Wall clock time and date at job start Wed Apr 1 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45192 * 109.47043 * 2 1 4 4 C 1.34226 * 116.99866 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00427 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99930 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47112 * 179.97438 * 6 4 3 8 8 C 1.46503 * 120.00242 * 269.99783 * 7 6 4 9 9 C 1.50694 * 109.47037 * 270.00384 * 8 7 6 10 10 H 1.08001 * 120.00297 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99461 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00222 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47194 * 59.99359 * 13 11 9 15 15 H 1.48496 * 109.46836 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47022 * 299.99281 * 13 11 9 17 17 C 1.38545 * 119.99854 * 89.99940 * 7 6 4 18 18 N 1.32740 * 118.91084 * 179.97438 * 17 7 6 19 19 C 1.32162 * 121.25983 * 180.02562 * 18 17 7 20 20 C 1.39593 * 118.71999 * 0.02562 * 19 18 17 21 21 N 1.35653 * 134.62512 * 180.02562 * 20 19 18 22 22 C 1.30082 * 109.46040 * 179.97438 * 21 20 19 23 23 N 1.36385 * 110.07053 * 359.97438 * 22 21 20 24 24 C 1.46496 * 126.26260 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47648 * 300.02563 * 24 23 22 26 26 C 1.53000 * 109.47382 * 60.02928 * 24 23 22 27 27 C 1.37216 * 107.46709 * 0.02562 * 23 22 21 28 28 N 1.32321 * 118.91203 * 359.97438 * 17 7 6 29 29 H 1.09000 * 109.47622 * 60.00374 * 1 2 3 30 30 H 1.09004 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47485 * 299.99909 * 1 2 3 32 32 H 1.09001 * 109.46651 * 239.99719 * 2 1 3 33 33 H 1.08998 * 109.46871 * 120.00153 * 2 1 3 34 34 H 1.09003 * 109.47411 * 59.99335 * 6 4 3 35 35 H 1.09005 * 109.47321 * 299.99281 * 6 4 3 36 36 H 1.08997 * 109.46753 * 29.99900 * 8 7 6 37 37 H 1.09003 * 109.47144 * 149.99881 * 8 7 6 38 38 H 0.97004 * 119.99681 * 180.02562 * 12 11 9 39 39 H 1.07996 * 120.63639 * 180.02562 * 19 18 17 40 40 H 1.08001 * 124.96609 * 180.26288 * 22 21 20 41 41 H 1.09007 * 109.47249 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47065 * 300.00176 * 25 24 23 43 43 H 1.08997 * 109.46928 * 59.99836 * 25 24 23 44 44 H 1.09004 * 109.47308 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47420 * 59.99210 * 26 24 23 46 46 H 1.08998 * 109.47558 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46657 * 299.99835 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1152 2.8230 1.2677 9 6 6.4403 4.2289 1.7021 10 1 6.1331 5.0667 1.0937 11 6 7.1308 4.4456 2.8757 12 7 7.5052 3.4253 3.6162 13 14 7.5344 6.1883 3.4138 14 1 6.2754 6.9557 3.5912 15 1 8.2757 6.1500 4.6999 16 1 8.3724 6.8445 2.3782 17 6 6.0755 2.8239 -1.2008 18 7 7.4008 2.7549 -1.1755 19 6 8.1071 2.7179 -2.2920 20 6 7.4328 2.7532 -3.5138 21 7 7.8163 2.7327 -4.8148 22 6 6.7641 2.7875 -5.5777 23 7 5.6353 2.8463 -4.8146 24 6 4.2581 2.9186 -5.3088 25 6 4.0869 4.1784 -6.1599 26 6 3.9560 1.6834 -6.1597 27 6 6.0257 2.8265 -3.4993 28 7 5.3932 2.8586 -2.3340 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5850 3.4698 0.8887 35 1 3.5845 3.4692 -0.8913 36 1 5.5000 2.3411 2.0276 37 1 7.0394 2.2599 1.1377 38 1 7.9906 3.5778 4.4421 39 1 9.1851 2.6614 -2.2597 40 1 6.7816 2.7821 -6.6576 41 1 3.5702 2.9547 -4.4639 42 1 4.3021 5.0584 -5.5537 43 1 4.7747 4.1423 -7.0047 44 1 3.0621 4.2324 -6.5272 45 1 4.0779 0.7858 -5.5534 46 1 2.9312 1.7369 -6.5270 47 1 4.6438 1.6473 -7.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157162081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:12 Heat of formation + Delta-G solvation = 14.402188 kcal Electronic energy + Delta-G solvation = -31198.074495 eV Core-core repulsion = 26996.311897 eV Total energy + Delta-G solvation = -4201.762598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.46431 -41.62504 -40.56046 -38.10348 -37.22900 -36.64602 -34.89437 -34.41164 -32.77122 -31.74716 -30.88457 -30.26170 -28.19273 -27.87043 -25.53367 -25.18911 -24.28938 -23.92565 -23.01454 -21.90993 -20.96798 -19.24080 -19.03421 -18.93630 -18.44869 -17.83350 -17.53083 -17.18296 -16.94495 -16.91274 -16.35683 -15.64258 -15.37175 -15.33356 -15.20398 -14.94065 -14.76745 -14.47331 -14.24906 -13.83315 -13.65191 -13.40815 -13.39416 -13.23796 -13.10324 -12.92272 -12.75588 -12.64935 -12.60975 -12.55619 -12.53351 -12.17225 -12.15369 -12.06759 -12.00117 -11.60150 -11.57156 -11.26530 -10.59420 -10.50418 -10.19291 -9.93771 -8.65729 -8.12285 -6.30881 -0.16981 0.37295 1.12876 1.16219 1.41456 1.45024 1.47405 1.53191 1.82798 2.05103 2.42872 2.95746 3.09347 3.14795 3.26440 3.50250 3.55025 3.75137 3.85726 3.94793 3.96543 4.03602 4.07167 4.11926 4.14465 4.29610 4.33716 4.53632 4.69041 4.73925 4.81126 4.82391 4.84053 4.90488 4.93036 5.01630 5.10201 5.15767 5.24530 5.27990 5.39077 5.41247 5.63151 5.78606 5.93103 6.08361 6.17185 6.45781 6.71147 6.74421 6.79299 7.31499 7.41675 8.90615 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007314 B = 0.004425 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3827.256810 B = 6325.824017 C = 9126.281371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.451 3.549 5 O -0.538 6.538 6 C 0.146 3.854 7 N -0.557 5.557 8 C 0.287 3.713 9 C -0.534 4.534 10 H 0.055 0.945 11 C 0.015 3.985 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.277 1.277 17 C 0.583 3.417 18 N -0.568 5.568 19 C 0.246 3.754 20 C -0.132 4.132 21 N -0.490 5.490 22 C 0.271 3.729 23 N -0.473 5.473 24 C 0.127 3.873 25 C -0.153 4.153 26 C -0.154 4.154 27 C 0.303 3.697 28 N -0.591 5.591 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.011 0.989 37 H 0.018 0.982 38 H 0.267 0.733 39 H 0.193 0.807 40 H 0.270 0.730 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.037 0.963 46 H 0.101 0.899 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 -1.832 -21.210 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.293 3.707 5 O -0.427 6.427 6 C 0.020 3.980 7 N -0.271 5.271 8 C 0.166 3.834 9 C -0.573 4.573 10 H 0.073 0.927 11 C -0.184 4.184 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.202 1.202 17 C 0.226 3.774 18 N -0.289 5.289 19 C 0.069 3.931 20 C -0.255 4.255 21 N -0.209 5.209 22 C -0.016 4.016 23 N -0.169 5.169 24 C 0.026 3.974 25 C -0.211 4.211 26 C -0.212 4.212 27 C 0.056 3.944 28 N -0.324 5.324 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.210 0.790 40 H 0.285 0.715 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.057 0.943 46 H 0.120 0.880 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.510 -2.212 -20.256 24.448 hybrid contribution 0.290 0.263 0.518 0.649 sum -13.221 -1.949 -19.738 23.836 Atomic orbital electron populations 1.21805 0.89423 1.04471 1.04014 1.23285 0.97651 0.79413 1.01871 1.86497 1.23217 1.33639 1.83824 1.24909 0.80903 0.93737 0.71141 1.90640 1.61442 1.44154 1.46477 1.20931 0.79389 0.89896 1.07799 1.46223 1.04076 1.73988 1.02828 1.18814 0.90886 0.96439 0.77242 1.21552 1.36753 0.92487 1.06462 0.92689 1.25748 0.95078 1.01321 0.96252 1.70062 1.39432 1.32354 1.14749 0.85500 0.78684 0.79481 0.77293 1.18788 1.20611 1.20233 1.18901 0.84957 0.88270 0.85278 1.68144 1.07340 1.22167 1.31239 1.22751 1.01007 0.85922 0.83394 1.20383 0.93310 1.17036 0.94810 1.70269 1.29947 1.21495 0.99178 1.26243 0.77869 0.97197 1.00268 1.45595 1.09955 1.60130 1.01177 1.21736 0.77881 0.99149 0.98638 1.22155 1.05183 0.94115 0.99619 1.22159 1.04898 0.94474 0.99632 1.18919 0.91259 0.97329 0.86854 1.66399 1.40431 1.30102 0.95431 0.90748 0.88071 0.91074 0.92049 0.92229 0.84629 0.84751 0.97057 0.96421 0.92445 0.79014 0.71463 0.89930 0.93815 0.89431 0.88043 0.94335 0.88004 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.30 6.19 71.98 0.45 1.74 16 3 O -0.36 -11.04 10.22 -51.38 -0.53 -11.56 16 4 C 0.45 17.31 8.03 71.24 0.57 17.88 16 5 O -0.54 -24.89 16.18 21.97 0.36 -24.54 16 6 C 0.15 5.55 6.00 85.63 0.51 6.06 16 7 N -0.56 -26.42 2.05 -719.32 -1.47 -27.89 16 8 C 0.29 15.88 5.16 85.63 0.44 16.32 16 9 C -0.53 -30.31 9.39 25.60 0.24 -30.07 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.02 0.87 5.46 84.66 0.46 1.34 16 12 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 13 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 C 0.58 27.32 8.18 261.38 2.14 29.46 16 18 N -0.57 -27.23 9.06 -197.11 -1.79 -29.01 16 19 C 0.25 9.81 11.37 84.97 0.97 10.77 16 20 C -0.13 -4.87 7.29 39.53 0.29 -4.58 16 21 N -0.49 -14.76 11.28 -191.67 -2.16 -16.92 16 22 C 0.27 5.67 11.51 179.95 2.07 7.74 16 23 N -0.47 -11.67 2.65 -503.36 -1.33 -13.00 16 24 C 0.13 2.12 3.59 44.99 0.16 2.28 16 25 C -0.15 -1.62 9.25 71.98 0.67 -0.95 16 26 C -0.15 -1.72 9.25 71.98 0.67 -1.05 16 27 C 0.30 10.90 8.01 134.03 1.07 11.97 16 28 N -0.59 -24.26 9.12 -195.56 -1.78 -26.04 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 34 H 0.14 4.74 8.07 -2.39 -0.02 4.72 16 35 H 0.13 4.53 7.32 -2.38 -0.02 4.51 16 36 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 37 H 0.02 1.10 7.32 -2.39 -0.02 1.08 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 39 H 0.19 6.36 8.06 -2.91 -0.02 6.34 16 40 H 0.27 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.08 1.76 8.08 -2.38 -0.02 1.74 16 42 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.55 7.94 -2.39 -0.02 0.53 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 0.59 7.95 -2.39 -0.02 0.57 16 Total: -1.00 -82.54 403.89 6.02 -76.51 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.98 Total: 13.95 kcal Atomic # 6 Polarization: 55.98 SS G_CDS: 11.44 Total: 67.43 kcal Atomic # 7 Polarization: -160.07 SS G_CDS: -8.25 Total: -168.32 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.17 Total: -36.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.54 6.02 -76.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.915 kcal (2) G-P(sol) polarization free energy of solvation -82.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds