Wall clock time and date at job start Wed Apr 1 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28435 * 125.19220 * 2 1 4 4 C 1.30869 * 110.93208 * 180.02562 * 3 2 1 5 5 C 1.39675 * 107.85659 * 359.77425 * 4 3 2 6 6 C 1.36600 * 125.18932 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88610 * 359.93511 * 6 2 1 8 8 O 1.21628 * 119.99937 * 8.08133 * 7 6 2 9 9 N 1.34772 * 120.00360 * 188.07253 * 7 6 2 10 10 C 1.47365 * 125.57202 * 0.50694 * 9 7 6 11 11 C 1.54827 * 104.79358 * 155.09135 * 10 9 7 12 12 C 1.54931 * 101.89944 * 37.09551 * 11 10 9 13 13 H 1.08996 * 113.37374 * 87.88455 * 12 11 10 14 14 C 1.55780 * 108.55663 * 215.38314 * 12 11 10 15 15 N 1.47855 * 107.27183 * 113.93755 * 14 12 11 16 16 C 1.46893 * 111.00142 * 212.11388 * 15 14 12 17 17 C 1.50693 * 109.47399 * 301.42127 * 16 15 14 18 18 O 1.21287 * 119.99876 * 353.97088 * 17 16 15 19 19 N 1.34779 * 120.00015 * 173.97784 * 17 16 15 20 20 C 1.37096 * 119.99752 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00635 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99721 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00027 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47052 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47018 * 119.99991 * 24 22 20 27 27 H 1.48493 * 109.46957 * 239.99844 * 24 22 20 28 28 C 1.48421 * 105.77287 * 332.60562 * 15 14 12 29 29 C 1.46850 * 125.57933 * 180.80559 * 9 7 6 30 30 H 1.09004 * 112.02253 * 59.08543 * 29 9 7 31 31 H 1.08995 * 109.46837 * 264.21930 * 1 2 3 32 32 H 1.08995 * 109.47019 * 24.22237 * 1 2 3 33 33 H 1.09005 * 109.47176 * 144.22056 * 1 2 3 34 34 H 1.08000 * 126.07179 * 180.02562 * 4 3 2 35 35 H 1.08004 * 127.31728 * 180.27134 * 5 4 3 36 36 H 1.09004 * 110.37308 * 273.91758 * 10 9 7 37 37 H 1.08992 * 110.37884 * 36.25649 * 10 9 7 38 38 H 1.08999 * 110.94022 * 278.94228 * 11 10 9 39 39 H 1.08997 * 110.94577 * 155.24753 * 11 10 9 40 40 H 1.09004 * 110.48745 * 354.14762 * 14 12 11 41 41 H 1.09002 * 109.33159 * 233.08210 * 14 12 11 42 42 H 1.09004 * 109.47063 * 61.42463 * 16 15 14 43 43 H 1.09005 * 109.47065 * 181.41412 * 16 15 14 44 44 H 0.97000 * 120.00003 * 359.97438 * 19 17 16 45 45 H 0.96991 * 119.99372 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.58804 * 280.53553 * 28 15 14 47 47 H 1.09001 * 110.58690 * 157.62198 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7272 -0.0005 5 6 3.5612 -0.6668 0.0043 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5166 0.0002 8 8 0.6197 -2.7743 -0.1467 9 7 2.6915 -3.5134 0.1635 10 6 4.1417 -3.3420 0.3610 11 6 4.5924 -4.6200 1.1100 12 6 3.7054 -5.7060 0.4511 13 1 4.1475 -6.1399 -0.4457 14 6 3.3220 -6.7574 1.5347 15 7 1.8609 -6.6629 1.7404 16 6 1.5037 -6.9747 3.1308 17 6 1.9796 -8.3631 3.4724 18 8 2.4606 -9.0684 2.6109 19 7 1.8705 -8.8212 4.7352 20 6 2.3029 -10.0846 5.0459 21 1 2.7313 -10.7126 4.2788 22 6 2.1899 -10.5571 6.3477 23 7 1.6690 -9.7927 7.2813 24 14 2.7797 -12.2782 6.7712 25 1 3.3221 -12.9295 5.5519 26 1 3.8433 -12.1967 7.8043 27 1 1.6421 -13.0766 7.2939 28 6 1.4947 -5.2660 1.3976 29 6 2.3784 -4.9481 0.1675 30 1 1.9135 -5.2677 -0.7652 31 1 -0.3633 -0.1035 1.0224 32 1 -0.3633 0.9372 -0.4216 33 1 -0.3634 -0.8338 -0.6009 34 1 4.3049 1.4166 -0.0003 35 1 4.4595 -1.2663 0.0093 36 1 4.6494 -3.2668 -0.6006 37 1 4.3405 -2.4575 0.9661 38 1 4.3834 -4.5405 2.1767 39 1 5.6493 -4.8215 0.9355 40 1 3.8427 -6.5492 2.4694 41 1 3.5830 -7.7541 1.1787 42 1 1.9769 -6.2540 3.7978 43 1 0.4213 -6.9223 3.2484 44 1 1.4860 -8.2571 5.4243 45 1 1.5905 -10.1225 8.1900 46 1 1.7306 -4.5944 2.2229 47 1 0.4381 -5.1995 1.1380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187124682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:23 Heat of formation + Delta-G solvation = 22.188484 kcal Electronic energy + Delta-G solvation = -30710.682316 eV Core-core repulsion = 26509.257357 eV Total energy + Delta-G solvation = -4201.424959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.56568 -41.74933 -40.28196 -39.23023 -37.04530 -35.87713 -34.35507 -33.43446 -33.15439 -32.14632 -30.99569 -28.75377 -28.09916 -27.97041 -26.09987 -25.10222 -23.03825 -22.93261 -22.29703 -21.12823 -20.88947 -20.42944 -19.83511 -18.59831 -17.73898 -17.54834 -17.50439 -17.09026 -16.67447 -16.47247 -16.32898 -15.97352 -15.76523 -15.34187 -15.15514 -14.96511 -14.67221 -14.62705 -14.27598 -14.03568 -13.77760 -13.60794 -13.55723 -13.34251 -13.26392 -13.18369 -12.96480 -12.93404 -12.44133 -12.41071 -12.11117 -12.00309 -11.86847 -11.77687 -11.53189 -11.43148 -11.22394 -10.33124 -10.31881 -10.02742 -10.02538 -9.83367 -9.35767 -8.47695 -5.96466 0.17696 1.24926 1.36057 1.41711 1.55998 1.63629 1.95390 2.01727 2.07203 2.28030 2.81304 3.06288 3.19052 3.33043 3.41887 3.58360 3.61425 3.69193 4.04726 4.10496 4.14152 4.21296 4.23119 4.25621 4.29138 4.34756 4.39645 4.48515 4.52311 4.56901 4.63433 4.65588 4.67846 4.80334 4.88090 4.93884 5.05026 5.13130 5.15959 5.35043 5.40514 5.52735 5.70097 5.78675 5.89150 6.03491 6.28954 6.58256 6.85229 7.05880 7.11254 7.53449 8.08398 8.70100 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.142472 B =13205.886070 C =13511.817012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.271 5.271 3 N -0.302 5.302 4 C -0.005 4.005 5 C -0.186 4.186 6 C -0.057 4.057 7 C 0.600 3.400 8 O -0.571 6.571 9 N -0.594 5.594 10 C 0.084 3.916 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.125 0.875 14 C 0.054 3.946 15 N -0.509 5.509 16 C 0.050 3.950 17 C 0.443 3.557 18 O -0.611 6.611 19 N -0.574 5.574 20 C -0.329 4.329 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.040 3.960 29 C 0.145 3.855 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.220 0.780 35 H 0.202 0.798 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 22.125 -13.523 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.059 5.059 3 N -0.135 5.135 4 C -0.181 4.181 5 C -0.215 4.215 6 C -0.185 4.185 7 C 0.389 3.611 8 O -0.451 6.451 9 N -0.326 5.326 10 C -0.037 4.037 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.143 0.857 14 C -0.074 4.074 15 N -0.234 5.234 16 C -0.082 4.082 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.211 5.211 20 C -0.459 4.459 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.089 4.089 29 C 0.041 3.959 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.219 0.781 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.061 22.081 -14.290 26.784 hybrid contribution 0.311 -0.887 1.509 1.778 sum 5.372 21.194 -12.781 25.326 Atomic orbital electron populations 1.22415 0.71905 1.06241 1.05158 1.45836 1.08567 1.01677 1.49807 1.73219 1.05669 1.14023 1.20610 1.24276 0.93527 0.95853 1.04409 1.23215 0.96048 0.95901 1.06310 1.21363 0.92757 0.88845 1.15551 1.16748 0.84519 0.83236 0.76632 1.90788 1.17476 1.84578 1.52240 1.48135 1.09475 1.04903 1.70094 1.23192 0.78113 0.99912 1.02452 1.22978 1.01617 0.92358 0.99208 1.23433 0.94103 0.94638 0.99065 0.85678 1.23150 0.87047 0.99882 0.97323 1.64442 1.15575 1.22687 1.20713 1.21932 1.02525 0.93469 0.90248 1.20543 0.83885 0.89968 0.82572 1.90479 1.50494 1.60343 1.48325 1.41942 1.55365 1.15091 1.08712 1.19701 1.39029 0.91984 0.95167 0.90088 1.26073 0.96970 1.03606 0.94785 1.69688 1.45040 1.38644 1.02945 0.84852 0.78162 0.77023 0.78198 1.19618 1.19514 1.19797 1.23419 1.00628 0.87963 0.96893 1.22370 0.96396 0.79142 0.98001 0.88947 0.89426 0.86932 0.88330 0.76357 0.78099 0.87474 0.87329 0.91579 0.86292 0.94328 0.91463 0.91670 0.87914 0.77159 0.91325 0.93680 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.75 127.77 1.37 2.74 16 2 N -0.27 -5.57 3.75 -356.02 -1.33 -6.90 16 3 N -0.30 -5.97 11.90 -57.13 -0.68 -6.65 16 4 C -0.01 -0.08 12.03 85.18 1.02 0.95 16 5 C -0.19 -2.51 9.27 22.66 0.21 -2.30 16 6 C -0.06 -1.14 6.90 40.79 0.28 -0.86 16 7 C 0.60 13.96 7.62 86.59 0.66 14.62 16 8 O -0.57 -16.76 14.76 -4.12 -0.06 -16.82 16 9 N -0.59 -11.37 2.97 -787.48 -2.34 -13.71 16 10 C 0.08 0.91 5.26 86.84 0.46 1.36 16 11 C -0.12 -1.65 6.39 31.88 0.20 -1.45 16 12 C -0.09 -1.84 4.15 -8.34 -0.03 -1.88 16 13 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 14 C 0.05 1.65 4.96 87.08 0.43 2.08 16 15 N -0.51 -17.20 5.13 -884.62 -4.54 -21.74 16 16 C 0.05 1.82 5.31 85.56 0.45 2.28 16 17 C 0.44 21.26 7.39 87.65 0.65 21.91 16 18 O -0.61 -33.33 14.04 -3.05 -0.04 -33.37 16 19 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 20 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -49.95 13.05 21.67 0.28 -49.67 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 C 0.04 1.11 5.55 86.61 0.48 1.59 16 29 C 0.14 3.30 3.80 46.36 0.18 3.47 16 30 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.84 6.50 -2.38 -0.02 1.83 16 34 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.20 1.26 4.95 -2.91 -0.01 1.24 16 36 H 0.11 0.63 8.01 -2.38 -0.02 0.61 16 37 H 0.11 0.87 5.38 -2.39 -0.01 0.85 16 38 H 0.07 1.10 7.51 -2.39 -0.02 1.08 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.04 1.22 6.94 -2.38 -0.02 1.21 16 41 H 0.07 2.50 6.94 -2.39 -0.02 2.49 16 42 H 0.07 2.15 7.99 -2.38 -0.02 2.13 16 43 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 44 H 0.39 19.56 7.90 -92.71 -0.73 18.83 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.04 1.25 7.87 -2.39 -0.02 1.23 16 47 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -76.04 376.82 -0.37 -76.41 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.29 Total: 32.55 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 7.65 Total: 26.35 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -10.23 Total: -129.95 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.10 Total: -50.19 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -76.04 -0.37 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187124682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.601 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds