Wall clock time and date at job start Wed Apr 1 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35851 * 126.13185 * 2 1 4 4 N 1.30170 * 108.99919 * 180.02562 * 3 2 1 5 5 C 1.35762 * 108.86857 * 359.97438 * 4 3 2 6 6 C 1.47325 * 126.23314 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99401 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00003 * 0.02855 * 6 5 4 9 9 C 1.47407 * 125.59376 * 359.97438 * 8 6 5 10 10 C 1.57003 * 105.09950 * 204.24009 * 9 8 6 11 11 C 1.55174 * 100.79952 * 323.09222 * 10 9 8 12 12 H 1.09001 * 113.24669 * 158.38943 * 11 10 9 13 13 C 1.53753 * 108.29610 * 284.77690 * 11 10 9 14 14 N 1.47011 * 108.07400 * 125.30835 * 13 11 10 15 15 C 1.46900 * 111.00252 * 123.95661 * 14 13 11 16 16 C 1.50696 * 109.47535 * 168.42900 * 15 14 13 17 17 O 1.21297 * 120.00021 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00059 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00121 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99677 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47004 * 60.00309 * 23 21 19 25 25 H 1.48500 * 109.46951 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47362 * 300.00307 * 23 21 19 27 27 C 1.47137 * 109.24049 * 1.23763 * 14 13 11 28 28 C 1.46708 * 125.58766 * 180.02562 * 8 6 5 29 29 H 1.09000 * 112.08898 * 55.82721 * 28 8 6 30 30 C 1.35376 * 126.13645 * 180.28672 * 2 1 3 31 31 H 1.08998 * 109.47061 * 90.02583 * 1 2 3 32 32 H 1.09002 * 109.46859 * 210.02310 * 1 2 3 33 33 H 1.08998 * 109.47134 * 330.02299 * 1 2 3 34 34 H 1.07996 * 125.49801 * 0.04268 * 3 2 1 35 35 H 1.09002 * 110.36813 * 323.22464 * 9 8 6 36 36 H 1.08991 * 110.36713 * 85.43931 * 9 8 6 37 37 H 1.09006 * 111.90159 * 205.09486 * 10 9 8 38 38 H 1.09004 * 110.92452 * 80.68002 * 10 9 8 39 39 H 1.08992 * 109.74997 * 5.64646 * 13 11 10 40 40 H 1.08999 * 109.74211 * 244.96154 * 13 11 10 41 41 H 1.08999 * 109.46881 * 288.43568 * 15 14 13 42 42 H 1.09000 * 109.46797 * 48.42640 * 15 14 13 43 43 H 0.97004 * 120.00442 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00144 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.99387 * 101.41040 * 27 14 13 46 46 H 1.09001 * 109.99411 * 222.69878 * 27 14 13 47 47 H 1.08002 * 126.56037 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7138 -0.0006 5 6 3.5511 -0.6432 -0.0003 6 6 4.7653 -1.4776 -0.0013 7 8 4.6698 -2.6901 -0.0015 8 7 5.9818 -0.8974 -0.0020 9 6 6.2400 0.5539 -0.0024 10 6 7.6722 0.7143 -0.6254 11 6 8.3866 -0.5310 -0.0365 12 1 9.2625 -0.8355 -0.6093 13 6 8.6976 -0.2540 1.4436 14 7 8.1175 -1.3429 2.2431 15 6 9.1417 -1.9887 3.0749 16 6 8.4761 -2.8949 4.0781 17 8 7.2673 -2.9935 4.0980 18 7 9.2238 -3.5958 4.9533 19 6 8.6183 -4.4207 5.8658 20 1 7.5419 -4.5085 5.8834 21 6 9.3892 -5.1437 6.7677 22 7 10.6987 -5.0366 6.7465 23 14 8.5640 -6.2671 8.0113 24 1 7.7799 -7.3059 7.2963 25 1 9.5995 -6.9204 8.8517 26 1 7.6567 -5.4686 8.8742 27 6 7.4773 -2.3163 1.3444 28 6 7.2660 -1.6066 -0.0036 29 1 7.3499 -2.3008 -0.8397 30 6 2.2634 -1.0933 -0.0055 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9257 2.1221 0.0007 35 1 5.5004 1.0707 -0.6139 36 1 6.2270 0.9418 1.0161 37 1 8.1575 1.6338 -0.2979 38 1 7.6314 0.6626 -1.7134 39 1 8.2561 0.6970 1.7410 40 1 9.7768 -0.2219 1.5932 41 1 9.8076 -2.5747 2.4415 42 1 9.7173 -1.2262 3.5997 43 1 10.1905 -3.5173 4.9372 44 1 11.2369 -5.5411 7.3765 45 1 8.1249 -3.1830 1.2116 46 1 6.5174 -2.6282 1.7559 47 1 1.9421 -2.1244 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187523520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:22 Heat of formation + Delta-G solvation = -5.157042 kcal Electronic energy + Delta-G solvation = -30830.505692 eV Core-core repulsion = 26627.894942 eV Total energy + Delta-G solvation = -4202.610750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.13886 -41.70957 -40.13475 -39.17660 -36.71012 -35.84866 -35.03758 -33.30929 -32.98081 -31.44236 -30.71746 -28.90953 -27.86556 -27.82431 -26.13573 -24.93182 -23.15855 -22.54664 -22.06619 -21.10790 -21.01922 -20.16335 -19.86802 -18.39161 -17.96784 -17.60103 -16.99575 -16.76143 -16.50590 -16.46007 -16.27480 -15.83680 -15.52922 -15.45544 -15.05495 -14.91953 -14.73605 -14.67572 -14.36507 -13.93392 -13.70372 -13.58277 -13.54866 -13.46337 -13.18865 -13.06784 -12.93600 -12.77730 -12.45810 -12.44444 -12.14217 -11.92960 -11.86451 -11.66057 -11.51307 -11.27373 -10.89863 -10.68687 -10.31886 -10.02281 -9.84696 -9.47916 -9.13551 -8.47842 -5.96616 0.54726 1.37138 1.37811 1.47045 1.49485 1.71779 2.05241 2.13658 2.27328 2.51892 2.82357 3.17197 3.22491 3.38660 3.51239 3.53218 3.79490 3.86126 3.99179 4.15229 4.18090 4.22363 4.29261 4.31426 4.37834 4.45385 4.48196 4.49227 4.54674 4.60558 4.74484 4.75250 4.90439 4.95557 5.03039 5.06963 5.14039 5.22444 5.32273 5.36643 5.38400 5.56762 5.88475 6.03660 6.15311 6.21359 6.55204 6.60781 6.79478 7.12201 7.20288 7.55401 8.13524 8.69538 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002687 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.532360 B =10418.137595 C =12110.264377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.454 5.454 3 C 0.196 3.804 4 N -0.487 5.487 5 C -0.092 4.092 6 C 0.602 3.398 7 O -0.592 6.592 8 N -0.592 5.592 9 C 0.107 3.893 10 C -0.108 4.108 11 C -0.104 4.104 12 H 0.131 0.869 13 C 0.047 3.953 14 N -0.529 5.529 15 C 0.056 3.944 16 C 0.437 3.563 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.335 4.335 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.265 1.265 26 H -0.272 1.272 27 C 0.061 3.939 28 C 0.126 3.874 29 H 0.089 0.911 30 C 0.032 3.968 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.257 0.743 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.587 18.554 -19.641 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.134 5.134 3 C -0.088 4.088 4 N -0.207 5.207 5 C -0.220 4.220 6 C 0.392 3.608 7 O -0.474 6.474 8 N -0.323 5.323 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.124 4.124 12 H 0.149 0.851 13 C -0.079 4.079 14 N -0.253 5.253 15 C -0.075 4.075 16 C 0.224 3.776 17 O -0.507 6.507 18 N -0.213 5.213 19 C -0.464 4.464 20 H 0.090 0.910 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.189 1.189 26 H -0.198 1.198 27 C -0.068 4.068 28 C 0.021 3.979 29 H 0.107 0.893 30 C -0.110 4.110 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.273 0.727 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.172 18.479 -19.155 29.696 hybrid contribution -0.064 -2.091 0.633 2.185 sum -13.236 16.388 -18.523 28.051 Atomic orbital electron populations 1.22531 0.72709 1.06836 1.05635 1.45598 1.09929 1.05616 1.52279 1.26143 0.84391 0.95202 1.03104 1.70562 1.21388 1.09255 1.19469 1.20302 0.92731 0.91510 1.17461 1.17104 0.82287 0.85911 0.75491 1.90761 1.87146 1.15386 1.54100 1.48055 1.03862 1.09351 1.70986 1.22935 0.98467 0.78803 1.01219 1.23250 0.92619 0.97717 1.01018 1.23337 0.97014 0.94980 0.97062 0.85076 1.22960 0.99894 0.94648 0.90428 1.62539 1.29083 1.10836 1.22884 1.22011 0.92972 0.97476 0.95035 1.20968 0.87658 0.84203 0.84749 1.90515 1.16383 1.69234 1.74526 1.41904 1.09248 1.39657 1.30472 1.19568 0.93112 1.21659 1.12072 0.91000 1.26015 0.96020 0.99286 0.99850 1.69660 1.04718 1.42999 1.38640 0.85015 0.77873 0.77922 0.77649 1.20011 1.18930 1.19752 1.22685 0.98539 0.93749 0.91841 1.22400 0.84191 0.95414 0.95886 0.89267 1.22685 0.90022 0.94411 1.03850 0.88325 0.88853 0.86296 0.72746 0.87950 0.92900 0.86587 0.89150 0.89586 0.89936 0.91052 0.86585 0.76915 0.91216 0.94601 0.94486 0.79256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.22 11.15 127.77 1.42 1.65 16 2 N -0.45 -6.56 3.13 -551.84 -1.73 -8.28 16 3 C 0.20 2.94 12.55 180.10 2.26 5.21 16 4 N -0.49 -11.91 8.37 -188.82 -1.58 -13.49 16 5 C -0.09 -2.79 6.80 40.50 0.28 -2.52 16 6 C 0.60 22.57 7.46 86.63 0.65 23.21 16 7 O -0.59 -26.65 16.59 -4.10 -0.07 -26.72 16 8 N -0.59 -19.12 3.01 -785.06 -2.37 -21.49 16 9 C 0.11 2.60 5.73 87.61 0.50 3.10 16 10 C -0.11 -1.70 6.46 32.74 0.21 -1.49 16 11 C -0.10 -2.12 4.19 -8.98 -0.04 -2.16 16 12 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 13 C 0.05 1.15 6.05 86.54 0.52 1.68 16 14 N -0.53 -19.62 4.80 -896.69 -4.31 -23.93 16 15 C 0.06 2.15 5.02 85.56 0.43 2.58 16 16 C 0.44 23.07 7.58 87.66 0.66 23.74 16 17 O -0.62 -38.84 14.78 -3.08 -0.05 -38.89 16 18 N -0.57 -31.80 5.29 -306.99 -1.62 -33.42 16 19 C -0.33 -20.34 9.68 84.04 0.81 -19.53 16 20 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 22 N -0.92 -51.59 13.05 21.66 0.28 -51.30 16 23 Si 0.99 45.35 29.55 68.60 2.03 47.38 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.06 2.45 5.27 86.53 0.46 2.91 16 28 C 0.13 3.87 3.67 46.03 0.17 4.04 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 C 0.03 0.75 11.26 83.72 0.94 1.69 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.10 2.38 6.12 -2.39 -0.01 2.36 16 36 H 0.05 1.46 7.49 -2.39 -0.02 1.44 16 37 H 0.12 1.22 7.97 -2.38 -0.02 1.20 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 2.01 6.79 -2.39 -0.02 1.99 16 40 H 0.08 1.61 7.51 -2.39 -0.02 1.59 16 41 H 0.07 2.42 7.82 -2.39 -0.02 2.40 16 42 H 0.12 3.77 7.99 -2.39 -0.02 3.75 16 43 H 0.40 20.54 7.90 -92.71 -0.73 19.81 16 44 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.04 1.47 7.51 -2.39 -0.02 1.46 16 46 H 0.04 1.94 6.68 -2.39 -0.02 1.92 16 47 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -93.32 382.47 0.62 -92.69 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.28 Total: 33.54 kcal Atomic # 6 Polarization: 34.15 SS G_CDS: 9.75 Total: 43.90 kcal Atomic # 7 Polarization: -140.59 SS G_CDS: -11.32 Total: -151.91 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -0.11 Total: -65.60 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -93.32 0.62 -92.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187523520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.536 kcal (2) G-P(sol) polarization free energy of solvation -93.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds