Wall clock time and date at job start Wed Apr 1 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47260 * 2 1 4 4 C 1.46500 * 120.00072 * 270.00833 * 3 2 1 5 5 C 1.50697 * 109.46897 * 269.99606 * 4 3 2 6 6 H 1.07999 * 120.00095 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00293 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46888 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47331 * 120.00022 * 9 7 5 12 12 H 1.48495 * 109.47289 * 240.00272 * 9 7 5 13 13 C 1.34775 * 120.00038 * 89.99622 * 3 2 1 14 14 O 1.21285 * 120.00017 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00106 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47407 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00119 * 179.97438 * 16 15 13 18 18 H 1.09005 * 110.77907 * 328.23720 * 17 16 15 19 19 C 1.55156 * 110.72444 * 91.47468 * 17 16 15 20 20 C 1.54906 * 101.58662 * 153.86445 * 19 17 16 21 21 N 1.47433 * 104.82830 * 322.99443 * 20 19 17 22 22 C 1.34774 * 125.64590 * 204.14895 * 21 20 19 23 23 O 1.21286 * 119.99969 * 179.97438 * 22 21 20 24 24 C 1.50700 * 120.00082 * 359.97317 * 22 21 20 25 25 F 1.39904 * 109.47069 * 55.00090 * 24 22 21 26 26 F 1.39899 * 109.47164 * 175.00357 * 24 22 21 27 27 C 1.47021 * 108.70429 * 24.12776 * 21 20 19 28 28 H 1.09000 * 110.01147 * 118.43238 * 27 21 20 29 29 C 1.53006 * 109.87884 * 239.52231 * 27 21 20 30 30 H 1.08994 * 109.47312 * 59.99589 * 1 2 3 31 31 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46614 * 299.99642 * 1 2 3 33 33 H 1.09001 * 109.47033 * 240.00145 * 2 1 3 34 34 H 1.08997 * 109.47781 * 119.99823 * 2 1 3 35 35 H 1.09005 * 109.47127 * 29.99103 * 4 3 2 36 36 H 1.09005 * 109.47559 * 149.99442 * 4 3 2 37 37 H 0.97002 * 119.99735 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47294 * 59.98950 * 15 13 3 39 39 H 1.09003 * 109.47040 * 299.99460 * 15 13 3 40 40 H 1.00898 * 110.99699 * 303.94959 * 16 15 13 41 41 H 1.09001 * 111.00615 * 271.94497 * 19 17 16 42 42 H 1.09007 * 111.00333 * 35.78773 * 19 17 16 43 43 H 1.09000 * 110.36491 * 81.83023 * 20 19 17 44 44 H 1.08994 * 110.36884 * 204.15983 * 20 19 17 45 45 H 1.09004 * 109.47338 * 295.00312 * 24 22 21 46 46 H 1.09001 * 109.47002 * 177.80666 * 29 27 21 47 47 H 1.08993 * 109.46955 * 297.81103 * 29 27 21 48 48 H 1.09000 * 109.47050 * 57.80932 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0959 7 6 4.1488 2.3897 -2.8780 8 7 3.3488 3.1259 -3.6181 9 14 5.9132 2.0969 -3.4171 10 1 6.6010 1.2417 -2.4166 11 1 5.9212 1.4173 -4.7374 12 1 6.6201 3.3983 -3.5259 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2059 3.5889 17 6 2.0773 1.5457 4.8802 18 1 1.2559 0.8329 4.8071 19 6 3.3685 0.8459 5.3805 20 6 3.1467 0.8429 6.9136 21 7 2.4827 2.1274 7.2013 22 6 2.5000 2.7729 8.3843 23 8 1.9164 3.8289 8.5075 24 6 3.2444 2.1824 9.5540 25 9 4.5722 1.9387 9.1868 26 9 3.2144 3.0797 10.6269 27 6 1.7992 2.5879 5.9838 28 1 0.7265 2.6607 6.1632 29 6 2.3498 3.9518 5.5623 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5815 1.6877 -2.0284 36 1 2.0953 3.1412 -1.1384 37 1 3.6746 3.5157 -4.4444 38 1 2.6226 0.4187 2.5299 39 1 0.9443 1.0116 2.5302 40 1 3.2591 2.5439 3.5216 41 1 3.4368 -0.1709 4.9936 42 1 4.2540 1.4235 5.1149 43 1 2.5044 0.0108 7.2023 44 1 4.1020 0.7845 7.4350 45 1 2.7716 1.2459 9.8503 46 1 1.8665 4.2689 4.6381 47 1 2.1499 4.6823 6.3461 48 1 3.4253 3.8757 5.4022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177978142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:45 Heat of formation + Delta-G solvation = -154.056105 kcal Electronic energy + Delta-G solvation = -31392.269490 eV Core-core repulsion = 26732.512806 eV Total energy + Delta-G solvation = -4659.756684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.61972 -47.64536 -40.72134 -39.21107 -38.22428 -35.48240 -34.89827 -32.83975 -31.67706 -31.25354 -30.12616 -28.46409 -27.53474 -26.11228 -24.94538 -23.46403 -23.05621 -22.31385 -21.21082 -19.79650 -18.74158 -18.46446 -18.06717 -17.69519 -16.64114 -16.42689 -16.41707 -16.27040 -15.82785 -15.33498 -15.07925 -14.50840 -14.43144 -14.31300 -14.08141 -13.93321 -13.76759 -13.64468 -13.45524 -13.38575 -12.96941 -12.93525 -12.73173 -12.49187 -12.43908 -12.33768 -12.03104 -11.93257 -11.70341 -11.49470 -11.21471 -11.12693 -11.05579 -10.92376 -10.77470 -10.57360 -10.25339 -10.15975 -9.64631 -9.19951 -8.98318 -8.46380 -8.43769 -7.68735 -6.06912 -4.11780 1.72456 2.04452 3.23708 3.27055 3.34038 3.36614 3.41182 3.45725 3.60397 3.99700 4.06734 4.12978 4.22096 4.36671 4.43270 4.61417 4.77811 4.84977 5.02004 5.04349 5.18661 5.25550 5.27718 5.32532 5.36684 5.39834 5.45202 5.55411 5.58822 5.61399 5.75641 5.91675 5.97245 6.13662 6.18795 6.40227 6.43683 6.73318 6.84293 7.07627 7.22983 7.38076 7.43655 7.52538 7.89622 8.20914 8.40145 8.87904 9.07921 9.53517 11.01146 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002166 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.278498 B =12922.857900 C =13504.501335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.528 6.528 15 C 0.041 3.959 16 N -0.658 5.658 17 C 0.084 3.916 18 H 0.097 0.903 19 C -0.165 4.165 20 C 0.086 3.914 21 N -0.601 5.601 22 C 0.487 3.513 23 O -0.497 6.497 24 C 0.261 3.739 25 F -0.187 7.187 26 F -0.175 7.175 27 C 0.144 3.856 28 H 0.084 0.916 29 C -0.155 4.155 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.358 0.642 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.135 0.865 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -11.588 23.258 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.091 4.091 16 N -0.290 5.290 17 C -0.028 4.028 18 H 0.115 0.885 19 C -0.205 4.205 20 C -0.036 4.036 21 N -0.337 5.337 22 C 0.270 3.730 23 O -0.371 6.371 24 C 0.204 3.796 25 F -0.168 7.168 26 F -0.156 7.156 27 C 0.041 3.959 28 H 0.102 0.898 29 C -0.213 4.213 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.180 0.820 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.152 0.848 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.604 -9.898 23.179 25.621 hybrid contribution 1.867 -0.954 -0.330 2.123 sum -2.737 -10.852 22.849 25.442 Atomic orbital electron populations 1.22227 0.96786 1.01345 1.02432 1.21402 0.93512 0.84304 1.02526 1.48253 1.63968 1.13175 1.07724 1.19262 0.96199 0.93689 0.78081 1.21446 0.96917 1.31845 1.06190 0.92550 1.24942 0.97820 0.94948 0.96451 1.69943 1.35589 1.33435 1.14310 0.86454 0.84671 0.78048 0.78288 1.19885 1.20988 1.20868 1.20135 0.79029 0.87095 0.84845 1.90691 1.45094 1.17695 1.86903 1.21956 1.02321 0.94385 0.90478 1.60066 1.33224 1.36647 0.99051 1.22606 0.97127 0.93750 0.89324 0.88490 1.23575 0.99769 1.02891 0.94216 1.22585 0.98385 0.85268 0.97402 1.48570 1.51921 1.23047 1.10127 1.20616 0.83191 0.85649 0.83531 1.90830 1.43718 1.20586 1.81967 1.21596 0.80193 0.93335 0.84479 1.93029 1.37163 1.94791 1.91806 1.93068 1.96281 1.70706 1.55574 1.21635 0.96807 0.95474 0.81941 0.89788 1.21973 1.01205 0.95168 1.02975 0.91982 0.92244 0.93033 0.89992 0.91970 0.95067 0.93866 0.92755 0.92736 0.88630 0.82036 0.89207 0.89762 0.90389 0.89295 0.84794 0.89007 0.92070 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -11.85 2.46 -175.06 -0.43 -12.28 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.50 9.67 7.71 -10.99 -0.08 9.58 16 14 O -0.53 -12.66 15.78 5.55 0.09 -12.57 16 15 C 0.04 0.52 4.59 -4.97 -0.02 0.49 16 16 N -0.66 -7.86 4.39 -106.06 -0.47 -8.33 16 17 C 0.08 0.70 3.15 -65.88 -0.21 0.49 16 18 H 0.10 0.67 7.83 -51.93 -0.41 0.27 16 19 C -0.16 -1.07 6.67 -24.58 -0.16 -1.24 16 20 C 0.09 0.48 6.65 -2.53 -0.02 0.46 16 21 N -0.60 -5.15 3.08 -163.01 -0.50 -5.66 16 22 C 0.49 4.96 7.46 -10.99 -0.08 4.88 16 23 O -0.50 -7.10 15.53 5.55 0.09 -7.01 16 24 C 0.26 1.91 5.16 36.01 0.19 2.09 16 25 F -0.19 -1.49 15.39 2.25 0.03 -1.46 16 26 F -0.18 -1.76 16.95 2.25 0.04 -1.72 16 27 C 0.14 1.41 3.48 -66.95 -0.23 1.17 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 C -0.16 -1.88 8.26 37.16 0.31 -1.57 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 33 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 39 H 0.10 1.04 7.13 -51.93 -0.37 0.67 16 40 H 0.36 4.75 7.45 -39.29 -0.29 4.45 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.66 7.77 -51.93 -0.40 0.25 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.45 6.18 -51.93 -0.32 0.13 16 45 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 1.23 7.40 -51.93 -0.38 0.85 16 47 H 0.06 0.83 6.76 -51.93 -0.35 0.48 16 48 H 0.05 0.64 7.98 -51.93 -0.41 0.22 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -35.23 395.13 -7.23 -42.47 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.34 Total: 0.43 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.41 Total: 9.22 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.66 Total: -51.82 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.17 Total: -19.58 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.07 Total: -3.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.23 -7.23 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177978142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.590 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds