Wall clock time and date at job start Wed Apr 1 2020 04:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47039 * 2 1 4 4 C 1.46494 * 119.99989 * 269.99458 * 3 2 1 5 5 C 1.50703 * 109.47309 * 270.00339 * 4 3 2 6 6 H 1.07999 * 120.00030 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46890 * 120.00587 * 9 7 5 12 12 H 1.48504 * 109.46816 * 239.99842 * 9 7 5 13 13 C 1.34777 * 119.99978 * 89.99847 * 3 2 1 14 14 O 1.21279 * 119.99796 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00226 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47286 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00072 * 293.95614 * 16 15 13 18 18 C 1.46900 * 110.99924 * 169.99986 * 16 15 13 19 19 H 1.08999 * 110.88767 * 62.42848 * 18 16 15 20 20 C 1.55154 * 111.03778 * 186.33439 * 18 16 15 21 21 C 1.54326 * 103.02450 * 153.39588 * 20 18 16 22 22 N 1.47030 * 107.26510 * 338.14173 * 21 20 18 23 23 C 1.34772 * 125.65035 * 178.85097 * 22 21 20 24 24 O 1.21279 * 120.00099 * 179.69458 * 23 22 21 25 25 C 1.50706 * 120.00061 * 359.68631 * 23 22 21 26 26 F 1.39900 * 109.46715 * 55.00193 * 25 23 22 27 27 F 1.39897 * 109.47068 * 175.00103 * 25 23 22 28 28 C 1.47421 * 108.69954 * 358.58210 * 22 21 20 29 29 H 1.09007 * 109.47043 * 60.00200 * 1 2 3 30 30 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47573 * 300.00388 * 1 2 3 32 32 H 1.08998 * 109.47065 * 239.99695 * 2 1 3 33 33 H 1.09002 * 109.46591 * 119.99819 * 2 1 3 34 34 H 1.09006 * 109.47310 * 30.00309 * 4 3 2 35 35 H 1.09005 * 109.47610 * 150.00235 * 4 3 2 36 36 H 0.97003 * 119.99196 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46809 * 60.00184 * 15 13 3 38 38 H 1.08996 * 109.47180 * 300.00206 * 15 13 3 39 39 H 1.09003 * 109.47312 * 296.04273 * 17 16 15 40 40 H 1.08999 * 109.47119 * 56.04715 * 17 16 15 41 41 H 1.09002 * 109.47148 * 176.04247 * 17 16 15 42 42 H 1.09005 * 110.72028 * 271.95925 * 20 18 16 43 43 H 1.09003 * 110.72023 * 35.04780 * 20 18 16 44 44 H 1.08996 * 109.99738 * 218.66778 * 21 20 18 45 45 H 1.08998 * 109.78276 * 97.49230 * 21 20 18 46 46 H 1.09000 * 109.47161 * 295.00348 * 25 23 22 47 47 H 1.09001 * 110.36336 * 143.19682 * 28 22 21 48 48 H 1.08999 * 110.37040 * 265.40501 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6180 9 14 5.9137 2.0965 -3.4166 10 1 6.6013 1.2413 -2.4162 11 1 5.9217 1.4169 -4.7370 12 1 6.6206 3.3979 -3.5255 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3100 2.2062 3.5889 17 6 3.7470 2.5089 3.6272 18 6 1.8569 1.6406 4.8667 19 1 2.3697 0.7028 5.0802 20 6 2.0489 2.6556 6.0243 21 6 0.9659 2.2340 7.0397 22 7 -0.0577 1.4821 6.2990 23 6 -1.1614 0.9225 6.8329 24 8 -1.9437 0.3272 6.1227 25 6 -1.4233 1.0363 8.3127 26 9 -1.4109 2.3845 8.6861 27 9 -2.6731 0.4818 8.6090 28 6 0.3199 1.4472 4.8744 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6754 3.5160 -4.4440 37 1 2.6211 0.4187 2.5303 38 1 0.9431 1.0126 2.5299 39 1 4.3060 1.5937 3.8222 40 1 4.0560 2.9263 2.6689 41 1 3.9451 3.2314 4.4190 42 1 3.0446 2.5623 6.4579 43 1 1.8750 3.6741 5.6771 44 1 0.5191 3.1171 7.4964 45 1 1.4077 1.6000 7.8084 46 1 -0.6487 0.5002 8.8611 47 1 0.0565 0.4848 4.4356 48 1 -0.1688 2.2569 4.3324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188520730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:57 Heat of formation + Delta-G solvation = -171.432348 kcal Electronic energy + Delta-G solvation = -31605.516895 eV Core-core repulsion = 26945.006721 eV Total energy + Delta-G solvation = -4660.510174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.20554 -48.24776 -41.39466 -40.73203 -39.15801 -37.18534 -36.51072 -34.90141 -32.42579 -31.61414 -30.61781 -29.98360 -28.65364 -28.23818 -25.60357 -24.75696 -24.28434 -23.55162 -21.36427 -21.17622 -19.85028 -19.28600 -18.78596 -18.61916 -18.35839 -18.04255 -17.50661 -17.17680 -16.93305 -16.48019 -16.23672 -15.93713 -15.60905 -15.09178 -15.03292 -14.93481 -14.83534 -14.65344 -14.56587 -14.37140 -14.21726 -14.09279 -13.89845 -13.66732 -13.50580 -13.31504 -13.14321 -13.13736 -12.86248 -12.71989 -12.63138 -12.47959 -12.44203 -12.15807 -11.94404 -11.86522 -11.82607 -11.66422 -11.15997 -10.64995 -10.49539 -9.93995 -9.41139 -9.30763 -8.21826 -6.36761 0.95091 1.33003 1.36107 1.38179 1.49961 1.87988 2.20855 2.40294 2.66133 2.95997 2.98109 3.07602 3.36176 3.54462 3.60174 3.71148 3.72074 4.01470 4.06358 4.15516 4.25102 4.28138 4.31741 4.42642 4.51978 4.55062 4.61092 4.68753 4.74975 4.83712 4.87880 4.92119 4.96972 5.05020 5.05405 5.16177 5.22379 5.26393 5.36558 5.59154 5.81093 5.89930 6.07289 6.07395 6.13108 6.58289 6.71799 6.84468 7.29716 7.55111 8.85366 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002244 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.603526 B =12473.853445 C =13313.911800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.497 3.503 14 O -0.575 6.575 15 C 0.048 3.952 16 N -0.531 5.531 17 C 0.027 3.973 18 C 0.075 3.925 19 H 0.081 0.919 20 C -0.117 4.117 21 C 0.090 3.910 22 N -0.598 5.598 23 C 0.479 3.521 24 O -0.555 6.555 25 C 0.268 3.732 26 F -0.189 7.189 27 F -0.193 7.193 28 C 0.109 3.891 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.018 0.982 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.194 0.806 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -8.622 27.927 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.142 3.858 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.285 3.715 14 O -0.455 6.455 15 C -0.082 4.082 16 N -0.256 5.256 17 C -0.121 4.121 18 C -0.034 4.034 19 H 0.099 0.901 20 C -0.155 4.155 21 C -0.032 4.032 22 N -0.331 5.331 23 C 0.264 3.736 24 O -0.433 6.433 25 C 0.212 3.788 26 F -0.170 7.170 27 F -0.174 7.174 28 C -0.014 4.014 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.036 0.964 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.211 0.789 47 H 0.097 0.903 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.869 -7.818 27.359 28.716 hybrid contribution 0.807 -0.235 -1.166 1.437 sum -3.062 -8.053 26.194 27.574 Atomic orbital electron populations 1.22162 0.94943 1.03382 1.01533 1.21710 0.94990 0.81555 1.03860 1.48294 1.64283 1.15011 1.06303 1.18665 0.95267 0.91434 0.80418 1.21709 0.97741 1.31715 1.06375 0.92783 1.25891 1.02433 0.94557 0.96507 1.70075 1.37737 1.34359 1.14833 0.85351 0.78989 0.77982 0.78373 1.18893 1.19624 1.20804 1.21111 0.77458 0.86725 0.86166 1.90613 1.47041 1.20178 1.87671 1.22019 1.03876 0.94259 0.88076 1.61541 1.18429 1.44044 1.01573 1.22428 0.85701 1.00643 1.03281 1.22814 0.93205 0.98114 0.89243 0.90120 1.22729 1.00064 0.99397 0.93331 1.22602 0.87744 0.97314 0.95507 1.48424 1.22371 1.52252 1.10096 1.21316 0.81071 0.80007 0.91191 1.90818 1.46520 1.43542 1.62395 1.21899 0.86105 0.78685 0.92106 1.93047 1.96795 1.34981 1.92170 1.93035 1.45746 1.85124 1.93526 1.22287 0.95109 1.02468 0.81510 0.94323 0.88742 0.92487 0.90918 0.88293 0.96405 0.98697 0.92485 0.89935 0.86732 0.94362 0.93155 0.89300 0.86892 0.90309 0.89109 0.86848 0.78935 0.90295 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 3.07 5.93 86.38 0.51 3.58 16 3 N -0.61 -25.57 2.46 -826.15 -2.03 -27.59 16 4 C 0.26 14.36 5.16 85.64 0.44 14.80 16 5 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 9 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.50 20.20 7.36 87.66 0.65 20.85 16 14 O -0.58 -29.16 13.91 -3.03 -0.04 -29.21 16 15 C 0.05 1.29 3.88 85.56 0.33 1.63 16 16 N -0.53 -12.97 4.40 -893.45 -3.93 -16.90 16 17 C 0.03 0.67 9.01 127.69 1.15 1.82 16 18 C 0.07 1.16 2.71 46.31 0.13 1.29 16 19 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 20 C -0.12 -1.20 5.39 31.78 0.17 -1.03 16 21 C 0.09 0.67 6.15 86.73 0.53 1.20 16 22 N -0.60 -8.92 3.33 -811.78 -2.70 -11.62 16 23 C 0.48 8.81 7.68 87.66 0.67 9.49 16 24 O -0.55 -15.74 16.88 -3.03 -0.05 -15.79 16 25 C 0.27 3.00 5.17 71.24 0.37 3.37 16 26 F -0.19 -2.35 15.89 44.97 0.71 -1.64 16 27 F -0.19 -3.47 16.95 44.97 0.76 -2.71 16 28 C 0.11 2.00 5.32 86.86 0.46 2.46 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 32 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.10 2.26 6.44 -2.39 -0.02 2.24 16 34 H 0.02 1.00 8.07 -2.38 -0.02 0.98 16 35 H -0.01 -0.32 7.42 -2.38 -0.02 -0.34 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.08 1.83 7.38 -2.39 -0.02 1.81 16 38 H 0.11 2.65 5.72 -2.39 -0.01 2.64 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 1.78 5.83 -2.39 -0.01 1.76 16 41 H 0.09 1.76 7.21 -2.39 -0.02 1.74 16 42 H 0.11 0.62 8.09 -2.38 -0.02 0.60 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 0.64 7.27 -2.39 -0.02 0.62 16 45 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.19 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.08 1.50 7.68 -2.39 -0.02 1.49 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -84.39 394.45 2.86 -81.53 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.97 Total: 7.46 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 6.86 Total: 26.12 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -8.37 Total: -112.60 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.09 Total: -45.00 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.48 Total: -4.34 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -84.39 2.86 -81.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188520730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.899 kcal (2) G-P(sol) polarization free energy of solvation -84.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds