Wall clock time and date at job start Wed Apr 1 2020 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47260 * 2 1 4 4 C 1.46500 * 120.00072 * 270.00833 * 3 2 1 5 5 C 1.50697 * 109.46897 * 269.99606 * 4 3 2 6 6 H 1.07999 * 120.00095 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00293 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46888 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47331 * 120.00022 * 9 7 5 12 12 H 1.48495 * 109.47289 * 240.00272 * 9 7 5 13 13 C 1.34775 * 120.00038 * 89.99622 * 3 2 1 14 14 O 1.21285 * 120.00017 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00106 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47407 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00119 * 179.97438 * 16 15 13 18 18 H 1.09005 * 110.77907 * 328.23720 * 17 16 15 19 19 C 1.55156 * 110.72444 * 91.47468 * 17 16 15 20 20 C 1.54906 * 101.58662 * 153.86445 * 19 17 16 21 21 N 1.47433 * 104.82830 * 322.99443 * 20 19 17 22 22 C 1.34774 * 125.64590 * 204.14895 * 21 20 19 23 23 O 1.21286 * 119.99969 * 179.97438 * 22 21 20 24 24 C 1.50700 * 120.00082 * 359.97317 * 22 21 20 25 25 F 1.39904 * 109.47069 * 55.00090 * 24 22 21 26 26 F 1.39899 * 109.47164 * 175.00357 * 24 22 21 27 27 C 1.47021 * 108.70429 * 24.12776 * 21 20 19 28 28 H 1.09000 * 110.01147 * 118.43238 * 27 21 20 29 29 C 1.53006 * 109.87884 * 239.52231 * 27 21 20 30 30 H 1.08994 * 109.47312 * 59.99589 * 1 2 3 31 31 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46614 * 299.99642 * 1 2 3 33 33 H 1.09001 * 109.47033 * 240.00145 * 2 1 3 34 34 H 1.08997 * 109.47781 * 119.99823 * 2 1 3 35 35 H 1.09005 * 109.47127 * 29.99103 * 4 3 2 36 36 H 1.09005 * 109.47559 * 149.99442 * 4 3 2 37 37 H 0.97002 * 119.99735 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47294 * 59.98950 * 15 13 3 39 39 H 1.09003 * 109.47040 * 299.99460 * 15 13 3 40 40 H 1.00898 * 110.99699 * 303.94959 * 16 15 13 41 41 H 1.09001 * 111.00615 * 271.94497 * 19 17 16 42 42 H 1.09007 * 111.00333 * 35.78773 * 19 17 16 43 43 H 1.09000 * 110.36491 * 81.83023 * 20 19 17 44 44 H 1.08994 * 110.36884 * 204.15983 * 20 19 17 45 45 H 1.09004 * 109.47338 * 295.00312 * 24 22 21 46 46 H 1.09001 * 109.47002 * 177.80666 * 29 27 21 47 47 H 1.08993 * 109.46955 * 297.81103 * 29 27 21 48 48 H 1.09000 * 109.47050 * 57.80932 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0959 7 6 4.1488 2.3897 -2.8780 8 7 3.3488 3.1259 -3.6181 9 14 5.9132 2.0969 -3.4171 10 1 6.6010 1.2417 -2.4166 11 1 5.9212 1.4173 -4.7374 12 1 6.6201 3.3983 -3.5259 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2059 3.5889 17 6 2.0773 1.5457 4.8802 18 1 1.2559 0.8329 4.8071 19 6 3.3685 0.8459 5.3805 20 6 3.1467 0.8429 6.9136 21 7 2.4827 2.1274 7.2013 22 6 2.5000 2.7729 8.3843 23 8 1.9164 3.8289 8.5075 24 6 3.2444 2.1824 9.5540 25 9 4.5722 1.9387 9.1868 26 9 3.2144 3.0797 10.6269 27 6 1.7992 2.5879 5.9838 28 1 0.7265 2.6607 6.1632 29 6 2.3498 3.9518 5.5623 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5815 1.6877 -2.0284 36 1 2.0953 3.1412 -1.1384 37 1 3.6746 3.5157 -4.4444 38 1 2.6226 0.4187 2.5299 39 1 0.9443 1.0116 2.5302 40 1 3.2591 2.5439 3.5216 41 1 3.4368 -0.1709 4.9936 42 1 4.2540 1.4235 5.1149 43 1 2.5044 0.0108 7.2023 44 1 4.1020 0.7845 7.4350 45 1 2.7716 1.2459 9.8503 46 1 1.8665 4.2689 4.6381 47 1 2.1499 4.6823 6.3461 48 1 3.4253 3.8757 5.4022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177978142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:38 Heat of formation + Delta-G solvation = -179.401198 kcal Electronic energy + Delta-G solvation = -31393.368536 eV Core-core repulsion = 26732.512806 eV Total energy + Delta-G solvation = -4660.855729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.23500 -48.27957 -41.46571 -40.62351 -39.09840 -36.93738 -35.91794 -34.86611 -32.55782 -31.99334 -31.51397 -29.62946 -28.68406 -27.29098 -26.00148 -24.62011 -24.07276 -23.73535 -21.85915 -20.55180 -19.94717 -19.26779 -18.68015 -18.61097 -18.38660 -17.80782 -17.42117 -17.08383 -16.86388 -16.67058 -16.31918 -15.81638 -15.22928 -15.17185 -15.02719 -14.82020 -14.72112 -14.60479 -14.45491 -14.36150 -14.20620 -13.93287 -13.65604 -13.61290 -13.45743 -13.23346 -13.17905 -13.08863 -13.00992 -12.81279 -12.66728 -12.54455 -12.43588 -12.12512 -11.89078 -11.82396 -11.70144 -11.66346 -11.04074 -10.64639 -10.51448 -9.90126 -9.38575 -9.30416 -8.21367 -6.36241 0.98436 1.36144 1.38269 1.38878 1.50061 1.93262 2.28451 2.43582 2.70113 2.95412 3.08066 3.13483 3.49026 3.52710 3.63966 3.72707 3.82271 4.04319 4.11871 4.17101 4.29876 4.38024 4.42142 4.47681 4.53866 4.58168 4.65433 4.71481 4.73910 4.95341 4.97846 5.04419 5.04857 5.07680 5.09650 5.25052 5.26035 5.35285 5.44734 5.60415 5.87502 6.00666 6.08485 6.16667 6.26907 6.65481 6.73217 6.89518 7.30712 7.58489 8.85675 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002166 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.278498 B =12922.857900 C =13504.501335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.061 3.939 16 N -0.679 5.679 17 C 0.091 3.909 18 H 0.127 0.873 19 C -0.160 4.160 20 C 0.085 3.915 21 N -0.596 5.596 22 C 0.477 3.523 23 O -0.552 6.552 24 C 0.266 3.734 25 F -0.190 7.190 26 F -0.194 7.194 27 C 0.142 3.858 28 H 0.081 0.919 29 C -0.146 4.146 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.018 0.982 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.347 0.653 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.193 0.807 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -16.006 25.072 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.196 1.196 12 H -0.211 1.211 13 C 0.280 3.720 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.310 5.310 17 C -0.020 4.020 18 H 0.145 0.855 19 C -0.199 4.199 20 C -0.036 4.036 21 N -0.330 5.330 22 C 0.262 3.738 23 O -0.430 6.430 24 C 0.210 3.790 25 F -0.171 7.171 26 F -0.175 7.175 27 C 0.039 3.961 28 H 0.099 0.901 29 C -0.204 4.204 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.036 0.964 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.116 0.884 45 H 0.210 0.790 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.188 -14.412 25.010 29.168 hybrid contribution 1.698 0.460 -0.919 1.985 sum -2.490 -13.953 24.091 27.951 Atomic orbital electron populations 1.22165 0.94798 1.03440 1.01596 1.21755 0.95119 0.81248 1.04062 1.48282 1.64163 1.15155 1.06125 1.18648 0.95182 0.91379 0.80728 1.21736 0.97846 1.31646 1.06283 0.92639 1.25892 1.02371 0.94600 0.96615 1.70072 1.37748 1.34432 1.14834 0.85363 0.79059 0.77899 0.78447 1.18763 1.19553 1.21106 1.21405 0.77304 0.86663 0.86663 1.90660 1.47719 1.20684 1.87951 1.21858 1.04612 0.94138 0.86434 1.59982 1.32724 1.37826 1.00494 1.22649 0.99262 0.93332 0.86737 0.85502 1.23563 0.97718 1.03786 0.94836 1.22889 0.99451 0.84475 0.96758 1.48634 1.51230 1.23957 1.09153 1.21276 0.82836 0.85084 0.84601 1.90806 1.46205 1.22954 1.83043 1.21956 0.79874 0.94622 0.82576 1.93023 1.37531 1.94719 1.91811 1.93030 1.96339 1.71838 1.56303 1.21575 0.96605 0.94580 0.83331 0.90117 1.21815 1.00606 0.96723 1.01244 0.94880 0.88572 0.91871 0.91341 0.87488 0.96353 0.99006 0.92533 0.89314 0.85724 0.83297 0.86342 0.91564 0.86571 0.88434 0.79018 0.90880 0.94325 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 10.24 71.98 0.74 -2.79 16 2 C 0.10 2.69 5.93 86.38 0.51 3.20 16 3 N -0.61 -24.05 2.46 -826.15 -2.03 -26.08 16 4 C 0.26 13.99 5.16 85.63 0.44 14.43 16 5 C -0.54 -30.43 9.39 25.60 0.24 -30.19 16 6 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.49 18.82 7.71 87.66 0.68 19.49 16 14 O -0.59 -29.67 15.78 -3.04 -0.05 -29.72 16 15 C 0.06 1.35 4.59 85.56 0.39 1.74 16 16 N -0.68 -15.16 4.39 -489.45 -2.15 -17.31 16 17 C 0.09 1.22 3.15 46.10 0.15 1.36 16 18 H 0.13 1.03 7.83 -2.38 -0.02 1.02 16 19 C -0.16 -1.42 6.67 31.98 0.21 -1.20 16 20 C 0.09 0.56 6.65 86.85 0.58 1.14 16 21 N -0.60 -8.94 3.08 -788.04 -2.43 -11.36 16 22 C 0.48 9.22 7.46 87.66 0.65 9.87 16 23 O -0.55 -16.26 15.53 -3.05 -0.05 -16.31 16 24 C 0.27 3.24 5.16 71.24 0.37 3.60 16 25 F -0.19 -2.55 15.39 44.97 0.69 -1.86 16 26 F -0.19 -3.70 16.95 44.97 0.76 -2.93 16 27 C 0.14 2.61 3.48 45.34 0.16 2.77 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 C -0.15 -3.73 8.26 71.98 0.59 -3.14 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.23 7.22 -2.38 -0.02 1.22 16 33 H 0.07 2.02 8.07 -2.39 -0.02 2.01 16 34 H 0.11 1.92 6.44 -2.39 -0.02 1.91 16 35 H 0.02 1.01 8.07 -2.38 -0.02 0.99 16 36 H -0.01 -0.52 7.42 -2.38 -0.02 -0.53 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.09 1.42 7.40 -2.39 -0.02 1.40 16 39 H 0.12 2.09 7.13 -2.39 -0.02 2.08 16 40 H 0.35 9.14 7.45 -89.70 -0.67 8.47 16 41 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.87 7.77 -2.38 -0.02 0.85 16 43 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.10 0.55 6.18 -2.39 -0.01 0.54 16 45 H 0.19 0.14 8.14 -2.38 -0.02 0.12 16 46 H 0.07 2.12 7.40 -2.39 -0.02 2.10 16 47 H 0.04 1.14 6.76 -2.39 -0.02 1.12 16 48 H 0.04 1.17 7.98 -2.39 -0.02 1.15 16 Total: -1.00 -86.19 395.13 3.55 -82.64 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.31 Total: 11.69 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.17 Total: 20.97 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -6.32 Total: -111.06 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.10 Total: -46.03 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.45 Total: -4.80 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -86.19 3.55 -82.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177978142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.765 kcal (2) G-P(sol) polarization free energy of solvation -86.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds