Wall clock time and date at job start Wed Apr 1 2020 04:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47023 * 2 1 4 4 C 1.46493 * 119.99924 * 269.99800 * 3 2 1 5 5 C 1.50698 * 109.47280 * 269.99804 * 4 3 2 6 6 H 1.07998 * 119.99888 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00375 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99678 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00404 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47099 * 60.00055 * 9 7 5 11 11 H 1.48499 * 109.47286 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47189 * 300.00040 * 9 7 5 13 13 C 1.34780 * 119.99612 * 89.99937 * 3 2 1 14 14 O 1.21283 * 119.99379 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00330 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.46900 * 111.00477 * 293.95430 * 16 15 13 18 18 C 1.46906 * 110.99815 * 169.99994 * 16 15 13 19 19 H 1.09000 * 110.88636 * 62.01705 * 18 16 15 20 20 C 1.55159 * 111.00358 * 298.14155 * 18 16 15 21 21 C 1.54373 * 102.92125 * 206.45412 * 20 18 16 22 22 N 1.47024 * 107.28391 * 22.13403 * 21 20 18 23 23 C 1.34783 * 125.64330 * 181.05395 * 22 21 20 24 24 O 1.21283 * 119.99892 * 180.02562 * 23 22 21 25 25 C 1.50702 * 119.99903 * 0.05053 * 23 22 21 26 26 F 1.39900 * 109.46580 * 184.99757 * 25 23 22 27 27 F 1.39905 * 109.46979 * 304.99332 * 25 23 22 28 28 C 1.47422 * 108.70833 * 1.09771 * 22 21 20 29 29 H 1.08998 * 109.47340 * 59.99893 * 1 2 3 30 30 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47038 * 300.00042 * 1 2 3 32 32 H 1.08998 * 109.47173 * 239.99749 * 2 1 3 33 33 H 1.09004 * 109.46686 * 119.99961 * 2 1 3 34 34 H 1.08999 * 109.47441 * 30.00138 * 4 3 2 35 35 H 1.09003 * 109.46929 * 150.00392 * 4 3 2 36 36 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46897 * 299.99797 * 15 13 3 38 38 H 1.08999 * 109.47074 * 60.00085 * 15 13 3 39 39 H 1.08994 * 109.46848 * 65.78608 * 17 16 15 40 40 H 1.08993 * 109.47162 * 185.79047 * 17 16 15 41 41 H 1.09002 * 109.46607 * 305.79056 * 17 16 15 42 42 H 1.09008 * 110.72055 * 324.78548 * 20 18 16 43 43 H 1.08999 * 110.72385 * 88.05679 * 20 18 16 44 44 H 1.09000 * 109.84399 * 262.72993 * 21 20 18 45 45 H 1.08996 * 110.02784 * 141.64568 * 21 20 18 46 46 H 1.08999 * 109.47515 * 64.99558 * 25 23 22 47 47 H 1.08999 * 110.36770 * 217.03448 * 28 22 21 48 48 H 1.09003 * 110.36612 * 94.70412 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4174 10 1 6.1403 0.6389 -3.5946 11 1 6.1607 2.7957 -4.7034 12 1 6.8410 2.6190 -2.3828 13 6 2.2429 2.0165 1.1673 14 8 2.6476 3.1599 1.1672 15 6 1.9923 1.3059 2.4724 16 7 2.3109 2.2058 3.5889 17 6 3.7477 2.5097 3.6267 18 6 1.8588 1.6397 4.8668 19 1 2.3672 0.6986 5.0765 20 6 0.3183 1.4542 4.8789 21 6 -0.0275 1.5370 6.3812 22 7 1.0690 2.2593 7.0427 23 6 1.1533 2.5218 8.3620 24 8 2.1078 3.1285 8.7998 25 6 0.0616 2.0609 9.2932 26 9 0.3126 2.5451 10.5815 27 9 -1.1707 2.5476 8.8440 28 6 2.0605 2.6496 6.0239 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1383 36 1 3.6749 3.5155 -4.4443 37 1 0.9444 1.0114 2.5303 38 1 2.6228 0.4187 2.5299 39 1 4.0213 3.0824 2.7407 40 1 3.9723 3.0925 4.5199 41 1 4.3153 1.5794 3.6476 42 1 -0.1710 2.2562 4.3260 43 1 0.0438 0.4809 4.4724 44 1 -0.1141 0.5331 6.7968 45 1 -0.9639 2.0774 6.5194 46 1 0.0367 0.9714 9.3129 47 1 3.0702 2.5685 6.4265 48 1 1.8694 3.6656 5.6783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188520729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:53 Heat of formation + Delta-G solvation = -145.911821 kcal Electronic energy + Delta-G solvation = -31431.202557 eV Core-core repulsion = 26771.799036 eV Total energy + Delta-G solvation = -4659.403521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.62446 -47.65024 -40.58638 -39.39654 -38.20003 -36.02185 -35.12782 -32.83339 -31.61098 -30.19118 -29.98834 -28.63851 -27.75662 -26.69710 -24.75656 -23.23862 -23.04046 -22.37637 -20.65232 -20.40795 -18.72272 -18.33374 -18.18668 -17.73067 -17.03349 -16.56895 -16.29981 -16.26175 -15.68359 -15.31172 -14.95883 -14.48706 -14.47238 -14.36415 -14.20397 -14.03992 -13.92897 -13.75299 -13.50819 -13.37010 -13.28889 -12.96441 -12.69481 -12.58275 -12.51691 -12.25901 -12.01176 -11.79929 -11.55360 -11.31581 -11.27397 -11.26478 -11.07030 -10.94938 -10.73649 -10.54747 -10.42879 -10.13775 -9.67243 -9.25947 -8.97545 -8.45318 -8.29280 -7.67798 -6.06334 -4.11279 1.66947 1.97780 3.18912 3.29229 3.34294 3.34753 3.41553 3.42824 3.50790 4.00619 4.05959 4.11499 4.20110 4.22687 4.42774 4.57495 4.82384 4.87692 4.98732 5.08483 5.18046 5.27638 5.29634 5.33990 5.39685 5.43890 5.51474 5.56017 5.58371 5.61531 5.65509 5.74407 5.81827 5.96397 6.17935 6.33016 6.42285 6.71736 6.82039 6.98191 7.09784 7.28579 7.43610 7.53341 7.90090 8.21434 8.40930 8.88311 9.10131 9.53919 11.01588 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.002117 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.062913 B =13222.728527 C =14010.602304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.036 3.964 16 N -0.511 5.511 17 C 0.015 3.985 18 C 0.069 3.931 19 H 0.059 0.941 20 C -0.127 4.127 21 C 0.091 3.909 22 N -0.603 5.603 23 C 0.486 3.514 24 O -0.502 6.502 25 C 0.263 3.737 26 F -0.175 7.175 27 F -0.186 7.186 28 C 0.115 3.885 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.022 0.978 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.083 0.917 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -10.223 21.314 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.095 4.095 16 N -0.235 5.235 17 C -0.132 4.132 18 C -0.041 4.041 19 H 0.077 0.923 20 C -0.165 4.165 21 C -0.031 4.031 22 N -0.338 5.338 23 C 0.270 3.730 24 O -0.376 6.376 25 C 0.206 3.794 26 F -0.156 7.156 27 F -0.167 7.167 28 C -0.007 4.007 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.153 0.847 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.650 -8.672 21.377 25.006 hybrid contribution 1.237 -1.034 -0.263 1.633 sum -8.413 -9.705 21.115 24.714 Atomic orbital electron populations 1.22226 0.96777 1.01339 1.02395 1.21404 0.93520 0.84365 1.02522 1.48261 1.64103 1.13138 1.07702 1.19241 0.96140 0.93663 0.78038 1.21374 0.96946 1.31948 1.06242 0.92669 1.24933 0.97788 0.94946 0.96428 1.69921 1.35706 1.33342 1.14330 0.86576 0.84866 0.78194 0.77868 1.20312 1.21174 1.20208 1.20049 0.79003 0.87088 0.84636 1.90646 1.44771 1.17725 1.86728 1.22127 1.02399 0.94192 0.90737 1.61663 1.18226 1.43294 1.00322 1.22649 0.85607 1.00239 1.04717 1.22775 0.95670 0.95838 0.89811 0.92272 1.22781 0.95365 1.04126 0.94183 1.22343 0.90482 0.96747 0.93573 1.48355 1.24066 1.55776 1.05608 1.20672 0.88478 0.81604 0.82272 1.90842 1.32841 1.38839 1.75059 1.21538 0.79848 0.99090 0.78922 1.93071 1.94012 1.90500 1.38045 1.93053 1.44308 1.90368 1.88990 1.22342 0.92427 0.99631 0.86259 0.91948 0.92234 0.93092 0.89968 0.92057 0.95097 0.93866 0.92652 0.88402 0.92441 0.88127 0.91673 0.95966 0.88582 0.89456 0.90794 0.89708 0.84678 0.89885 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.60 -11.85 2.46 -175.06 -0.43 -12.28 16 4 C 0.25 6.26 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 9.77 7.43 -10.98 -0.08 9.69 16 14 O -0.52 -12.43 13.89 5.55 0.08 -12.36 16 15 C 0.04 0.48 3.88 -4.98 -0.02 0.46 16 16 N -0.51 -6.55 4.40 -233.75 -1.03 -7.58 16 17 C 0.02 0.21 9.09 60.06 0.55 0.76 16 18 C 0.07 0.63 2.71 -65.56 -0.18 0.45 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.13 -0.86 5.34 -24.87 -0.13 -0.99 16 21 C 0.09 0.52 6.16 -3.04 -0.02 0.50 16 22 N -0.60 -5.23 3.33 -170.49 -0.57 -5.79 16 23 C 0.49 4.90 7.68 -10.98 -0.08 4.81 16 24 O -0.50 -7.17 16.88 5.55 0.09 -7.08 16 25 C 0.26 1.85 5.17 36.01 0.19 2.04 16 26 F -0.18 -1.71 16.95 2.25 0.04 -1.67 16 27 F -0.19 -1.42 15.89 2.25 0.04 -1.38 16 28 C 0.12 1.14 5.34 -2.53 -0.01 1.13 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.55 7.22 -51.93 -0.38 0.18 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.05 5.80 -51.93 -0.30 0.75 16 38 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 39 H 0.10 1.78 6.00 -51.93 -0.31 1.47 16 40 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 41 H 0.02 0.28 8.06 -51.93 -0.42 -0.14 16 42 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.09 0.43 7.88 -51.93 -0.41 0.02 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.45 7.26 -51.93 -0.38 0.08 16 46 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -35.24 393.95 -7.40 -42.64 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -7.38 Total: -3.24 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 0.11 Total: 11.77 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -1.29 Total: -51.12 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.17 Total: -19.43 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.24 -7.40 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188520729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.277 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds