 -8.91429 -8.57592 -8.23943 -7.02856 -5.85287 -3.05955 1.03191 1.52746 1.64629 2.39341 2.61903 2.74129 3.32842 3.39269 3.47377 3.47784 3.49393 4.04333 4.21122 4.37817 4.47373 4.53574 4.74315 4.84893 4.95498 5.20141 5.23114 5.29794 5.37378 5.39800 5.49492 5.51617 5.74088 5.80280 5.88074 6.03430 6.09415 6.25418 6.29990 6.36133 6.61145 6.65045 6.68027 6.80592 6.91604 6.97778 7.10300 7.20507 7.42620 7.67642 7.80516 7.83744 8.10837 8.12374 8.29405 8.50075 9.19984 9.83585 10.28507 11.18357 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002790 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.746756 B =10032.262547 C =11125.306786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.594 5.594 4 C -0.264 4.264 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.880 5.880 8 Si 0.881 3.119 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.069 0.931 14 C -0.157 4.157 15 C 0.103 3.897 16 N -0.681 5.681 17 C 0.592 3.408 18 O -0.542 6.542 19 C -0.025 4.025 20 C -0.134 4.134 21 C -0.080 4.080 22 C 0.226 3.774 23 N -0.378 5.378 24 C 0.058 3.942 25 C -0.273 4.273 26 C 0.046 3.954 27 N -0.286 5.286 28 O 0.133 5.867 29 N -0.306 5.306 30 H 0.014 0.986 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.419 0.581 42 H 0.181 0.819 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.177 0.823 46 H 0.148 0.852 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 10.595 6.557 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 N -0.316 5.316 4 C -0.392 4.392 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.524 5.524 8 Si 0.711 3.289 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.087 0.913 14 C -0.217 4.217 15 C -0.023 4.023 16 N -0.332 5.332 17 C 0.375 3.625 18 O -0.419 6.419 19 C -0.184 4.184 20 C -0.157 4.157 21 C -0.143 4.143 22 C 0.103 3.897 23 N -0.161 5.161 24 C -0.087 4.087 25 C -0.302 4.302 26 C -0.141 4.141 27 N -0.107 5.107 28 O 0.052 5.948 29 N -0.002 5.002 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.257 0.743 42 H 0.198 0.802 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.194 0.806 46 H 0.166 0.834 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.326 9.065 6.847 17.511 hybrid contribution -0.279 0.913 -1.116 1.468 sum -13.605 9.978 5.731 17.818 Atomic orbital electron populations 1.22421 0.99275 0.97974 1.01240 1.20907 0.92397 0.84518 0.98132 1.44261 1.75641 1.11227 1.00461 1.19197 1.41866 0.94815 0.83279 0.90659 1.24685 0.98613 0.98233 0.97197 1.70289 1.30307 1.26678 1.25133 0.86605 0.81191 0.78009 0.83115 1.21695 1.22170 1.20794 1.20560 0.91049 0.96610 0.86624 0.91298 1.22174 0.99629 1.00588 0.99266 1.22156 0.87956 0.97390 0.94777 1.45796 1.09898 1.58066 1.19410 1.16821 0.81401 0.79146 0.85179 1.90748 1.82427 1.51088 1.17614 1.23650 0.97268 1.05131 0.92321 1.22430 0.91928 1.00464 1.00874 1.24116 0.95150 1.05396 0.89662 1.19880 0.87973 0.78992 1.02813 1.48718 1.46553 1.07308 1.13559 1.22646 0.99634 0.87359 0.99062 1.21552 1.12412 0.99827 0.96444 1.23969 0.98282 0.92754 0.99074 1.77478 1.20607 1.12534 1.00036 1.84829 1.14535 1.57994 1.37401 1.74321 1.01799 1.09442 1.14684 0.96700 0.96418 0.89412 0.89708 0.97474 0.93773 0.92903 0.92134 0.93574 0.92365 0.91565 0.74350 0.80155 0.85862 0.86076 0.80600 0.83418 0.79998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.27 37.16 0.34 -3.16 16 2 C 0.17 3.87 5.01 -4.04 -0.02 3.85 16 3 N -0.59 -13.59 1.92 -165.65 -0.32 -13.91 16 4 C -0.26 -6.71 9.38 -15.06 -0.14 -6.85 16 5 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 6 C 0.01 0.29 4.97 -17.43 -0.09 0.20 16 7 N -0.88 -23.79 8.40 55.49 0.47 -23.32 16 8 Si 0.88 21.01 29.65 -169.99 -5.04 15.97 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.16 3.07 2.87 -67.93 -0.19 2.88 16 13 H 0.07 1.31 7.78 -51.93 -0.40 0.91 16 14 C -0.16 -2.61 9.18 37.16 0.34 -2.27 16 15 C 0.10 1.91 4.32 -4.04 -0.02 1.89 16 16 N -0.68 -13.38 3.99 -61.10 -0.24 -13.63 16 17 C 0.59 11.61 7.60 -12.11 -0.09 11.52 16 18 O -0.54 -11.50 16.95 5.37 0.09 -11.41 16 19 C -0.02 -0.43 7.19 -82.53 -0.59 -1.03 16 20 C -0.13 -1.88 10.92 -39.08 -0.43 -2.31 16 21 C -0.08 -0.94 6.91 -35.35 -0.24 -1.18 16 22 C 0.23 1.63 7.07 -5.20 -0.04 1.60 16 23 N -0.38 -3.53 3.67 -62.55 -0.23 -3.76 16 24 C 0.06 0.43 11.45 -17.22 -0.20 0.23 16 25 C -0.27 -2.17 10.80 -40.01 -0.43 -2.60 16 26 C 0.05 0.44 12.02 -17.37 -0.21 0.23 16 27 N -0.29 -3.38 12.41 30.62 0.38 -3.00 16 28 O 0.13 1.94 11.18 17.26 0.19 2.13 16 29 N -0.31 -5.40 11.84 33.30 0.39 -5.00 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.39 4.84 -51.93 -0.25 0.14 16 32 H 0.09 2.32 6.30 -51.93 -0.33 1.99 16 33 H 0.08 2.23 5.84 -51.93 -0.30 1.93 16 34 H 0.01 0.15 6.43 -51.93 -0.33 -0.18 16 35 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 41 H 0.42 8.84 7.65 -40.82 -0.31 8.53 16 42 H 0.18 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.12 0.46 8.07 -51.93 -0.42 0.05 16 44 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 389.85 15.07 5.87 5.87 Total: -1.00 -32.36 389.85 -6.85 -39.20 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.41 Total: 7.85 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.01 Total: 3.00 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.45 Total: -62.62 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.28 Total: -9.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.04 Total: 15.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.36 -6.85 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156264591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.904 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds