Wall clock time and date at job start Wed Apr 1 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34496 * 126.47224 * 2 1 4 4 N 1.30851 * 109.16721 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.68436 * 0.02562 * 4 3 2 6 6 C 1.36663 * 107.78579 * 359.97438 * 5 4 3 7 7 C 1.46760 * 126.84651 * 179.97438 * 6 5 4 8 8 O 1.21683 * 120.00363 * 186.46247 * 7 6 5 9 9 N 1.34781 * 119.99915 * 6.45886 * 7 6 5 10 10 C 1.46721 * 125.24163 * 5.72680 * 9 7 6 11 11 C 1.54039 * 106.53341 * 160.81709 * 10 9 7 12 12 C 1.53890 * 103.86234 * 28.03299 * 11 10 9 13 13 H 1.09007 * 111.74742 * 96.19952 * 12 11 10 14 14 C 1.53563 * 110.01624 * 220.92052 * 12 11 10 15 15 N 1.47911 * 106.89772 * 118.33796 * 14 12 11 16 16 C 1.46900 * 110.99628 * 211.75846 * 15 14 12 17 17 C 1.50697 * 109.47193 * 170.00427 * 16 15 14 18 18 O 1.21292 * 119.99900 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00148 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00014 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00155 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99917 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47313 * 59.99862 * 24 22 20 26 26 H 1.48498 * 109.46849 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47216 * 299.99381 * 24 22 20 28 28 C 1.48328 * 105.72138 * 332.21201 * 15 14 12 29 29 C 1.46781 * 125.23961 * 185.41701 * 9 7 6 30 30 H 1.09000 * 112.20190 * 58.43382 * 29 9 7 31 31 H 1.08996 * 109.47338 * 85.13806 * 1 2 3 32 32 H 1.09002 * 109.46568 * 205.14182 * 1 2 3 33 33 H 1.09002 * 109.46970 * 325.13161 * 1 2 3 34 34 H 1.08002 * 125.41922 * 359.97438 * 3 2 1 35 35 H 1.08000 * 126.11141 * 179.97438 * 5 4 3 36 36 H 1.08999 * 110.04733 * 280.08641 * 10 9 7 37 37 H 1.09003 * 110.04680 * 41.54899 * 10 9 7 38 38 H 1.08998 * 110.54995 * 146.62420 * 11 10 9 39 39 H 1.08995 * 110.55289 * 269.44068 * 11 10 9 40 40 H 1.08997 * 109.97515 * 237.69966 * 14 12 11 41 41 H 1.08997 * 109.97014 * 358.93702 * 14 12 11 42 42 H 1.09002 * 109.47358 * 290.00373 * 16 15 14 43 43 H 1.09006 * 109.47302 * 49.99914 * 16 15 14 44 44 H 0.97003 * 119.99816 * 359.97438 * 19 17 16 45 45 H 0.96993 * 120.00009 * 179.97438 * 23 22 20 46 46 H 1.09006 * 110.52600 * 157.23840 * 28 15 14 47 47 H 1.09003 * 110.52946 * 279.85158 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6923 -0.0006 5 6 3.5691 -0.6397 -0.0015 6 6 2.2863 -1.1108 -0.0009 7 6 1.8650 -2.5167 -0.0021 8 8 0.6872 -2.7989 -0.1201 9 7 2.7827 -3.4953 0.1273 10 6 4.2103 -3.2872 0.3947 11 6 4.7540 -4.6229 0.9362 12 6 3.8362 -5.6805 0.2980 13 1 4.2743 -6.1027 -0.6064 14 6 3.4944 -6.7689 1.3259 15 7 2.0272 -6.7399 1.5111 16 6 1.6621 -7.1205 2.8822 17 6 0.1975 -6.8458 3.1067 18 8 -0.4758 -6.3784 2.2126 19 7 -0.3639 -7.1184 4.3012 20 6 -1.6965 -6.8690 4.5052 21 1 -2.2962 -6.4536 3.7089 22 6 -2.2754 -7.1505 5.7366 23 7 -1.5458 -7.6564 6.7055 24 14 -4.0910 -6.8100 6.0148 25 1 -4.8965 -7.6012 5.0503 26 1 -4.4601 -7.1953 7.4006 27 1 -4.3596 -5.3633 5.8146 28 6 1.6126 -5.3463 1.2180 29 6 2.5067 -4.9336 0.0289 30 1 2.0690 -5.2042 -0.9320 31 1 -0.3634 0.0871 -1.0239 32 1 -0.3632 -0.9304 0.4366 33 1 -0.3633 0.8432 0.5875 34 1 1.9288 2.1081 -0.0004 35 1 4.4673 -1.2395 -0.0025 36 1 4.7277 -3.0191 -0.5263 37 1 4.3404 -2.5017 1.1391 38 1 5.7866 -4.7718 0.6203 39 1 4.6769 -4.6551 2.0229 40 1 3.8032 -7.7449 0.9514 41 1 3.9940 -6.5581 2.2714 42 1 1.8593 -8.1824 3.0293 43 1 2.2535 -6.5398 3.5902 44 1 0.1747 -7.4918 5.0163 45 1 -1.9499 -7.8526 7.5651 46 1 0.5599 -5.3117 0.9371 47 1 1.7990 -4.7031 2.0781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188464337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:07 Heat of formation + Delta-G solvation = 1.998064 kcal Electronic energy + Delta-G solvation = -31252.816243 eV Core-core repulsion = 27050.515762 eV Total energy + Delta-G solvation = -4202.300481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.31607 -41.77185 -40.28190 -39.24562 -37.06886 -35.94209 -35.04012 -33.44598 -33.24296 -31.88231 -30.70393 -28.64645 -28.22474 -27.93035 -26.09648 -25.09108 -23.05808 -22.88198 -22.17860 -21.22053 -20.85193 -20.44792 -19.88072 -18.58186 -17.82137 -17.56653 -17.35781 -16.97210 -16.76356 -16.54258 -16.36497 -16.00917 -15.59479 -15.43456 -15.24156 -15.10226 -14.67118 -14.58021 -14.27221 -14.13817 -13.91318 -13.72401 -13.66284 -13.53214 -13.32537 -13.05761 -12.94308 -12.91717 -12.48904 -12.47905 -12.17404 -11.88546 -11.82726 -11.59530 -11.53837 -11.46164 -10.99601 -10.80296 -10.23926 -10.06006 -9.89797 -9.67790 -9.31963 -8.51380 -6.00249 0.22010 1.33741 1.34791 1.36388 1.47766 1.77011 1.99271 2.07530 2.19539 2.24750 2.83141 3.13807 3.17881 3.31696 3.52258 3.59316 3.66649 3.71342 3.87521 4.02633 4.10225 4.11544 4.22866 4.26594 4.30432 4.34525 4.38989 4.44328 4.49226 4.58858 4.62521 4.68764 4.76751 4.88396 4.99310 5.03235 5.09798 5.19964 5.27047 5.35431 5.36796 5.41359 5.77834 5.90420 6.02484 6.08810 6.33567 6.56129 6.77295 6.98831 7.08254 7.49851 8.07608 8.65958 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003104 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.162106 B = 9017.399038 C =10950.277838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.436 5.436 3 C 0.219 3.781 4 N -0.525 5.525 5 C 0.038 3.962 6 C -0.114 4.114 7 C 0.593 3.407 8 O -0.582 6.582 9 N -0.598 5.598 10 C 0.082 3.918 11 C -0.118 4.118 12 C -0.089 4.089 13 H 0.131 0.869 14 C 0.038 3.962 15 N -0.513 5.513 16 C 0.051 3.949 17 C 0.433 3.567 18 O -0.616 6.616 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.265 1.265 27 H -0.274 1.274 28 C 0.053 3.947 29 C 0.139 3.861 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.255 0.745 35 H 0.211 0.789 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.279 0.721 46 H 0.063 0.937 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.054 12.213 -11.705 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.116 5.116 3 C -0.063 4.063 4 N -0.243 5.243 5 C -0.116 4.116 6 C -0.231 4.231 7 C 0.383 3.617 8 O -0.463 6.463 9 N -0.331 5.331 10 C -0.039 4.039 11 C -0.155 4.155 12 C -0.109 4.109 13 H 0.149 0.851 14 C -0.089 4.089 15 N -0.238 5.238 16 C -0.081 4.081 17 C 0.221 3.779 18 O -0.502 6.502 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.189 1.189 27 H -0.200 1.200 28 C -0.076 4.076 29 C 0.035 3.965 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.271 0.729 35 H 0.227 0.773 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.085 0.915 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 17.102 12.504 -12.485 24.591 hybrid contribution -1.783 -0.176 1.363 2.252 sum 15.319 12.328 -11.122 22.591 Atomic orbital electron populations 1.22383 0.74374 1.05645 1.05198 1.45501 1.09112 1.05802 1.51164 1.26037 0.84956 0.94760 1.00505 1.70239 1.20075 1.12216 1.21796 1.23610 0.95708 0.91505 1.00800 1.20642 0.92721 0.88174 1.21518 1.16861 0.84380 0.83932 0.76518 1.90846 1.18460 1.84312 1.52718 1.47944 1.09987 1.05154 1.69969 1.22786 0.78628 1.00053 1.02389 1.22655 1.01171 0.91073 1.00631 1.22656 0.92708 0.94894 1.00606 0.85068 1.23183 0.86092 1.00792 0.98883 1.64537 1.13623 1.22908 1.22704 1.21996 0.91685 1.03661 0.90730 1.20869 0.91060 0.83226 0.82793 1.90491 1.65587 1.50156 1.43990 1.41890 1.09850 1.56868 1.12268 1.19584 0.86313 1.41756 0.98887 0.90817 1.26021 1.04456 0.96161 0.94401 1.69657 1.38346 1.43509 1.04407 0.85019 0.76970 0.78657 0.77862 1.19694 1.18947 1.19982 1.23187 1.00680 0.87919 0.95810 1.22313 0.97274 0.79153 0.97738 0.89968 0.88917 0.91251 0.85837 0.72930 0.77258 0.87694 0.89340 0.85078 0.91089 0.87731 0.91804 0.86443 0.91499 0.76943 0.91152 0.91879 0.96986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.76 127.77 1.37 2.64 16 2 N -0.44 -9.76 3.17 -539.82 -1.71 -11.47 16 3 C 0.22 3.83 12.52 180.33 2.26 6.09 16 4 N -0.53 -11.33 11.20 -199.56 -2.24 -13.56 16 5 C 0.04 0.80 10.21 84.10 0.86 1.66 16 6 C -0.11 -3.00 6.85 40.01 0.27 -2.73 16 7 C 0.59 19.13 7.62 86.47 0.66 19.79 16 8 O -0.58 -24.29 14.71 -4.29 -0.06 -24.35 16 9 N -0.60 -15.58 2.93 -793.07 -2.33 -17.90 16 10 C 0.08 1.21 5.04 86.69 0.44 1.64 16 11 C -0.12 -1.36 6.48 31.25 0.20 -1.16 16 12 C -0.09 -1.53 3.87 -9.67 -0.04 -1.57 16 13 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 14 C 0.04 0.79 6.27 86.30 0.54 1.33 16 15 N -0.51 -17.49 5.28 -890.13 -4.70 -22.19 16 16 C 0.05 1.86 5.52 85.56 0.47 2.33 16 17 C 0.43 22.04 7.49 87.66 0.66 22.70 16 18 O -0.62 -36.69 13.11 -3.07 -0.04 -36.73 16 19 N -0.57 -30.83 5.29 -306.99 -1.62 -32.45 16 20 C -0.34 -19.99 9.68 84.04 0.81 -19.18 16 21 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 24 Si 0.99 44.48 29.55 68.60 2.03 46.50 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 28 C 0.05 2.06 4.20 86.50 0.36 2.42 16 29 C 0.14 3.95 3.89 46.04 0.18 4.12 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.95 6.38 -2.39 -0.02 1.93 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.25 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.21 3.02 4.70 -2.91 -0.01 3.00 16 36 H 0.11 0.95 7.46 -2.39 -0.02 0.93 16 37 H 0.09 1.23 6.28 -2.39 -0.01 1.22 16 38 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.97 7.33 -2.39 -0.02 0.95 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.18 6.67 -2.39 -0.02 1.16 16 42 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.07 2.20 7.81 -2.38 -0.02 2.18 16 44 H 0.40 20.12 7.90 -92.71 -0.73 19.39 16 45 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.06 3.26 5.99 -2.38 -0.01 3.24 16 47 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 Total: -1.00 -87.83 374.45 -0.58 -88.40 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.29 Total: 34.20 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: 9.52 Total: 39.98 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -12.31 Total: -148.01 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -0.10 Total: -61.08 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -87.83 -0.58 -88.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188464337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.401 kcal (2) G-P(sol) polarization free energy of solvation -87.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds