Wall clock time and date at job start Wed Apr 1 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28435 * 125.19220 * 2 1 4 4 C 1.30869 * 110.93208 * 180.02562 * 3 2 1 5 5 C 1.39675 * 107.85659 * 359.77425 * 4 3 2 6 6 C 1.36600 * 125.18932 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88610 * 359.93511 * 6 2 1 8 8 O 1.21628 * 119.99937 * 8.08133 * 7 6 2 9 9 N 1.34772 * 120.00360 * 188.07253 * 7 6 2 10 10 C 1.47365 * 125.57202 * 0.50694 * 9 7 6 11 11 C 1.54827 * 104.79358 * 155.09135 * 10 9 7 12 12 C 1.54931 * 101.89944 * 37.09551 * 11 10 9 13 13 H 1.08996 * 113.37374 * 87.88455 * 12 11 10 14 14 C 1.55780 * 108.55663 * 215.38314 * 12 11 10 15 15 N 1.47855 * 107.27183 * 113.93755 * 14 12 11 16 16 C 1.46893 * 111.00142 * 212.11388 * 15 14 12 17 17 C 1.50693 * 109.47399 * 301.42127 * 16 15 14 18 18 O 1.21287 * 119.99876 * 353.97088 * 17 16 15 19 19 N 1.34779 * 120.00015 * 173.97784 * 17 16 15 20 20 C 1.37096 * 119.99752 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00635 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99721 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00027 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47052 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47018 * 119.99991 * 24 22 20 27 27 H 1.48493 * 109.46957 * 239.99844 * 24 22 20 28 28 C 1.48421 * 105.77287 * 332.60562 * 15 14 12 29 29 C 1.46850 * 125.57933 * 180.80559 * 9 7 6 30 30 H 1.09004 * 112.02253 * 59.08543 * 29 9 7 31 31 H 1.08995 * 109.46837 * 264.21930 * 1 2 3 32 32 H 1.08995 * 109.47019 * 24.22237 * 1 2 3 33 33 H 1.09005 * 109.47176 * 144.22056 * 1 2 3 34 34 H 1.08000 * 126.07179 * 180.02562 * 4 3 2 35 35 H 1.08004 * 127.31728 * 180.27134 * 5 4 3 36 36 H 1.09004 * 110.37308 * 273.91758 * 10 9 7 37 37 H 1.08992 * 110.37884 * 36.25649 * 10 9 7 38 38 H 1.08999 * 110.94022 * 278.94228 * 11 10 9 39 39 H 1.08997 * 110.94577 * 155.24753 * 11 10 9 40 40 H 1.09004 * 110.48745 * 354.14762 * 14 12 11 41 41 H 1.09002 * 109.33159 * 233.08210 * 14 12 11 42 42 H 1.09004 * 109.47063 * 61.42463 * 16 15 14 43 43 H 1.09005 * 109.47065 * 181.41412 * 16 15 14 44 44 H 0.97000 * 120.00003 * 359.97438 * 19 17 16 45 45 H 0.96991 * 119.99372 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.58804 * 280.53553 * 28 15 14 47 47 H 1.09001 * 110.58690 * 157.62198 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7272 -0.0005 5 6 3.5612 -0.6668 0.0043 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5166 0.0002 8 8 0.6197 -2.7743 -0.1467 9 7 2.6915 -3.5134 0.1635 10 6 4.1417 -3.3420 0.3610 11 6 4.5924 -4.6200 1.1100 12 6 3.7054 -5.7060 0.4511 13 1 4.1475 -6.1399 -0.4457 14 6 3.3220 -6.7574 1.5347 15 7 1.8609 -6.6629 1.7404 16 6 1.5037 -6.9747 3.1308 17 6 1.9796 -8.3631 3.4724 18 8 2.4606 -9.0684 2.6109 19 7 1.8705 -8.8212 4.7352 20 6 2.3029 -10.0846 5.0459 21 1 2.7313 -10.7126 4.2788 22 6 2.1899 -10.5571 6.3477 23 7 1.6690 -9.7927 7.2813 24 14 2.7797 -12.2782 6.7712 25 1 3.3221 -12.9295 5.5519 26 1 3.8433 -12.1967 7.8043 27 1 1.6421 -13.0766 7.2939 28 6 1.4947 -5.2660 1.3976 29 6 2.3784 -4.9481 0.1675 30 1 1.9135 -5.2677 -0.7652 31 1 -0.3633 -0.1035 1.0224 32 1 -0.3633 0.9372 -0.4216 33 1 -0.3634 -0.8338 -0.6009 34 1 4.3049 1.4166 -0.0003 35 1 4.4595 -1.2663 0.0093 36 1 4.6494 -3.2668 -0.6006 37 1 4.3405 -2.4575 0.9661 38 1 4.3834 -4.5405 2.1767 39 1 5.6493 -4.8215 0.9355 40 1 3.8427 -6.5492 2.4694 41 1 3.5830 -7.7541 1.1787 42 1 1.9769 -6.2540 3.7978 43 1 0.4213 -6.9223 3.2484 44 1 1.4860 -8.2571 5.4243 45 1 1.5905 -10.1225 8.1900 46 1 1.7306 -4.5944 2.2229 47 1 0.4381 -5.1995 1.1380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187124682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:24 Heat of formation + Delta-G solvation = 47.760769 kcal Electronic energy + Delta-G solvation = -30709.573418 eV Core-core repulsion = 26509.257357 eV Total energy + Delta-G solvation = -4200.316061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.87191 -40.78399 -38.81267 -37.89550 -35.87389 -33.91956 -33.64017 -32.37707 -31.34064 -31.25471 -29.91905 -27.79403 -27.26612 -26.57037 -24.35641 -24.25616 -22.25009 -22.12929 -21.13150 -20.18591 -19.69387 -19.05562 -17.86014 -17.78653 -16.74682 -16.72038 -16.17375 -15.93088 -15.74027 -15.12109 -14.85868 -14.68930 -14.39999 -14.24084 -14.19319 -13.83327 -13.56277 -13.46717 -13.16562 -13.01828 -12.91115 -12.72198 -12.45235 -12.18793 -12.08335 -11.84734 -11.51802 -11.29998 -11.19945 -10.99894 -10.94754 -10.83396 -10.64413 -10.35900 -10.31830 -10.24108 -9.56830 -9.51708 -9.36559 -8.99661 -8.46376 -8.02488 -7.93825 -6.43380 -3.84208 0.93581 1.97486 2.28223 2.71550 2.88243 3.14934 3.25730 3.32744 3.87810 3.89685 4.03794 4.20104 4.21228 4.25575 4.46233 4.57004 4.75960 4.80329 4.85369 4.90231 5.01744 5.02407 5.08400 5.21322 5.22945 5.24093 5.28383 5.32943 5.36790 5.39748 5.62734 5.68564 5.80572 5.82650 5.92626 5.95656 5.99508 6.12198 6.19755 6.25538 6.35919 6.47819 7.07961 7.14503 7.20188 7.53843 7.65329 7.80203 8.04438 8.59634 9.16319 9.52400 10.03741 10.74454 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.142472 B =13205.886070 C =13511.817012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.257 5.257 3 N -0.279 5.279 4 C -0.005 4.005 5 C -0.202 4.202 6 C -0.032 4.032 7 C 0.604 3.396 8 O -0.536 6.536 9 N -0.597 5.597 10 C 0.085 3.915 11 C -0.131 4.131 12 C -0.107 4.107 13 H 0.105 0.895 14 C 0.053 3.947 15 N -0.490 5.490 16 C 0.038 3.962 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.032 3.968 29 C 0.142 3.858 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.187 0.813 35 H 0.172 0.828 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.044 0.956 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 20.638 -13.241 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.045 5.045 3 N -0.112 5.112 4 C -0.180 4.180 5 C -0.231 4.231 6 C -0.161 4.161 7 C 0.392 3.608 8 O -0.413 6.413 9 N -0.330 5.330 10 C -0.037 4.037 11 C -0.169 4.169 12 C -0.126 4.126 13 H 0.123 0.877 14 C -0.075 4.075 15 N -0.214 5.214 16 C -0.094 4.094 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.097 4.097 29 C 0.039 3.961 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.204 0.796 35 H 0.189 0.811 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.998 20.566 -14.015 25.067 hybrid contribution 0.951 -0.452 1.451 1.793 sum 3.948 20.114 -12.564 24.042 Atomic orbital electron populations 1.22370 0.72348 1.05798 1.05077 1.45639 1.07990 1.01632 1.49222 1.73228 1.04510 1.13627 1.19831 1.23624 0.93475 0.95079 1.05869 1.22813 0.96163 0.95679 1.08407 1.21313 0.91558 0.89488 1.13710 1.16486 0.84803 0.82440 0.77098 1.90809 1.15948 1.83996 1.50546 1.48118 1.08108 1.05979 1.70791 1.22917 0.80216 0.99888 1.00725 1.22979 1.00569 0.93186 1.00131 1.23477 0.94028 0.95499 0.99615 0.87659 1.23243 0.87960 1.00028 0.96260 1.64523 1.14351 1.20697 1.21860 1.22086 1.01933 0.96632 0.88728 1.19683 0.85458 0.88412 0.83613 1.90500 1.49408 1.58778 1.47547 1.41876 1.54797 1.15479 1.07914 1.19745 1.37232 0.90823 0.94914 0.87824 1.25276 0.97376 0.99964 0.95406 1.69624 1.44952 1.37182 1.02549 0.85799 0.78272 0.81680 0.78597 1.19199 1.20782 1.20744 1.23502 1.00787 0.89603 0.95825 1.22518 0.96288 0.77830 0.99496 0.88272 0.89641 0.88662 0.87185 0.79588 0.81073 0.90434 0.89007 0.90268 0.89136 0.93507 0.88120 0.93529 0.89045 0.77501 0.91917 0.93805 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.75 59.85 0.64 1.33 16 2 N -0.26 -2.76 3.75 -63.88 -0.24 -3.00 16 3 N -0.28 -3.00 11.90 30.59 0.36 -2.63 16 4 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 5 C -0.20 -1.70 9.27 -38.98 -0.36 -2.06 16 6 C -0.03 -0.35 6.90 -82.06 -0.57 -0.91 16 7 C 0.60 7.31 7.62 -12.64 -0.10 7.21 16 8 O -0.54 -7.74 14.76 5.25 0.08 -7.67 16 9 N -0.60 -6.30 2.97 -162.88 -0.48 -6.78 16 10 C 0.08 0.62 5.26 -2.61 -0.01 0.61 16 11 C -0.13 -1.08 6.39 -24.75 -0.16 -1.24 16 12 C -0.11 -1.15 4.15 -86.83 -0.36 -1.51 16 13 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 14 C 0.05 0.81 4.96 -1.82 -0.01 0.80 16 15 N -0.49 -8.17 5.13 -230.96 -1.19 -9.35 16 16 C 0.04 0.69 5.31 -4.98 -0.03 0.66 16 17 C 0.44 10.33 7.39 -10.99 -0.08 10.25 16 18 O -0.58 -15.20 14.04 5.55 0.08 -15.13 16 19 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.03 0.45 5.55 -2.05 -0.01 0.43 16 29 C 0.14 1.69 3.80 -65.52 -0.25 1.44 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.98 6.50 -51.93 -0.34 0.64 16 34 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.17 0.97 4.95 -52.48 -0.26 0.71 16 36 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 37 H 0.09 0.58 5.38 -51.93 -0.28 0.30 16 38 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 41 H 0.10 1.81 6.94 -51.93 -0.36 1.45 16 42 H 0.05 0.77 7.99 -51.93 -0.42 0.36 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 47 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -33.88 376.82 -8.25 -42.13 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.44 Total: 9.99 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.74 Total: 8.88 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.88 Total: -59.75 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.88 -8.25 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187124682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.888 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds