Wall clock time and date at job start Wed Apr 1 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47039 * 2 1 4 4 C 1.46494 * 119.99989 * 269.99458 * 3 2 1 5 5 C 1.50703 * 109.47309 * 270.00339 * 4 3 2 6 6 H 1.07999 * 120.00030 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46890 * 120.00587 * 9 7 5 12 12 H 1.48504 * 109.46816 * 239.99842 * 9 7 5 13 13 C 1.34777 * 119.99978 * 89.99847 * 3 2 1 14 14 O 1.21279 * 119.99796 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00226 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47286 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00072 * 293.95614 * 16 15 13 18 18 C 1.46900 * 110.99924 * 169.99986 * 16 15 13 19 19 H 1.08999 * 110.88767 * 62.42848 * 18 16 15 20 20 C 1.55154 * 111.03778 * 186.33439 * 18 16 15 21 21 C 1.54326 * 103.02450 * 153.39588 * 20 18 16 22 22 N 1.47030 * 107.26510 * 338.14173 * 21 20 18 23 23 C 1.34772 * 125.65035 * 178.85097 * 22 21 20 24 24 O 1.21279 * 120.00099 * 179.69458 * 23 22 21 25 25 C 1.50706 * 120.00061 * 359.68631 * 23 22 21 26 26 F 1.39900 * 109.46715 * 55.00193 * 25 23 22 27 27 F 1.39897 * 109.47068 * 175.00103 * 25 23 22 28 28 C 1.47421 * 108.69954 * 358.58210 * 22 21 20 29 29 H 1.09007 * 109.47043 * 60.00200 * 1 2 3 30 30 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47573 * 300.00388 * 1 2 3 32 32 H 1.08998 * 109.47065 * 239.99695 * 2 1 3 33 33 H 1.09002 * 109.46591 * 119.99819 * 2 1 3 34 34 H 1.09006 * 109.47310 * 30.00309 * 4 3 2 35 35 H 1.09005 * 109.47610 * 150.00235 * 4 3 2 36 36 H 0.97003 * 119.99196 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46809 * 60.00184 * 15 13 3 38 38 H 1.08996 * 109.47180 * 300.00206 * 15 13 3 39 39 H 1.09003 * 109.47312 * 296.04273 * 17 16 15 40 40 H 1.08999 * 109.47119 * 56.04715 * 17 16 15 41 41 H 1.09002 * 109.47148 * 176.04247 * 17 16 15 42 42 H 1.09005 * 110.72028 * 271.95925 * 20 18 16 43 43 H 1.09003 * 110.72023 * 35.04780 * 20 18 16 44 44 H 1.08996 * 109.99738 * 218.66778 * 21 20 18 45 45 H 1.08998 * 109.78276 * 97.49230 * 21 20 18 46 46 H 1.09000 * 109.47161 * 295.00348 * 25 23 22 47 47 H 1.09001 * 110.36336 * 143.19682 * 28 22 21 48 48 H 1.08999 * 110.37040 * 265.40501 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9137 2.0965 -3.4166 10 1 6.6013 1.2413 -2.4162 11 1 5.9217 1.4169 -4.7370 12 1 6.6206 3.3979 -3.5255 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3100 2.2062 3.5889 17 6 3.7470 2.5089 3.6272 18 6 1.8569 1.6406 4.8667 19 1 2.3697 0.7028 5.0802 20 6 2.0489 2.6556 6.0243 21 6 0.9659 2.2340 7.0397 22 7 -0.0577 1.4821 6.2990 23 6 -1.1614 0.9225 6.8329 24 8 -1.9437 0.3272 6.1227 25 6 -1.4233 1.0363 8.3127 26 9 -1.4109 2.3845 8.6861 27 9 -2.6731 0.4818 8.6090 28 6 0.3199 1.4472 4.8744 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6754 3.5160 -4.4440 37 1 2.6211 0.4187 2.5303 38 1 0.9431 1.0126 2.5299 39 1 4.3060 1.5937 3.8222 40 1 4.0560 2.9263 2.6689 41 1 3.9451 3.2314 4.4190 42 1 3.0446 2.5623 6.4579 43 1 1.8750 3.6741 5.6771 44 1 0.5191 3.1171 7.4964 45 1 1.4077 1.6000 7.8084 46 1 -0.6487 0.5002 8.8611 47 1 0.0565 0.4848 4.4356 48 1 -0.1688 2.2569 4.3324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188520730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:58 Heat of formation + Delta-G solvation = -145.873930 kcal Electronic energy + Delta-G solvation = -31604.408599 eV Core-core repulsion = 26945.006721 eV Total energy + Delta-G solvation = -4659.401878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.61996 -47.64537 -40.58584 -39.38069 -38.19673 -36.01514 -35.10677 -32.82621 -31.62612 -30.10063 -29.90346 -28.65496 -27.98597 -26.59047 -24.44410 -23.62135 -23.00750 -22.21782 -20.63456 -20.43648 -18.77349 -18.27773 -18.15993 -17.70602 -17.03106 -16.54017 -16.28386 -16.22500 -15.66842 -15.41278 -14.79978 -14.65063 -14.46566 -14.35222 -14.25518 -14.04086 -13.93457 -13.58363 -13.52766 -13.32920 -13.28448 -12.99756 -12.65219 -12.59280 -12.51297 -12.11168 -11.94608 -11.82639 -11.59216 -11.38657 -11.26808 -11.24923 -11.06072 -10.90001 -10.70834 -10.54786 -10.41546 -10.13033 -9.62632 -9.25129 -8.95411 -8.45191 -8.30473 -7.65528 -6.05660 -4.10390 1.67603 1.98568 3.18498 3.27672 3.34584 3.37289 3.42308 3.42607 3.54105 3.97850 4.08135 4.14022 4.18266 4.24806 4.43315 4.58246 4.82069 4.88296 5.01003 5.08490 5.20457 5.27099 5.29230 5.34426 5.43743 5.45980 5.52793 5.57050 5.61446 5.62933 5.67274 5.79109 5.80776 6.03155 6.22323 6.29527 6.48176 6.72441 6.82007 6.98667 7.11406 7.29238 7.45319 7.55180 7.91087 8.22513 8.42759 8.89606 9.11170 9.54778 11.02364 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002244 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.603526 B =12473.853445 C =13313.911800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.032 3.968 16 N -0.510 5.510 17 C 0.020 3.980 18 C 0.069 3.931 19 H 0.060 0.940 20 C -0.122 4.122 21 C 0.091 3.909 22 N -0.603 5.603 23 C 0.486 3.514 24 O -0.501 6.501 25 C 0.263 3.737 26 F -0.186 7.186 27 F -0.175 7.175 28 C 0.111 3.889 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.019 0.981 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.083 0.917 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -6.548 24.827 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.099 4.099 16 N -0.235 5.235 17 C -0.128 4.128 18 C -0.040 4.040 19 H 0.077 0.923 20 C -0.160 4.160 21 C -0.032 4.032 22 N -0.338 5.338 23 C 0.269 3.731 24 O -0.374 6.374 25 C 0.206 3.794 26 F -0.167 7.167 27 F -0.156 7.156 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.153 0.847 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.337 -5.723 24.213 25.447 hybrid contribution 1.299 -0.948 -0.204 1.621 sum -4.038 -6.671 24.009 25.244 Atomic orbital electron populations 1.22229 0.96706 1.01460 1.02423 1.21411 0.93568 0.84293 1.02524 1.48263 1.63971 1.13181 1.07703 1.19262 0.96189 0.93682 0.78069 1.21452 0.96921 1.31763 1.06187 0.92552 1.24942 0.97799 0.94983 0.96437 1.69946 1.35552 1.33460 1.14322 0.86459 0.84705 0.78019 0.78308 1.19890 1.20995 1.20881 1.20019 0.78967 0.87060 0.84623 1.90639 1.44943 1.17663 1.86740 1.22169 1.02375 0.94379 0.91008 1.61651 1.18305 1.43239 1.00280 1.22584 0.85422 0.99481 1.05263 1.22783 0.94080 0.96618 0.90561 0.92254 1.22706 0.98200 1.01048 0.94028 1.22349 0.88870 0.96506 0.95441 1.48340 1.22152 1.52898 1.10398 1.20672 0.81596 0.80860 0.89927 1.90846 1.44764 1.41017 1.60807 1.21537 0.85622 0.78417 0.93822 1.93050 1.96800 1.34477 1.92416 1.93071 1.44078 1.84832 1.93623 1.22400 0.94511 1.03600 0.80581 0.91932 0.92166 0.93072 0.89924 0.92051 0.95061 0.93837 0.92774 0.92343 0.88544 0.96234 0.88298 0.91416 0.89513 0.88610 0.89721 0.90815 0.84694 0.89894 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.22 2.46 -175.06 -0.43 -12.65 16 4 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 5 C -0.52 -14.57 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.04 7.36 -10.99 -0.08 9.96 16 14 O -0.52 -12.52 13.91 5.56 0.08 -12.45 16 15 C 0.03 0.44 3.88 -4.98 -0.02 0.42 16 16 N -0.51 -6.57 4.40 -233.75 -1.03 -7.60 16 17 C 0.02 0.26 9.01 60.06 0.54 0.80 16 18 C 0.07 0.64 2.71 -65.56 -0.18 0.46 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.12 -0.83 5.39 -24.90 -0.13 -0.97 16 21 C 0.09 0.52 6.15 -3.06 -0.02 0.50 16 22 N -0.60 -5.24 3.33 -170.51 -0.57 -5.81 16 23 C 0.49 4.91 7.68 -10.98 -0.08 4.83 16 24 O -0.50 -7.16 16.88 5.56 0.09 -7.07 16 25 C 0.26 1.86 5.17 36.01 0.19 2.05 16 26 F -0.19 -1.43 15.89 2.25 0.04 -1.39 16 27 F -0.18 -1.71 16.95 2.25 0.04 -1.68 16 28 C 0.11 1.10 5.32 -2.53 -0.01 1.09 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 38 H 0.10 1.20 5.72 -51.93 -0.30 0.90 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.70 5.83 -51.93 -0.30 1.40 16 41 H 0.07 0.73 7.21 -51.93 -0.37 0.36 16 42 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.45 7.27 -51.93 -0.38 0.07 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -35.25 394.45 -7.43 -42.68 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.41 Total: -2.82 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 0.11 Total: 11.91 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -1.29 Total: -51.69 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.17 Total: -19.52 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.07 Total: -3.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.25 -7.43 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188520730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.199 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds