Wall clock time and date at job start Wed Apr 1 2020 04:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47023 * 2 1 4 4 C 1.46493 * 119.99924 * 269.99800 * 3 2 1 5 5 C 1.50698 * 109.47280 * 269.99804 * 4 3 2 6 6 H 1.07998 * 119.99888 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00375 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99678 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00404 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47099 * 60.00055 * 9 7 5 11 11 H 1.48499 * 109.47286 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47189 * 300.00040 * 9 7 5 13 13 C 1.34780 * 119.99612 * 89.99937 * 3 2 1 14 14 O 1.21283 * 119.99379 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00330 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.46900 * 111.00477 * 293.95430 * 16 15 13 18 18 C 1.46906 * 110.99815 * 169.99994 * 16 15 13 19 19 H 1.09000 * 110.88636 * 62.01705 * 18 16 15 20 20 C 1.55159 * 111.00358 * 298.14155 * 18 16 15 21 21 C 1.54373 * 102.92125 * 206.45412 * 20 18 16 22 22 N 1.47024 * 107.28391 * 22.13403 * 21 20 18 23 23 C 1.34783 * 125.64330 * 181.05395 * 22 21 20 24 24 O 1.21283 * 119.99892 * 180.02562 * 23 22 21 25 25 C 1.50702 * 119.99903 * 0.05053 * 23 22 21 26 26 F 1.39900 * 109.46580 * 184.99757 * 25 23 22 27 27 F 1.39905 * 109.46979 * 304.99332 * 25 23 22 28 28 C 1.47422 * 108.70833 * 1.09771 * 22 21 20 29 29 H 1.08998 * 109.47340 * 59.99893 * 1 2 3 30 30 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47038 * 300.00042 * 1 2 3 32 32 H 1.08998 * 109.47173 * 239.99749 * 2 1 3 33 33 H 1.09004 * 109.46686 * 119.99961 * 2 1 3 34 34 H 1.08999 * 109.47441 * 30.00138 * 4 3 2 35 35 H 1.09003 * 109.46929 * 150.00392 * 4 3 2 36 36 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46897 * 299.99797 * 15 13 3 38 38 H 1.08999 * 109.47074 * 60.00085 * 15 13 3 39 39 H 1.08994 * 109.46848 * 65.78608 * 17 16 15 40 40 H 1.08993 * 109.47162 * 185.79047 * 17 16 15 41 41 H 1.09002 * 109.46607 * 305.79056 * 17 16 15 42 42 H 1.09008 * 110.72055 * 324.78548 * 20 18 16 43 43 H 1.08999 * 110.72385 * 88.05679 * 20 18 16 44 44 H 1.09000 * 109.84399 * 262.72993 * 21 20 18 45 45 H 1.08996 * 110.02784 * 141.64568 * 21 20 18 46 46 H 1.08999 * 109.47515 * 64.99558 * 25 23 22 47 47 H 1.08999 * 110.36770 * 217.03448 * 28 22 21 48 48 H 1.09003 * 110.36612 * 94.70412 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4174 10 1 6.1403 0.6389 -3.5946 11 1 6.1607 2.7957 -4.7034 12 1 6.8410 2.6190 -2.3828 13 6 2.2429 2.0165 1.1673 14 8 2.6476 3.1599 1.1672 15 6 1.9923 1.3059 2.4724 16 7 2.3109 2.2058 3.5889 17 6 3.7477 2.5097 3.6267 18 6 1.8588 1.6397 4.8668 19 1 2.3672 0.6986 5.0765 20 6 0.3183 1.4542 4.8789 21 6 -0.0275 1.5370 6.3812 22 7 1.0690 2.2593 7.0427 23 6 1.1533 2.5218 8.3620 24 8 2.1078 3.1285 8.7998 25 6 0.0616 2.0609 9.2932 26 9 0.3126 2.5451 10.5815 27 9 -1.1707 2.5476 8.8440 28 6 2.0605 2.6496 6.0239 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1383 36 1 3.6749 3.5155 -4.4443 37 1 0.9444 1.0114 2.5303 38 1 2.6228 0.4187 2.5299 39 1 4.0213 3.0824 2.7407 40 1 3.9723 3.0925 4.5199 41 1 4.3153 1.5794 3.6476 42 1 -0.1710 2.2562 4.3260 43 1 0.0438 0.4809 4.4724 44 1 -0.1141 0.5331 6.7968 45 1 -0.9639 2.0774 6.5194 46 1 0.0367 0.9714 9.3129 47 1 3.0702 2.5685 6.4265 48 1 1.8694 3.6656 5.6783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188520729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:43 Heat of formation + Delta-G solvation = -171.790019 kcal Electronic energy + Delta-G solvation = -31432.324720 eV Core-core repulsion = 26771.799036 eV Total energy + Delta-G solvation = -4660.525684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.20930 -48.25152 -41.38067 -40.70995 -39.15697 -37.15648 -36.49721 -34.88340 -32.36707 -31.59654 -30.82304 -29.76977 -28.55331 -28.22463 -25.94542 -24.60176 -23.97392 -23.67582 -21.41867 -21.12347 -19.77348 -19.32656 -18.78419 -18.60473 -18.36500 -18.02108 -17.54397 -17.12293 -16.94685 -16.46384 -16.23278 -15.91327 -15.40950 -15.11993 -15.03386 -14.95298 -14.87379 -14.59919 -14.55983 -14.41718 -14.18058 -14.03471 -13.86561 -13.71084 -13.49863 -13.27202 -13.15653 -13.10498 -13.03504 -12.67950 -12.62202 -12.47238 -12.28247 -12.11257 -11.90835 -11.86443 -11.76928 -11.69273 -11.17696 -10.63279 -10.47765 -9.94072 -9.37660 -9.29375 -8.20951 -6.35709 0.94152 1.31771 1.35856 1.40062 1.47122 1.93202 2.25121 2.41189 2.65531 2.95743 2.99543 3.08268 3.36937 3.54811 3.59696 3.71024 3.77083 4.02488 4.12522 4.18218 4.27260 4.32367 4.38953 4.47487 4.50202 4.52623 4.61346 4.72416 4.75890 4.83368 4.88518 4.99104 5.04088 5.06083 5.10934 5.15270 5.23585 5.26292 5.46118 5.60844 5.81536 5.92603 6.08441 6.09346 6.10642 6.57561 6.73100 6.89890 7.31036 7.60806 8.85442 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.002117 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.062913 B =13222.728527 C =14010.602304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.494 3.506 14 O -0.581 6.581 15 C 0.054 3.946 16 N -0.531 5.531 17 C 0.023 3.977 18 C 0.075 3.925 19 H 0.082 0.918 20 C -0.122 4.122 21 C 0.089 3.911 22 N -0.598 5.598 23 C 0.478 3.522 24 O -0.558 6.558 25 C 0.269 3.731 26 F -0.194 7.194 27 F -0.188 7.188 28 C 0.114 3.886 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.195 0.805 47 H 0.072 0.928 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -14.159 22.997 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.076 4.076 16 N -0.256 5.256 17 C -0.125 4.125 18 C -0.034 4.034 19 H 0.099 0.901 20 C -0.160 4.160 21 C -0.033 4.033 22 N -0.331 5.331 23 C 0.263 3.737 24 O -0.436 6.436 25 C 0.213 3.787 26 F -0.175 7.175 27 F -0.169 7.169 28 C -0.009 4.009 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.212 0.788 47 H 0.090 0.910 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.874 -12.680 23.064 28.477 hybrid contribution 1.553 0.244 -0.801 1.764 sum -9.321 -12.436 22.263 27.151 Atomic orbital electron populations 1.22162 0.94383 1.03537 1.01810 1.21758 0.95468 0.81277 1.03827 1.48289 1.64333 1.15119 1.06097 1.18624 0.95028 0.91414 0.80626 1.21675 0.97965 1.31761 1.06330 0.92907 1.25859 1.02245 0.94618 0.96591 1.70050 1.37766 1.34288 1.14787 0.85508 0.79222 0.79031 0.77287 1.18351 1.20551 1.20453 1.21238 0.77424 0.86703 0.86355 1.90628 1.47151 1.20602 1.87733 1.22028 1.04947 0.93650 0.86987 1.61514 1.17444 1.44610 1.02054 1.22443 0.86909 1.00353 1.02824 1.22795 0.97726 0.95749 0.87109 0.90074 1.22840 0.92815 1.05385 0.94993 1.22627 0.89368 0.98558 0.92710 1.48447 1.24362 1.55195 1.05138 1.21355 0.88669 0.80772 0.82863 1.90815 1.35283 1.41394 1.76141 1.21895 0.78263 1.01579 0.76964 1.93034 1.94106 1.91026 1.39306 1.93050 1.44186 1.90747 1.88945 1.22201 0.92512 0.98981 0.87227 0.94742 0.88521 0.91536 0.91426 0.87961 0.96239 0.98873 0.92505 0.84798 0.89873 0.92814 0.90767 0.94647 0.90235 0.86056 0.86680 0.89084 0.78836 0.90983 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 71.98 0.74 -2.61 16 2 C 0.10 2.66 5.93 86.38 0.51 3.18 16 3 N -0.61 -24.17 2.46 -826.16 -2.03 -26.20 16 4 C 0.26 14.06 5.16 85.63 0.44 14.51 16 5 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 9 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.49 19.18 7.43 87.66 0.65 19.84 16 14 O -0.58 -29.27 13.89 -3.04 -0.04 -29.31 16 15 C 0.05 1.28 3.88 85.56 0.33 1.61 16 16 N -0.53 -12.91 4.40 -893.44 -3.93 -16.84 16 17 C 0.02 0.63 9.09 127.69 1.16 1.79 16 18 C 0.07 1.14 2.71 46.31 0.13 1.27 16 19 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 20 C -0.12 -1.11 5.34 31.80 0.17 -0.94 16 21 C 0.09 0.61 6.16 86.75 0.53 1.14 16 22 N -0.60 -9.01 3.33 -811.69 -2.70 -11.71 16 23 C 0.48 8.94 7.68 87.66 0.67 9.61 16 24 O -0.56 -16.20 16.88 -3.04 -0.05 -16.25 16 25 C 0.27 3.00 5.17 71.24 0.37 3.37 16 26 F -0.19 -3.49 16.95 44.97 0.76 -2.73 16 27 F -0.19 -2.32 15.89 44.97 0.71 -1.60 16 28 C 0.11 2.16 5.34 86.86 0.46 2.62 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.18 7.22 -2.38 -0.02 1.16 16 32 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.10 1.93 6.44 -2.38 -0.02 1.91 16 34 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 35 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.13 2.20 5.80 -2.39 -0.01 2.19 16 38 H 0.08 1.60 7.32 -2.39 -0.02 1.58 16 39 H 0.05 2.02 6.00 -2.39 -0.01 2.01 16 40 H 0.07 1.84 6.70 -2.39 -0.02 1.83 16 41 H 0.04 0.86 8.06 -2.39 -0.02 0.84 16 42 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.12 0.35 7.88 -2.39 -0.02 0.33 16 44 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.09 0.59 7.26 -2.39 -0.02 0.57 16 46 H 0.20 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -86.29 393.95 2.88 -83.41 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.97 Total: 4.77 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 6.87 Total: 25.74 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -8.37 Total: -110.81 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.09 Total: -45.57 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 1.48 Total: -4.33 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -86.29 2.88 -83.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188520729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.375 kcal (2) G-P(sol) polarization free energy of solvation -86.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds