Wall clock time and date at job start Wed Apr 1 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99901 * 2 1 4 4 C 1.53001 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47006 * 64.99648 * 4 3 2 6 6 C 1.36824 * 120.00436 * 273.42684 * 5 4 3 7 7 H 1.08006 * 120.00113 * 125.20724 * 6 5 4 8 8 C 1.39037 * 120.00186 * 305.21229 * 6 5 4 9 9 N 1.31373 * 120.00183 * 349.42110 * 8 6 5 10 10 Si 1.86806 * 120.00163 * 169.42463 * 8 6 5 11 11 H 1.48500 * 109.47002 * 59.99682 * 10 8 6 12 12 H 1.48491 * 109.47082 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46770 * 300.00239 * 10 8 6 14 14 C 1.34776 * 119.99695 * 93.43706 * 5 4 3 15 15 O 1.21728 * 120.00104 * 357.75368 * 14 5 4 16 16 C 1.46695 * 120.00000 * 177.76411 * 14 5 4 17 17 C 1.36231 * 125.50931 * 353.48982 * 16 14 5 18 18 C 1.40977 * 107.55523 * 179.97438 * 17 16 14 19 19 C 1.41054 * 107.18555 * 0.02562 * 18 17 16 20 20 N 1.33133 * 118.65499 * 179.97438 * 19 18 17 21 21 C 1.31605 * 120.78032 * 359.97438 * 20 19 18 22 22 N 1.32036 * 122.72760 * 0.02562 * 21 20 19 23 23 C 1.32935 * 121.12800 * 0.02562 * 22 21 20 24 24 N 1.38004 * 120.82434 * 179.97438 * 23 22 21 25 25 C 1.46900 * 111.00148 * 0.02562 * 24 23 22 26 26 C 1.46897 * 111.00140 * 123.97275 * 24 23 22 27 27 N 1.36649 * 107.39635 * 359.97438 * 19 18 17 28 28 C 1.46496 * 125.55816 * 179.97438 * 27 19 18 29 29 H 1.09002 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47245 * 300.00411 * 1 2 3 31 31 H 1.09005 * 109.46939 * 60.00239 * 1 2 3 32 32 H 1.08997 * 109.46869 * 59.99922 * 3 2 1 33 33 H 1.08996 * 109.46680 * 299.99769 * 3 2 1 34 34 H 1.09007 * 109.47298 * 305.00344 * 4 3 2 35 35 H 1.08997 * 109.47191 * 185.00294 * 4 3 2 36 36 H 0.96997 * 119.99967 * 179.97438 * 9 8 6 37 37 H 1.07997 * 126.22098 * 0.24890 * 17 16 14 38 38 H 1.07998 * 118.63395 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.46982 * 60.00032 * 25 24 23 40 40 H 1.08994 * 109.46890 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.47146 * 300.00589 * 25 24 23 42 42 H 1.08999 * 109.47271 * 59.99737 * 26 24 23 43 43 H 1.08994 * 109.47318 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47318 * 299.99948 * 26 24 23 45 45 H 1.09004 * 109.46901 * 87.59249 * 28 27 19 46 46 H 1.09004 * 109.47257 * 207.58731 * 28 27 19 47 47 H 1.08994 * 109.47289 * 327.59211 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0305 -0.7991 -1.3567 7 1 3.5049 -1.2999 -2.1563 8 6 4.7617 -1.5397 -0.4347 9 7 5.5653 -0.9309 0.4077 10 14 4.6017 -3.4004 -0.3938 11 1 5.0080 -3.9612 -1.7075 12 1 5.4783 -3.9493 0.6717 13 1 3.1911 -3.7698 -0.1128 14 6 4.3297 1.3356 -2.2979 15 8 4.2431 2.5471 -2.2177 16 6 4.8181 0.7154 -3.5343 17 6 5.0778 -0.6109 -3.7053 18 6 5.5253 -0.7893 -5.0302 19 6 5.5239 0.4802 -5.6450 20 7 5.9123 0.5750 -6.9149 21 6 6.2906 -0.4927 -7.5850 22 7 6.3085 -1.7007 -7.0521 23 6 5.9383 -1.9011 -5.7912 24 7 5.9589 -3.1665 -5.2408 25 6 6.4243 -4.1586 -6.2191 26 6 6.7836 -3.1986 -4.0256 27 7 5.0894 1.3835 -4.7163 28 6 4.9366 2.8239 -4.9353 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1765 0.0903 36 1 6.0751 -1.4475 1.0511 37 1 4.9581 -1.3856 -2.9624 38 1 6.5993 -0.3759 -8.6133 39 1 7.4326 -3.9026 -6.5446 40 1 6.4305 -5.1469 -5.7594 41 1 5.7549 -4.1624 -7.0793 42 1 6.3754 -2.5046 -3.2910 43 1 6.7822 -4.2071 -3.6121 44 1 7.8049 -2.9079 -4.2718 45 1 3.9441 3.0269 -5.3378 46 1 5.0593 3.3504 -3.9887 47 1 5.6923 3.1662 -5.6421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160823614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:20 Heat of formation + Delta-G solvation = 48.425060 kcal Electronic energy + Delta-G solvation = -32395.862984 eV Core-core repulsion = 28195.575728 eV Total energy + Delta-G solvation = -4200.287255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.64051 -39.30611 -38.17078 -37.12433 -36.75739 -34.99592 -32.61259 -31.94759 -31.78586 -30.02991 -28.46595 -27.78319 -26.34683 -25.78492 -25.48941 -24.68510 -23.56083 -21.83390 -21.72234 -20.24923 -19.34521 -18.05688 -17.32794 -16.68048 -15.99420 -15.79013 -15.51033 -15.42261 -15.24362 -14.88632 -14.68686 -14.48066 -14.41398 -14.09479 -13.88559 -13.52991 -13.38673 -13.21900 -12.93965 -12.74601 -12.22553 -12.13522 -12.05519 -11.75825 -11.73941 -11.47820 -11.27759 -11.19434 -11.15088 -11.00710 -10.86960 -10.64195 -10.45366 -10.36860 -10.15171 -9.19426 -9.05628 -8.84128 -8.80107 -8.69260 -8.35909 -7.50294 -7.22381 -6.46185 -4.29459 1.07496 1.78491 2.77996 2.84138 3.13381 3.18363 3.23710 3.67229 4.01874 4.26361 4.33425 4.42833 4.52218 4.62808 4.73299 4.89347 5.18426 5.22071 5.41155 5.46615 5.48811 5.59902 5.64561 5.67408 5.69959 5.71224 5.80620 5.91864 5.98535 6.00316 6.04808 6.07228 6.12273 6.15136 6.20392 6.34126 6.54680 6.62715 6.83350 6.92738 7.03484 7.28478 7.33041 7.43252 7.50842 7.73985 7.75331 7.91172 8.23222 8.61767 8.93395 9.24662 9.71194 10.56351 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.005061 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.857284 B = 5531.525048 C = 7283.721550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.053 3.947 4 C 0.123 3.877 5 N -0.406 5.406 6 C -0.332 4.332 7 H 0.093 0.907 8 C 0.057 3.943 9 N -0.856 5.856 10 Si 0.902 3.098 11 H -0.259 1.259 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.538 3.462 15 O -0.609 6.609 16 C 0.052 3.948 17 C -0.106 4.106 18 C -0.224 4.224 19 C 0.316 3.684 20 N -0.551 5.551 21 C 0.326 3.674 22 N -0.590 5.590 23 C 0.410 3.590 24 N -0.474 5.474 25 C 0.036 3.964 26 C 0.021 3.979 27 N -0.436 5.436 28 C 0.078 3.922 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.273 0.727 37 H 0.198 0.802 38 H 0.192 0.808 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -2.585 -5.679 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C -0.025 4.025 4 C 0.000 4.000 5 N -0.121 5.121 6 C -0.460 4.460 7 H 0.110 0.890 8 C -0.151 4.151 9 N -0.490 5.490 10 Si 0.727 3.273 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.328 3.672 15 O -0.497 6.497 16 C -0.055 4.055 17 C -0.132 4.132 18 C -0.237 4.237 19 C 0.076 3.924 20 N -0.273 5.273 21 C 0.034 3.966 22 N -0.314 5.314 23 C 0.164 3.836 24 N -0.190 5.190 25 C -0.111 4.111 26 C -0.124 4.124 27 N -0.120 5.120 28 C -0.063 4.063 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.214 0.786 38 H 0.208 0.792 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.128 0.872 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.928 -1.814 -6.116 6.447 hybrid contribution 0.021 -0.546 0.581 0.798 sum -0.907 -2.360 -5.535 6.086 Atomic orbital electron populations 1.22650 0.83338 1.01855 0.98806 1.88160 1.17404 1.27357 1.95024 1.22996 0.96081 0.84623 0.98769 1.21425 0.89630 0.99007 0.89939 1.42785 1.54075 1.05970 1.09311 1.19286 1.30486 0.80311 1.15935 0.88960 1.25536 0.93611 1.00118 0.95865 1.69829 1.23038 1.37035 1.19095 0.86393 0.79090 0.82862 0.78920 1.18360 1.20878 1.19272 1.17274 0.80481 0.85701 0.83748 1.90606 1.60974 1.13991 1.84137 1.20143 1.07100 0.91432 0.86864 1.22467 1.00072 0.96630 0.93995 1.19276 1.12599 0.93300 0.98495 1.18237 0.97734 0.87647 0.88778 1.67214 1.19247 1.34983 1.05888 1.24173 0.92013 0.81606 0.98809 1.68269 1.24153 1.26406 1.12615 1.19547 0.87375 0.88262 0.88433 1.58517 1.50256 1.02318 1.07938 1.22276 1.00145 0.93602 0.95050 1.22752 0.94606 1.04544 0.90517 1.43707 1.53078 1.07202 1.08001 1.22154 1.01949 0.77252 1.04902 0.90325 0.95157 0.95006 0.94039 0.94118 0.88184 0.90477 0.91699 0.78575 0.79192 0.93688 0.91236 0.90438 0.88463 0.90004 0.94277 0.91749 0.87179 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -7.18 10.01 -35.23 -0.35 -7.53 16 3 C 0.05 1.01 6.28 37.16 0.23 1.25 16 4 C 0.12 2.69 5.52 -4.04 -0.02 2.67 16 5 N -0.41 -9.54 2.36 -116.29 -0.27 -9.82 16 6 C -0.33 -7.77 5.25 -15.03 -0.08 -7.85 16 7 H 0.09 2.18 6.38 -52.48 -0.33 1.85 16 8 C 0.06 1.32 4.97 -17.45 -0.09 1.23 16 9 N -0.86 -20.92 12.07 55.50 0.67 -20.25 16 10 Si 0.90 18.01 29.54 -169.99 -5.02 12.99 16 11 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 14 C 0.54 12.81 7.60 -12.85 -0.10 12.71 16 15 O -0.61 -14.88 14.05 5.16 0.07 -14.81 16 16 C 0.05 1.17 6.74 -82.18 -0.55 0.62 16 17 C -0.11 -2.26 7.78 -39.27 -0.31 -2.56 16 18 C -0.22 -4.51 5.75 -106.78 -0.61 -5.13 16 19 C 0.32 6.39 7.95 -155.90 -1.24 5.15 16 20 N -0.55 -10.08 10.47 -13.85 -0.14 -10.23 16 21 C 0.33 5.17 12.24 -92.11 -1.13 4.05 16 22 N -0.59 -9.90 8.88 -13.60 -0.12 -10.02 16 23 C 0.41 7.44 6.44 -154.85 -1.00 6.44 16 24 N -0.47 -7.67 5.04 -188.55 -0.95 -8.62 16 25 C 0.04 0.47 8.77 60.06 0.53 0.99 16 26 C 0.02 0.33 9.27 60.06 0.56 0.88 16 27 N -0.44 -8.93 3.21 -119.55 -0.38 -9.31 16 28 C 0.08 1.36 10.70 59.84 0.64 2.00 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 2.33 6.44 -51.92 -0.33 1.99 16 35 H 0.08 1.67 7.35 -51.93 -0.38 1.29 16 36 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 37 H 0.20 4.28 3.30 -52.49 -0.17 4.10 16 38 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.04 0.57 7.97 -51.93 -0.41 0.15 16 40 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 41 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 42 H 0.10 1.70 5.13 -51.93 -0.27 1.44 16 43 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.11 2.04 5.99 -51.93 -0.31 1.73 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -28.80 381.47 -9.22 -38.02 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.41 Total: 9.81 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: -2.05 Total: 24.02 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -1.20 Total: -68.25 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.28 Total: -22.34 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.80 -9.22 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.443 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds