Wall clock time and date at job start Wed Apr 1 2020 05:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45192 * 109.47043 * 2 1 4 4 C 1.34226 * 116.99866 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00427 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99930 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47112 * 179.97438 * 6 4 3 8 8 C 1.46503 * 120.00242 * 269.99783 * 7 6 4 9 9 C 1.50694 * 109.47037 * 270.00384 * 8 7 6 10 10 H 1.08001 * 120.00297 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99461 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00222 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47194 * 59.99359 * 13 11 9 15 15 H 1.48496 * 109.46836 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47022 * 299.99281 * 13 11 9 17 17 C 1.38545 * 119.99854 * 89.99940 * 7 6 4 18 18 N 1.32740 * 118.91084 * 179.97438 * 17 7 6 19 19 C 1.32162 * 121.25983 * 180.02562 * 18 17 7 20 20 C 1.39593 * 118.71999 * 0.02562 * 19 18 17 21 21 N 1.35653 * 134.62512 * 180.02562 * 20 19 18 22 22 C 1.30082 * 109.46040 * 179.97438 * 21 20 19 23 23 N 1.36385 * 110.07053 * 359.97438 * 22 21 20 24 24 C 1.46496 * 126.26260 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47648 * 300.02563 * 24 23 22 26 26 C 1.53000 * 109.47382 * 60.02928 * 24 23 22 27 27 C 1.37216 * 107.46709 * 0.02562 * 23 22 21 28 28 N 1.32321 * 118.91203 * 359.97438 * 17 7 6 29 29 H 1.09000 * 109.47622 * 60.00374 * 1 2 3 30 30 H 1.09004 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47485 * 299.99909 * 1 2 3 32 32 H 1.09001 * 109.46651 * 239.99719 * 2 1 3 33 33 H 1.08998 * 109.46871 * 120.00153 * 2 1 3 34 34 H 1.09003 * 109.47411 * 59.99335 * 6 4 3 35 35 H 1.09005 * 109.47321 * 299.99281 * 6 4 3 36 36 H 1.08997 * 109.46753 * 29.99900 * 8 7 6 37 37 H 1.09003 * 109.47144 * 149.99881 * 8 7 6 38 38 H 0.97004 * 119.99681 * 180.02562 * 12 11 9 39 39 H 1.07996 * 120.63639 * 180.02562 * 19 18 17 40 40 H 1.08001 * 124.96609 * 180.26288 * 22 21 20 41 41 H 1.09007 * 109.47249 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47065 * 300.00176 * 25 24 23 43 43 H 1.08997 * 109.46928 * 59.99836 * 25 24 23 44 44 H 1.09004 * 109.47308 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47420 * 59.99210 * 26 24 23 46 46 H 1.08998 * 109.47558 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46657 * 299.99835 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1152 2.8230 1.2677 9 6 6.4403 4.2289 1.7021 10 1 6.1331 5.0667 1.0937 11 6 7.1308 4.4456 2.8757 12 7 7.5052 3.4253 3.6162 13 14 7.5344 6.1883 3.4138 14 1 6.2754 6.9557 3.5912 15 1 8.2757 6.1500 4.6999 16 1 8.3724 6.8445 2.3782 17 6 6.0755 2.8239 -1.2008 18 7 7.4008 2.7549 -1.1755 19 6 8.1071 2.7179 -2.2920 20 6 7.4328 2.7532 -3.5138 21 7 7.8163 2.7327 -4.8148 22 6 6.7641 2.7875 -5.5777 23 7 5.6353 2.8463 -4.8146 24 6 4.2581 2.9186 -5.3088 25 6 4.0869 4.1784 -6.1599 26 6 3.9560 1.6834 -6.1597 27 6 6.0257 2.8265 -3.4993 28 7 5.3932 2.8586 -2.3340 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5850 3.4698 0.8887 35 1 3.5845 3.4692 -0.8913 36 1 5.5000 2.3411 2.0276 37 1 7.0394 2.2599 1.1377 38 1 7.9906 3.5778 4.4421 39 1 9.1851 2.6614 -2.2597 40 1 6.7816 2.7821 -6.6576 41 1 3.5702 2.9547 -4.4639 42 1 4.3021 5.0584 -5.5537 43 1 4.7747 4.1423 -7.0047 44 1 3.0621 4.2324 -6.5272 45 1 4.0779 0.7858 -5.5534 46 1 2.9312 1.7369 -6.5270 47 1 4.6438 1.6473 -7.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:13 Heat of formation + Delta-G solvation = 31.970136 kcal Electronic energy + Delta-G solvation = -31197.312692 eV Core-core repulsion = 26996.311897 eV Total energy + Delta-G solvation = -4201.000794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.18955 -40.18402 -39.14018 -36.71474 -36.04899 -35.22730 -33.27283 -32.55038 -31.76589 -30.65086 -29.49554 -28.47421 -27.62746 -26.18097 -24.17738 -23.48649 -23.12633 -22.89949 -21.55775 -20.45451 -19.80574 -17.95003 -17.54495 -17.50396 -16.54670 -16.50289 -16.19255 -15.80531 -15.68491 -15.42957 -14.69912 -14.51478 -14.24155 -14.16133 -13.97384 -13.52548 -13.41325 -13.29207 -12.87933 -12.78674 -12.57915 -12.55841 -12.25650 -12.07490 -11.75422 -11.58764 -11.54051 -11.48054 -11.27356 -11.18708 -10.96548 -10.93838 -10.62970 -10.40648 -10.35242 -10.12957 -9.94110 -9.77754 -9.01262 -8.81580 -8.50178 -8.37863 -7.05828 -6.03751 -4.10505 1.22051 1.82966 2.37449 2.60588 2.75816 3.04732 3.32051 3.36807 3.39120 3.50191 4.30386 4.37897 4.40263 4.46386 4.48089 4.65711 4.81214 4.89566 4.91645 4.94077 5.07082 5.09475 5.15850 5.16440 5.25243 5.29264 5.31246 5.35431 5.52848 5.57871 5.66254 5.70388 5.71909 5.79068 5.81742 5.88310 6.09329 6.36204 6.44947 6.66712 6.94682 7.06088 7.39431 7.51661 7.64211 7.88573 7.91805 8.11708 8.18348 8.21152 8.82390 8.98130 9.53942 11.02725 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007314 B = 0.004425 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3827.256810 B = 6325.824017 C = 9126.281371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.444 3.556 5 O -0.497 6.497 6 C 0.146 3.854 7 N -0.542 5.542 8 C 0.261 3.739 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.606 3.394 18 N -0.525 5.525 19 C 0.262 3.738 20 C -0.130 4.130 21 N -0.458 5.458 22 C 0.236 3.764 23 N -0.480 5.480 24 C 0.135 3.865 25 C -0.161 4.161 26 C -0.161 4.161 27 C 0.329 3.671 28 N -0.597 5.597 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.033 0.967 37 H 0.056 0.944 38 H 0.264 0.736 39 H 0.172 0.828 40 H 0.211 0.789 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 -2.953 -17.783 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.284 3.716 5 O -0.382 6.382 6 C 0.018 3.982 7 N -0.254 5.254 8 C 0.143 3.857 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.249 3.751 18 N -0.244 5.244 19 C 0.082 3.918 20 C -0.254 4.254 21 N -0.177 5.177 22 C -0.051 4.051 23 N -0.177 5.177 24 C 0.033 3.967 25 C -0.219 4.219 26 C -0.219 4.219 27 C 0.084 3.916 28 N -0.330 5.330 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.189 0.811 40 H 0.227 0.773 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.657 -3.340 -16.751 20.680 hybrid contribution -0.195 0.699 -0.259 0.770 sum -11.852 -2.641 -17.010 20.899 Atomic orbital electron populations 1.21784 0.92917 1.02604 1.03399 1.22917 0.95017 0.81029 1.02319 1.86503 1.25185 1.31752 1.84639 1.24937 0.80183 0.94216 0.72249 1.90660 1.60273 1.42979 1.44332 1.20768 0.81318 0.89578 1.06508 1.46517 1.02840 1.72332 1.03756 1.19474 0.92533 0.97729 0.75984 1.21366 1.36823 0.92130 1.06419 0.92398 1.24889 0.95375 0.97195 0.96259 1.69931 1.38676 1.30091 1.14286 0.86567 0.78512 0.84532 0.77832 1.20295 1.21205 1.20194 1.18822 0.84751 0.86730 0.84747 1.68207 1.06616 1.20332 1.29281 1.22413 1.00080 0.85880 0.83416 1.20228 0.93067 1.18170 0.93944 1.70220 1.28385 1.18751 1.00311 1.24990 0.79367 1.02351 0.98414 1.45140 1.07943 1.61543 1.03055 1.21376 0.80446 0.96380 0.98544 1.22172 1.02940 0.96836 0.99941 1.22171 1.02639 0.97160 0.99938 1.18516 0.90809 0.96642 0.85661 1.66436 1.40658 1.30653 0.95263 0.91657 0.90604 0.91443 0.91774 0.91419 0.85711 0.86542 0.94882 0.92599 0.92590 0.81068 0.77274 0.87815 0.91727 0.91722 0.90525 0.91874 0.90526 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.60 10.22 -39.25 -0.40 -6.00 16 4 C 0.44 8.18 8.03 36.01 0.29 8.47 16 5 O -0.50 -10.86 16.18 -18.75 -0.30 -11.16 16 6 C 0.15 2.65 6.00 -5.19 -0.03 2.62 16 7 N -0.54 -12.12 2.05 -178.71 -0.37 -12.49 16 8 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 9 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.61 13.45 8.18 -322.51 -2.64 10.82 16 18 N -0.53 -11.81 9.06 -13.65 -0.12 -11.94 16 19 C 0.26 4.98 11.37 -16.90 -0.19 4.79 16 20 C -0.13 -2.38 7.29 -84.66 -0.62 -3.00 16 21 N -0.46 -7.31 11.28 -11.94 -0.13 -7.45 16 22 C 0.24 2.90 11.51 -89.48 -1.03 1.87 16 23 N -0.48 -6.44 2.65 -110.45 -0.29 -6.73 16 24 C 0.14 1.32 3.59 -67.93 -0.24 1.07 16 25 C -0.16 -1.17 9.25 37.16 0.34 -0.83 16 26 C -0.16 -1.20 9.25 37.16 0.34 -0.86 16 27 C 0.33 5.92 8.01 -155.86 -1.25 4.67 16 28 N -0.60 -11.87 9.12 -13.16 -0.12 -11.99 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.13 2.10 8.07 -51.93 -0.42 1.68 16 35 H 0.12 1.91 7.32 -51.93 -0.38 1.53 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.06 1.60 7.32 -51.93 -0.38 1.22 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 40 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.39 7.94 -51.93 -0.41 -0.03 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.39 7.95 -51.93 -0.41 -0.02 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -35.16 403.89 -11.84 -47.00 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.04 Total: 0.07 kcal Atomic # 6 Polarization: 28.24 SS G_CDS: -4.86 Total: 23.39 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -0.30 Total: -75.73 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.70 Total: -17.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.16 -11.84 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.969 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds