Wall clock time and date at job start Wed Apr 1 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35851 * 126.13185 * 2 1 4 4 N 1.30170 * 108.99919 * 180.02562 * 3 2 1 5 5 C 1.35762 * 108.86857 * 359.97438 * 4 3 2 6 6 C 1.47325 * 126.23314 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99401 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00003 * 0.02855 * 6 5 4 9 9 C 1.47407 * 125.59376 * 359.97438 * 8 6 5 10 10 C 1.57003 * 105.09950 * 204.24009 * 9 8 6 11 11 C 1.55174 * 100.79952 * 323.09222 * 10 9 8 12 12 H 1.09001 * 113.24669 * 158.38943 * 11 10 9 13 13 C 1.53753 * 108.29610 * 284.77690 * 11 10 9 14 14 N 1.47011 * 108.07400 * 125.30835 * 13 11 10 15 15 C 1.46900 * 111.00252 * 123.95661 * 14 13 11 16 16 C 1.50696 * 109.47535 * 168.42900 * 15 14 13 17 17 O 1.21297 * 120.00021 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00059 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00121 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99677 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47004 * 60.00309 * 23 21 19 25 25 H 1.48500 * 109.46951 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47362 * 300.00307 * 23 21 19 27 27 C 1.47137 * 109.24049 * 1.23763 * 14 13 11 28 28 C 1.46708 * 125.58766 * 180.02562 * 8 6 5 29 29 H 1.09000 * 112.08898 * 55.82721 * 28 8 6 30 30 C 1.35376 * 126.13645 * 180.28672 * 2 1 3 31 31 H 1.08998 * 109.47061 * 90.02583 * 1 2 3 32 32 H 1.09002 * 109.46859 * 210.02310 * 1 2 3 33 33 H 1.08998 * 109.47134 * 330.02299 * 1 2 3 34 34 H 1.07996 * 125.49801 * 0.04268 * 3 2 1 35 35 H 1.09002 * 110.36813 * 323.22464 * 9 8 6 36 36 H 1.08991 * 110.36713 * 85.43931 * 9 8 6 37 37 H 1.09006 * 111.90159 * 205.09486 * 10 9 8 38 38 H 1.09004 * 110.92452 * 80.68002 * 10 9 8 39 39 H 1.08992 * 109.74997 * 5.64646 * 13 11 10 40 40 H 1.08999 * 109.74211 * 244.96154 * 13 11 10 41 41 H 1.08999 * 109.46881 * 288.43568 * 15 14 13 42 42 H 1.09000 * 109.46797 * 48.42640 * 15 14 13 43 43 H 0.97004 * 120.00442 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00144 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.99387 * 101.41040 * 27 14 13 46 46 H 1.09001 * 109.99411 * 222.69878 * 27 14 13 47 47 H 1.08002 * 126.56037 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7138 -0.0006 5 6 3.5511 -0.6432 -0.0003 6 6 4.7653 -1.4776 -0.0013 7 8 4.6698 -2.6901 -0.0015 8 7 5.9818 -0.8974 -0.0020 9 6 6.2400 0.5539 -0.0024 10 6 7.6722 0.7143 -0.6254 11 6 8.3866 -0.5310 -0.0365 12 1 9.2625 -0.8355 -0.6093 13 6 8.6976 -0.2540 1.4436 14 7 8.1175 -1.3429 2.2431 15 6 9.1417 -1.9887 3.0749 16 6 8.4761 -2.8949 4.0781 17 8 7.2673 -2.9935 4.0980 18 7 9.2238 -3.5958 4.9533 19 6 8.6183 -4.4207 5.8658 20 1 7.5419 -4.5085 5.8834 21 6 9.3892 -5.1437 6.7677 22 7 10.6987 -5.0366 6.7465 23 14 8.5640 -6.2671 8.0113 24 1 7.7799 -7.3059 7.2963 25 1 9.5995 -6.9204 8.8517 26 1 7.6567 -5.4686 8.8742 27 6 7.4773 -2.3163 1.3444 28 6 7.2660 -1.6066 -0.0036 29 1 7.3499 -2.3008 -0.8397 30 6 2.2634 -1.0933 -0.0055 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9257 2.1221 0.0007 35 1 5.5004 1.0707 -0.6139 36 1 6.2270 0.9418 1.0161 37 1 8.1575 1.6338 -0.2979 38 1 7.6314 0.6626 -1.7134 39 1 8.2561 0.6970 1.7410 40 1 9.7768 -0.2219 1.5932 41 1 9.8076 -2.5747 2.4415 42 1 9.7173 -1.2262 3.5997 43 1 10.1905 -3.5173 4.9372 44 1 11.2369 -5.5411 7.3765 45 1 8.1249 -3.1830 1.2116 46 1 6.5174 -2.6282 1.7559 47 1 1.9421 -2.1244 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187523520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:24 Heat of formation + Delta-G solvation = 24.030706 kcal Electronic energy + Delta-G solvation = -30829.240016 eV Core-core repulsion = 26627.894942 eV Total energy + Delta-G solvation = -4201.345074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35491 -40.52131 -38.40592 -37.64028 -35.31269 -34.36617 -33.71001 -31.88415 -31.13484 -30.24469 -29.74919 -27.82467 -27.08375 -26.34023 -24.23511 -23.90970 -22.09749 -21.57037 -21.05889 -20.09366 -19.25606 -18.91396 -17.79169 -17.44738 -16.73828 -16.14926 -15.94271 -15.66626 -15.27570 -14.89631 -14.58282 -14.49719 -14.23073 -14.13920 -13.97301 -13.73881 -13.61971 -13.22171 -13.20195 -13.18288 -12.81505 -12.57618 -12.06440 -11.99546 -11.82503 -11.64922 -11.41449 -11.10147 -11.00025 -10.82790 -10.73453 -10.69856 -10.36197 -10.22476 -10.11083 -10.00036 -9.79405 -9.37922 -8.84361 -8.36963 -8.29350 -7.85020 -7.68415 -6.31284 -3.71356 1.50162 2.29404 2.36158 3.16714 3.27637 3.31752 3.37137 3.63676 4.04476 4.13636 4.20165 4.26973 4.37168 4.39634 4.51283 4.54372 4.63657 4.79179 4.90991 5.00196 5.15937 5.23663 5.26222 5.29908 5.35469 5.37805 5.59133 5.67786 5.72791 5.78301 5.82500 5.90934 5.94978 5.99622 6.10748 6.13113 6.21063 6.25071 6.42137 6.49815 6.75891 6.85365 7.41944 7.47081 7.56591 7.65154 7.76057 8.17863 8.41116 8.74558 9.29824 9.66857 10.20336 10.86837 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002687 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.532360 B =10418.137595 C =12110.264377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.180 3.820 4 N -0.459 5.459 5 C -0.051 4.051 6 C 0.618 3.382 7 O -0.541 6.541 8 N -0.589 5.589 9 C 0.109 3.891 10 C -0.126 4.126 11 C -0.121 4.121 12 H 0.099 0.901 13 C 0.050 3.950 14 N -0.504 5.504 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.572 6.572 18 N -0.569 5.569 19 C -0.295 4.295 20 H 0.101 0.899 21 C 0.020 3.980 22 N -0.905 5.905 23 Si 0.929 3.071 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.052 3.948 28 C 0.131 3.869 29 H 0.089 0.911 30 C 0.032 3.968 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.210 0.790 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.048 0.952 46 H 0.099 0.901 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 15.865 -18.656 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.103 4.103 4 N -0.178 5.178 5 C -0.180 4.180 6 C 0.406 3.594 7 O -0.418 6.418 8 N -0.321 5.321 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.141 4.141 12 H 0.117 0.883 13 C -0.078 4.078 14 N -0.228 5.228 15 C -0.089 4.089 16 C 0.230 3.770 17 O -0.455 6.455 18 N -0.207 5.207 19 C -0.424 4.424 20 H 0.119 0.881 21 C -0.181 4.181 22 N -0.547 5.547 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.076 4.076 28 C 0.026 3.974 29 H 0.107 0.893 30 C -0.106 4.106 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.227 0.773 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.117 0.883 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.613 15.730 -18.156 27.611 hybrid contribution 0.187 -1.302 0.299 1.349 sum -13.425 14.428 -17.857 26.595 Atomic orbital electron populations 1.22137 0.75904 1.05225 1.03896 1.45327 1.08190 1.06943 1.53968 1.25233 0.85370 0.93537 1.06179 1.70666 1.18976 1.10456 1.17717 1.20477 0.92983 0.90405 1.14095 1.16455 0.80751 0.85974 0.76198 1.90823 1.86203 1.13234 1.51552 1.47874 1.04216 1.07931 1.72080 1.22816 0.96012 0.80772 1.01792 1.23223 0.95403 0.97576 1.00205 1.23296 0.97418 0.95614 0.97737 0.88255 1.22819 0.98438 0.96621 0.89965 1.62722 1.28236 1.10182 1.21633 1.22133 0.93101 0.97699 0.96008 1.19795 0.88047 0.84484 0.84644 1.90538 1.13961 1.67762 1.73262 1.41848 1.08991 1.39515 1.30315 1.19641 0.93952 1.19122 1.09727 0.88100 1.25225 0.95357 0.98671 0.98806 1.69608 1.03989 1.42887 1.38243 0.85939 0.78404 0.79974 0.80016 1.19974 1.21052 1.19973 1.22987 1.01733 0.93170 0.89752 1.22326 0.82568 0.94055 0.98424 0.89320 1.22593 0.90171 0.93220 1.04648 0.90183 0.89229 0.89039 0.77336 0.88477 0.91125 0.89620 0.90995 0.90275 0.92700 0.93374 0.89462 0.77596 0.91982 0.93351 0.88317 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.15 59.85 0.67 0.88 16 2 N -0.46 -3.66 3.13 -125.78 -0.39 -4.05 16 3 C 0.18 1.53 12.55 -89.91 -1.13 0.41 16 4 N -0.46 -5.65 8.37 -11.03 -0.09 -5.74 16 5 C -0.05 -0.73 6.80 -83.09 -0.57 -1.29 16 6 C 0.62 10.62 7.46 -12.57 -0.09 10.53 16 7 O -0.54 -10.92 16.59 5.26 0.09 -10.83 16 8 N -0.59 -9.07 3.01 -162.11 -0.49 -9.56 16 9 C 0.11 1.35 5.73 -1.38 -0.01 1.34 16 10 C -0.13 -1.20 6.46 -23.41 -0.15 -1.35 16 11 C -0.12 -1.39 4.19 -87.82 -0.37 -1.76 16 12 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.05 0.67 6.05 -3.37 -0.02 0.65 16 14 N -0.50 -9.25 4.80 -234.78 -1.13 -10.38 16 15 C 0.04 0.81 5.02 -4.98 -0.02 0.79 16 16 C 0.45 11.28 7.58 -10.99 -0.08 11.20 16 17 O -0.57 -16.75 14.78 5.54 0.08 -16.66 16 18 N -0.57 -15.22 5.29 -10.96 -0.06 -15.28 16 19 C -0.29 -8.62 9.68 -14.93 -0.14 -8.77 16 20 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.91 -25.52 13.05 55.50 0.72 -24.80 16 23 Si 0.93 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.05 0.98 5.27 -3.28 -0.02 0.96 16 28 C 0.13 1.96 3.67 -66.15 -0.24 1.72 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 C 0.03 0.36 11.26 -16.64 -0.19 0.18 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.10 1.16 6.12 -51.93 -0.32 0.84 16 36 H 0.07 0.97 7.49 -51.93 -0.39 0.59 16 37 H 0.09 0.67 7.97 -51.93 -0.41 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.03 6.79 -51.93 -0.35 0.68 16 40 H 0.05 0.65 7.51 -51.93 -0.39 0.26 16 41 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 42 H 0.09 1.51 7.99 -51.93 -0.41 1.09 16 43 H 0.39 9.95 7.90 -40.82 -0.32 9.62 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 46 H 0.10 2.33 6.68 -51.93 -0.35 1.99 16 47 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -38.66 382.47 -9.63 -48.28 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.64 Total: 10.35 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -2.46 Total: 15.95 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.44 Total: -69.82 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: 0.17 Total: -27.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.66 -9.63 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187523520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.313 kcal (2) G-P(sol) polarization free energy of solvation -38.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds