Wall clock time and date at job start Wed Apr 1 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34496 * 126.47224 * 2 1 4 4 N 1.30851 * 109.16721 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.68436 * 0.02562 * 4 3 2 6 6 C 1.36663 * 107.78579 * 359.97438 * 5 4 3 7 7 C 1.46760 * 126.84651 * 179.97438 * 6 5 4 8 8 O 1.21683 * 120.00363 * 186.46247 * 7 6 5 9 9 N 1.34781 * 119.99915 * 6.45886 * 7 6 5 10 10 C 1.46721 * 125.24163 * 5.72680 * 9 7 6 11 11 C 1.54039 * 106.53341 * 160.81709 * 10 9 7 12 12 C 1.53890 * 103.86234 * 28.03299 * 11 10 9 13 13 H 1.09007 * 111.74742 * 96.19952 * 12 11 10 14 14 C 1.53563 * 110.01624 * 220.92052 * 12 11 10 15 15 N 1.47911 * 106.89772 * 118.33796 * 14 12 11 16 16 C 1.46900 * 110.99628 * 211.75846 * 15 14 12 17 17 C 1.50697 * 109.47193 * 170.00427 * 16 15 14 18 18 O 1.21292 * 119.99900 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00148 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00014 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00155 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99917 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47313 * 59.99862 * 24 22 20 26 26 H 1.48498 * 109.46849 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47216 * 299.99381 * 24 22 20 28 28 C 1.48328 * 105.72138 * 332.21201 * 15 14 12 29 29 C 1.46781 * 125.23961 * 185.41701 * 9 7 6 30 30 H 1.09000 * 112.20190 * 58.43382 * 29 9 7 31 31 H 1.08996 * 109.47338 * 85.13806 * 1 2 3 32 32 H 1.09002 * 109.46568 * 205.14182 * 1 2 3 33 33 H 1.09002 * 109.46970 * 325.13161 * 1 2 3 34 34 H 1.08002 * 125.41922 * 359.97438 * 3 2 1 35 35 H 1.08000 * 126.11141 * 179.97438 * 5 4 3 36 36 H 1.08999 * 110.04733 * 280.08641 * 10 9 7 37 37 H 1.09003 * 110.04680 * 41.54899 * 10 9 7 38 38 H 1.08998 * 110.54995 * 146.62420 * 11 10 9 39 39 H 1.08995 * 110.55289 * 269.44068 * 11 10 9 40 40 H 1.08997 * 109.97515 * 237.69966 * 14 12 11 41 41 H 1.08997 * 109.97014 * 358.93702 * 14 12 11 42 42 H 1.09002 * 109.47358 * 290.00373 * 16 15 14 43 43 H 1.09006 * 109.47302 * 49.99914 * 16 15 14 44 44 H 0.97003 * 119.99816 * 359.97438 * 19 17 16 45 45 H 0.96993 * 120.00009 * 179.97438 * 23 22 20 46 46 H 1.09006 * 110.52600 * 157.23840 * 28 15 14 47 47 H 1.09003 * 110.52946 * 279.85158 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6923 -0.0006 5 6 3.5691 -0.6397 -0.0015 6 6 2.2863 -1.1108 -0.0009 7 6 1.8650 -2.5167 -0.0021 8 8 0.6872 -2.7989 -0.1201 9 7 2.7827 -3.4953 0.1273 10 6 4.2103 -3.2872 0.3947 11 6 4.7540 -4.6229 0.9362 12 6 3.8362 -5.6805 0.2980 13 1 4.2743 -6.1027 -0.6064 14 6 3.4944 -6.7689 1.3259 15 7 2.0272 -6.7399 1.5111 16 6 1.6621 -7.1205 2.8822 17 6 0.1975 -6.8458 3.1067 18 8 -0.4758 -6.3784 2.2126 19 7 -0.3639 -7.1184 4.3012 20 6 -1.6965 -6.8690 4.5052 21 1 -2.2962 -6.4536 3.7089 22 6 -2.2754 -7.1505 5.7366 23 7 -1.5458 -7.6564 6.7055 24 14 -4.0910 -6.8100 6.0148 25 1 -4.8965 -7.6012 5.0503 26 1 -4.4601 -7.1953 7.4006 27 1 -4.3596 -5.3633 5.8146 28 6 1.6126 -5.3463 1.2180 29 6 2.5067 -4.9336 0.0289 30 1 2.0690 -5.2042 -0.9320 31 1 -0.3634 0.0871 -1.0239 32 1 -0.3632 -0.9304 0.4366 33 1 -0.3633 0.8432 0.5875 34 1 1.9288 2.1081 -0.0004 35 1 4.4673 -1.2395 -0.0025 36 1 4.7277 -3.0191 -0.5263 37 1 4.3404 -2.5017 1.1391 38 1 5.7866 -4.7718 0.6203 39 1 4.6769 -4.6551 2.0229 40 1 3.8032 -7.7449 0.9514 41 1 3.9940 -6.5581 2.2714 42 1 1.8593 -8.1824 3.0293 43 1 2.2535 -6.5398 3.5902 44 1 0.1747 -7.4918 5.0163 45 1 -1.9499 -7.8526 7.5651 46 1 0.5599 -5.3117 0.9371 47 1 1.7990 -4.7031 2.0781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188464337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:08 Heat of formation + Delta-G solvation = 29.802408 kcal Electronic energy + Delta-G solvation = -31251.610556 eV Core-core repulsion = 27050.515762 eV Total energy + Delta-G solvation = -4201.094794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.46083 -40.70375 -38.67422 -37.83109 -35.81822 -34.23356 -33.87118 -32.26974 -31.31795 -30.82734 -29.62956 -27.57013 -27.31456 -26.48978 -24.28903 -24.12301 -22.17430 -21.88728 -21.06645 -20.15965 -19.44153 -19.11612 -17.83898 -17.63315 -16.75657 -16.42867 -16.05777 -15.79968 -15.66960 -15.14389 -14.69915 -14.53706 -14.41001 -14.17803 -13.97443 -13.91612 -13.55019 -13.45393 -13.12531 -12.97745 -12.91242 -12.86126 -12.41890 -12.13039 -11.88827 -11.82699 -11.53177 -11.28048 -11.02106 -10.99100 -10.78410 -10.62471 -10.56919 -10.40369 -10.20307 -9.98534 -9.90701 -9.47014 -8.90514 -8.73585 -8.37194 -7.99664 -7.86884 -6.40920 -3.81464 1.13831 2.20082 2.63967 2.97583 3.19128 3.20665 3.26007 3.30831 3.90822 3.98241 4.12412 4.21295 4.33657 4.35760 4.53984 4.56691 4.66263 4.80793 4.90489 4.97873 4.98992 5.07376 5.14410 5.18360 5.25947 5.34371 5.39320 5.42715 5.50644 5.63846 5.67772 5.77829 5.80510 5.85600 5.94430 6.03011 6.13551 6.21480 6.27317 6.33559 6.78226 6.78329 7.16954 7.29334 7.35245 7.56394 7.62574 8.04716 8.07025 8.62948 9.19156 9.54618 10.07032 10.76846 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003104 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.162106 B = 9017.399038 C =10950.277838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.426 5.426 3 C 0.202 3.798 4 N -0.499 5.499 5 C 0.021 3.979 6 C -0.078 4.078 7 C 0.604 3.396 8 O -0.526 6.526 9 N -0.600 5.600 10 C 0.091 3.909 11 C -0.127 4.127 12 C -0.104 4.104 13 H 0.098 0.902 14 C 0.039 3.961 15 N -0.494 5.494 16 C 0.038 3.962 17 C 0.440 3.560 18 O -0.575 6.575 19 N -0.562 5.562 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.040 3.960 29 C 0.140 3.860 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.212 0.788 35 H 0.186 0.814 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.126 0.874 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 11.444 -11.690 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.105 5.105 3 C -0.080 4.080 4 N -0.217 5.217 5 C -0.133 4.133 6 C -0.195 4.195 7 C 0.392 3.608 8 O -0.403 6.403 9 N -0.333 5.333 10 C -0.032 4.032 11 C -0.165 4.165 12 C -0.123 4.123 13 H 0.117 0.883 14 C -0.089 4.089 15 N -0.219 5.219 16 C -0.094 4.094 17 C 0.226 3.774 18 O -0.460 6.460 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.088 4.088 29 C 0.037 3.963 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.203 0.797 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.144 0.856 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.831 11.757 -12.488 22.033 hybrid contribution -0.796 0.014 1.389 1.601 sum 13.035 11.771 -11.098 20.776 Atomic orbital electron populations 1.22361 0.74944 1.06306 1.04220 1.45282 1.08518 1.05717 1.51032 1.25137 0.85633 0.93640 1.03599 1.70167 1.19049 1.12189 1.20324 1.23201 0.95702 0.91342 1.03026 1.20728 0.91553 0.88806 1.18397 1.16362 0.84738 0.82514 0.77184 1.90876 1.16118 1.83344 1.49930 1.47833 1.08311 1.06049 1.71146 1.22423 0.81199 0.98956 1.00587 1.22596 0.99632 0.93076 1.01221 1.22600 0.94713 0.95459 0.99573 0.88337 1.22980 0.89821 0.98750 0.97338 1.64598 1.09614 1.23952 1.23725 1.22096 0.96265 1.01853 0.89159 1.19721 0.88573 0.85108 0.84011 1.90476 1.63675 1.48980 1.42835 1.41830 1.10418 1.56213 1.11435 1.19658 0.84918 1.39572 0.98635 0.87960 1.25253 1.00353 0.97056 0.95241 1.69603 1.36819 1.43868 1.04121 0.85924 0.82142 0.78986 0.77215 1.19838 1.20970 1.19957 1.23634 1.03040 0.87167 0.94988 1.22420 0.95631 0.77702 1.00559 0.88434 0.89938 0.87301 0.89345 0.77148 0.79693 0.90809 0.89903 0.89369 0.90363 0.90037 0.93421 0.89028 0.93447 0.77500 0.91839 0.85620 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.76 59.85 0.64 1.23 16 2 N -0.43 -4.80 3.17 -121.98 -0.39 -5.19 16 3 C 0.20 1.98 12.52 -90.58 -1.13 0.84 16 4 N -0.50 -5.92 11.20 -14.43 -0.16 -6.08 16 5 C 0.02 0.24 10.21 -17.48 -0.18 0.06 16 6 C -0.08 -1.01 6.85 -82.15 -0.56 -1.57 16 7 C 0.60 9.11 7.62 -12.81 -0.10 9.01 16 8 O -0.53 -9.80 14.71 5.20 0.08 -9.73 16 9 N -0.60 -7.70 2.93 -164.66 -0.48 -8.18 16 10 C 0.09 0.79 5.04 -3.38 -0.02 0.77 16 11 C -0.13 -1.00 6.48 -25.73 -0.17 -1.17 16 12 C -0.10 -1.05 3.87 -88.89 -0.34 -1.39 16 13 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 14 C 0.04 0.47 6.27 -2.98 -0.02 0.45 16 15 N -0.49 -8.37 5.28 -232.70 -1.23 -9.60 16 16 C 0.04 0.69 5.52 -4.98 -0.03 0.67 16 17 C 0.44 10.63 7.49 -10.99 -0.08 10.55 16 18 O -0.58 -15.82 13.11 5.55 0.07 -15.75 16 19 N -0.56 -14.51 5.29 -10.97 -0.06 -14.57 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 24 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.04 0.72 4.20 -2.31 -0.01 0.71 16 29 C 0.14 1.94 3.89 -66.08 -0.26 1.68 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 1.35 6.38 -51.93 -0.33 1.02 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.19 1.60 4.70 -52.49 -0.25 1.35 16 36 H 0.07 0.49 7.46 -51.93 -0.39 0.10 16 37 H 0.08 0.68 6.28 -51.93 -0.33 0.36 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.68 7.33 -51.93 -0.38 0.30 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.53 6.67 -51.93 -0.35 0.18 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.13 2.90 5.99 -51.93 -0.31 2.59 16 47 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -36.07 374.45 -9.68 -45.74 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.36 Total: 11.67 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -2.49 Total: 13.77 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -1.59 Total: -67.72 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.15 Total: -25.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.07 -9.68 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188464337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.546 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds