Wall clock time and date at job start Wed Apr 1 2020 04:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47419 * 2 1 4 4 C 1.36941 * 119.99909 * 274.04294 * 3 2 1 5 5 H 1.07999 * 120.00027 * 174.70890 * 4 3 2 6 6 C 1.38817 * 119.99752 * 354.70173 * 4 3 2 7 7 N 1.31623 * 119.99850 * 31.38809 * 6 4 3 8 8 Si 1.86797 * 119.99974 * 211.38803 * 6 4 3 9 9 H 1.48496 * 109.47233 * 84.99802 * 8 6 4 10 10 H 1.48500 * 109.47106 * 204.99916 * 8 6 4 11 11 H 1.48500 * 109.46844 * 324.99752 * 8 6 4 12 12 C 1.46497 * 120.00244 * 94.03684 * 3 2 1 13 13 H 1.08997 * 109.47471 * 180.02562 * 12 3 2 14 14 C 1.53007 * 109.46709 * 59.99942 * 12 3 2 15 15 C 1.52998 * 109.47143 * 300.00457 * 12 3 2 16 16 N 1.46497 * 109.47360 * 304.99696 * 15 12 3 17 17 C 1.34770 * 120.00449 * 179.97438 * 16 15 12 18 18 O 1.21490 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.48331 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.42273 * 126.94135 * 180.02562 * 19 17 16 21 21 C 1.35309 * 103.92359 * 180.02562 * 20 19 17 22 22 C 1.50703 * 126.66305 * 180.02562 * 21 20 19 23 23 N 1.46493 * 109.47169 * 90.00182 * 22 21 20 24 24 C 1.34948 * 126.03826 * 124.71576 * 23 22 21 25 25 C 1.35322 * 107.74542 * 179.83841 * 24 23 22 26 26 C 1.39858 * 107.92073 * 0.42284 * 25 24 23 27 27 N 1.30841 * 108.20376 * 359.73598 * 26 25 24 28 28 O 1.34009 * 106.67257 * 0.02562 * 21 20 19 29 29 N 1.20912 * 111.84232 * 359.70696 * 28 21 20 30 30 H 1.09001 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47197 * 300.00588 * 1 2 3 32 32 H 1.09004 * 109.47248 * 59.99680 * 1 2 3 33 33 H 1.09004 * 109.47057 * 240.00174 * 2 1 3 34 34 H 1.09006 * 109.47157 * 119.99789 * 2 1 3 35 35 H 0.97002 * 119.99285 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.47531 * 299.99905 * 14 12 3 37 37 H 1.09001 * 109.46793 * 60.00735 * 14 12 3 38 38 H 1.08998 * 109.46520 * 180.02562 * 14 12 3 39 39 H 1.08998 * 109.47163 * 184.99536 * 15 12 3 40 40 H 1.09005 * 109.47429 * 64.99733 * 15 12 3 41 41 H 0.97001 * 119.99684 * 0.02562 * 16 15 12 42 42 H 1.08009 * 128.03664 * 0.02562 * 20 19 17 43 43 H 1.09004 * 109.46628 * 210.00072 * 22 21 20 44 44 H 1.08995 * 109.47290 * 329.99666 * 22 21 20 45 45 H 1.08003 * 126.12934 * 359.97438 * 24 23 22 46 46 H 1.08000 * 126.03477 * 180.15816 * 25 24 23 47 47 H 1.08003 * 125.90002 * 179.76389 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4166 -2.4608 8 14 2.9304 1.8985 -3.9039 9 1 4.2410 1.2003 -3.9088 10 1 2.1678 1.5281 -5.1231 11 1 3.1517 3.3668 -3.8855 12 6 2.3468 2.0421 1.2655 13 1 2.6904 3.0572 1.0669 14 6 3.4518 1.2593 1.9779 15 6 1.1021 2.0902 2.1538 16 7 0.0068 2.7349 1.4253 17 6 -1.1959 2.8883 2.0139 18 8 -1.3716 2.4924 3.1489 19 6 -2.3047 3.5417 1.2764 20 6 -3.6246 3.7790 1.7514 21 6 -4.2389 4.3918 0.7131 22 6 -5.6668 4.8719 0.6686 23 7 -5.7316 6.2561 1.1439 24 6 -6.2567 7.3023 0.4725 25 6 -6.1261 8.4004 1.2525 26 6 -5.4911 8.0138 2.4371 27 7 -5.2542 6.7286 2.3732 28 8 -3.3311 4.4889 -0.2678 29 7 -2.2651 4.0204 0.0578 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9423 -0.0436 -3.3026 36 1 3.1078 0.2443 2.1766 37 1 4.3386 1.2251 1.3450 38 1 3.6958 1.7507 2.9196 39 1 1.3221 2.6591 3.0571 40 1 0.8101 1.0757 2.4255 41 1 0.1469 3.0508 0.5189 42 1 -4.0397 3.5283 2.7164 43 1 -6.0350 4.8220 -0.3561 44 1 -6.2829 4.2391 1.3073 45 1 -6.7032 7.2688 -0.5103 46 1 -6.4507 9.3996 1.0024 47 1 -5.2401 8.6637 3.2624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156264591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:38 Heat of formation + Delta-G solvation = 129.842927 kcal Electronic energy + Delta-G solvation = -30802.802829 eV Core-core repulsion = 26606.046117 eV Total energy + Delta-G solvation = -4196.756712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -46.31532 -41.95727 -40.85469 -38.74510 -35.84105 -35.63851 -35.05364 -33.79867 -32.34413 -32.02923 -30.83668 -30.29741 -27.92511 -27.73507 -25.74173 -25.15109 -23.91027 -23.54809 -22.15847 -21.90693 -21.10827 -20.64474 -19.14998 -18.97958 -18.80202 -17.98665 -17.80919 -17.29569 -17.04711 -16.35871 -16.27184 -15.70197 -15.66068 -15.22056 -14.98580 -14.72685 -14.54155 -14.38732 -14.23360 -14.18902 -13.81731 -13.67686 -13.60215 -13.24452 -13.22791 -12.82011 -12.63845 -12.59791 -12.49894 -12.43553 -12.14280 -11.67075 -11.63954 -11.56495 -11.49955 -11.43269 -11.19109 -10.82566 -10.42661 -10.24256 -10.11618 -9.51829 -8.92773 -7.84566 -5.04123 -0.07417 0.38957 0.99345 1.47424 1.53509 1.57133 1.73393 1.80123 1.95680 2.01287 2.04135 2.53986 2.83114 3.23766 3.32299 3.60494 3.68027 3.78891 3.95592 4.06307 4.09674 4.18924 4.32252 4.36557 4.39577 4.54203 4.61970 4.72103 4.73635 4.75422 4.76387 4.95219 4.95528 5.06736 5.20265 5.20655 5.22709 5.27384 5.32392 5.50271 5.66613 5.75123 5.84693 6.13108 6.13979 6.32116 6.33565 6.78759 6.85433 6.98463 7.22192 7.93873 8.35097 9.17722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002790 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.746756 B =10032.262547 C =11125.306786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.172 3.828 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.075 0.925 6 C -0.035 4.035 7 N -0.901 5.901 8 Si 0.936 3.064 9 H -0.294 1.294 10 H -0.304 1.304 11 H -0.278 1.278 12 C 0.158 3.842 13 H 0.071 0.929 14 C -0.147 4.147 15 C 0.109 3.891 16 N -0.685 5.685 17 C 0.589 3.411 18 O -0.563 6.563 19 C -0.053 4.053 20 C -0.147 4.147 21 C -0.052 4.052 22 C 0.222 3.778 23 N -0.386 5.386 24 C 0.064 3.936 25 C -0.287 4.287 26 C 0.034 3.966 27 N -0.339 5.339 28 O 0.141 5.859 29 N -0.338 5.338 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.244 0.756 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.411 0.589 42 H 0.191 0.809 43 H 0.167 0.833 44 H 0.145 0.855 45 H 0.217 0.783 46 H 0.168 0.832 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.881 11.832 6.600 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.047 3.953 3 N -0.323 5.323 4 C -0.389 4.389 5 H 0.093 0.907 6 C -0.231 4.231 7 N -0.547 5.547 8 Si 0.766 3.234 9 H -0.222 1.222 10 H -0.231 1.231 11 H -0.203 1.203 12 C 0.050 3.950 13 H 0.089 0.911 14 C -0.206 4.206 15 C -0.017 4.017 16 N -0.334 5.334 17 C 0.374 3.626 18 O -0.442 6.442 19 C -0.210 4.210 20 C -0.170 4.170 21 C -0.116 4.116 22 C 0.100 3.900 23 N -0.170 5.170 24 C -0.080 4.080 25 C -0.315 4.315 26 C -0.152 4.152 27 N -0.160 5.160 28 O 0.059 5.941 29 N -0.034 5.034 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.247 0.753 42 H 0.208 0.792 43 H 0.184 0.816 44 H 0.163 0.837 45 H 0.233 0.767 46 H 0.185 0.815 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.460 10.319 6.922 19.065 hybrid contribution -0.011 0.634 -1.100 1.269 sum -14.471 10.953 5.823 19.060 Atomic orbital electron populations 1.22205 0.99408 0.97773 0.99734 1.20715 0.92121 0.84925 0.97545 1.44357 1.75725 1.11002 1.01228 1.19389 1.40411 0.94871 0.84261 0.90724 1.25193 0.99543 0.99089 0.99248 1.70423 1.31364 1.27887 1.24987 0.85746 0.79516 0.77670 0.80461 1.22178 1.23105 1.20313 1.20771 0.91949 0.96842 0.85399 0.91116 1.22054 0.98056 1.00280 1.00259 1.22119 0.87338 0.97041 0.95162 1.45866 1.10400 1.58112 1.18998 1.17096 0.81741 0.78736 0.85047 1.90715 1.82877 1.52170 1.18483 1.23593 0.98067 1.06476 0.92891 1.22602 0.90801 1.01548 1.02069 1.24895 0.96209 1.02809 0.87720 1.20435 0.84873 0.78656 1.05988 1.48831 1.46827 1.08193 1.13177 1.23345 0.98202 0.86392 1.00093 1.21916 1.12433 1.01168 0.96027 1.24404 0.97959 0.92555 1.00252 1.77414 1.22780 1.13779 1.01993 1.84777 1.14345 1.57020 1.37987 1.74309 1.03406 1.10620 1.15017 0.96227 0.96083 0.92474 0.92564 0.95602 0.94578 0.93140 0.92705 0.90383 0.90526 0.92654 0.75267 0.79157 0.81566 0.83691 0.76668 0.81463 0.78649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 9.27 71.98 0.67 -5.59 16 2 C 0.17 8.09 5.01 86.38 0.43 8.52 16 3 N -0.60 -27.43 1.92 -678.00 -1.30 -28.73 16 4 C -0.26 -13.29 9.38 84.03 0.79 -12.50 16 5 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 6 C -0.03 -1.84 4.97 84.86 0.42 -1.41 16 7 N -0.90 -49.74 8.40 21.65 0.18 -49.56 16 8 Si 0.94 43.79 29.65 68.60 2.03 45.82 16 9 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.16 5.88 2.87 44.99 0.13 6.01 16 13 H 0.07 2.61 7.78 -2.39 -0.02 2.59 16 14 C -0.15 -4.59 9.18 71.98 0.66 -3.93 16 15 C 0.11 3.96 4.32 86.38 0.37 4.34 16 16 N -0.68 -27.18 3.99 -465.52 -1.86 -29.03 16 17 C 0.59 23.53 7.60 86.93 0.66 24.19 16 18 O -0.56 -24.18 16.95 -3.69 -0.06 -24.25 16 19 C -0.05 -1.89 7.19 42.96 0.31 -1.58 16 20 C -0.15 -4.07 10.92 22.60 0.25 -3.83 16 21 C -0.05 -1.15 6.91 25.01 0.17 -0.98 16 22 C 0.22 2.50 7.07 85.64 0.61 3.11 16 23 N -0.39 -6.25 3.67 -351.80 -1.29 -7.54 16 24 C 0.06 0.74 11.45 83.54 0.96 1.70 16 25 C -0.29 -3.90 10.80 21.99 0.24 -3.66 16 26 C 0.03 0.62 12.02 85.23 1.02 1.65 16 27 N -0.34 -7.65 12.41 -57.03 -0.71 -8.36 16 28 O 0.14 3.99 11.18 71.94 0.80 4.80 16 29 N -0.34 -12.06 11.84 -49.50 -0.59 -12.64 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.02 0.94 4.84 -2.39 -0.01 0.93 16 32 H 0.06 3.09 6.30 -2.39 -0.02 3.07 16 33 H 0.06 3.00 5.84 -2.38 -0.01 2.99 16 34 H 0.03 1.11 6.43 -2.38 -0.02 1.09 16 35 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.05 1.60 6.66 -2.39 -0.02 1.58 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.15 6.92 -2.38 -0.02 2.14 16 41 H 0.41 17.72 7.65 -92.71 -0.71 17.01 16 42 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 43 H 0.17 0.45 8.07 -2.38 -0.02 0.43 16 44 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 46 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -72.21 389.85 5.20 -67.01 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.30 Total: 26.46 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 7.69 Total: 16.02 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -5.56 Total: -135.87 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.74 Total: -19.45 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.21 5.20 -67.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156264591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.851 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds