Wall clock time and date at job start Wed Apr 1 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99793 * 2 1 4 4 C 1.50695 * 109.47087 * 66.05170 * 3 2 1 5 5 O 1.21295 * 120.00163 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00284 * 180.02562 * 4 3 2 7 7 C 1.37089 * 120.00646 * 179.97438 * 6 4 3 8 8 H 1.08008 * 119.99574 * 359.97438 * 7 6 4 9 9 C 1.38943 * 120.00558 * 179.97438 * 7 6 4 10 10 N 1.31420 * 119.99727 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47199 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47073 * 120.00435 * 11 9 7 14 14 H 1.48500 * 109.47081 * 239.99971 * 11 9 7 15 15 C 1.46896 * 110.99949 * 236.04643 * 2 1 3 16 16 H 1.08996 * 110.88378 * 64.44126 * 15 2 1 17 17 C 1.55156 * 111.03586 * 300.53560 * 15 2 1 18 18 C 1.54327 * 102.94193 * 206.40889 * 17 15 2 19 19 N 1.47023 * 107.27049 * 22.19255 * 18 17 15 20 20 C 1.34781 * 125.64977 * 181.09016 * 19 18 17 21 21 O 1.21278 * 120.00057 * 179.97438 * 20 19 18 22 22 C 1.50698 * 119.99571 * 359.96629 * 20 19 18 23 23 C 1.50708 * 109.46676 * 179.97438 * 22 20 19 24 24 C 1.38596 * 120.79795 * 269.71515 * 23 22 20 25 25 N 1.32335 * 119.10154 * 179.71968 * 24 23 22 26 26 C 1.31794 * 120.81938 * 0.56739 * 25 24 23 27 27 N 1.31795 * 121.75355 * 359.71419 * 26 25 24 28 28 C 1.32337 * 120.81631 * 359.97438 * 27 26 25 29 29 C 1.47421 * 108.70365 * 1.06108 * 19 18 17 30 30 H 1.09002 * 109.47464 * 189.74059 * 1 2 3 31 31 H 1.09007 * 109.47036 * 309.73749 * 1 2 3 32 32 H 1.09001 * 109.47571 * 69.73634 * 1 2 3 33 33 H 1.09001 * 109.46608 * 186.04318 * 3 2 1 34 34 H 1.08994 * 109.47592 * 306.04419 * 3 2 1 35 35 H 0.97002 * 119.99268 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99532 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.72341 * 324.77246 * 17 15 2 38 38 H 1.09002 * 110.71693 * 88.05106 * 17 15 2 39 39 H 1.08998 * 109.88404 * 141.61175 * 18 17 15 40 40 H 1.09000 * 109.88483 * 262.77817 * 18 17 15 41 41 H 1.09001 * 109.47487 * 299.99312 * 22 20 19 42 42 H 1.08996 * 109.47767 * 59.99724 * 22 20 19 43 43 H 1.07998 * 120.45054 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.12023 * 179.67746 * 26 25 24 45 45 H 1.08001 * 120.44387 * 180.02562 * 28 27 26 46 46 H 1.09002 * 110.36974 * 217.02823 * 29 19 18 47 47 H 1.09002 * 110.37257 * 94.70596 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3202 1.5234 7 6 1.6915 3.9351 2.7044 8 1 1.1285 3.3993 3.4545 9 6 2.0848 5.2473 2.9365 10 7 2.7702 5.8990 2.0240 11 14 1.6393 6.0853 4.5454 12 1 0.8714 5.1429 5.3983 13 1 2.8805 6.4925 5.2517 14 1 0.8124 7.2866 4.2655 15 6 1.9954 -0.7660 -1.1376 16 1 1.7244 -0.2944 -2.0822 17 6 1.5080 -2.2383 -1.0909 18 6 2.6173 -2.9938 -1.8527 19 7 3.8276 -2.1607 -1.8009 20 6 5.0126 -2.4604 -2.3689 21 8 5.9472 -1.6951 -2.2618 22 6 5.1760 -3.7467 -3.1369 23 6 6.5837 -3.8399 -3.6668 24 6 6.9061 -3.3361 -4.9171 25 7 8.1541 -3.4309 -5.3469 26 6 9.0813 -4.0052 -4.6071 27 7 8.8102 -4.5003 -3.4161 28 6 7.5858 -4.4364 -2.9180 29 6 3.5303 -0.9427 -1.0253 30 1 -0.3634 -1.0128 0.1739 31 1 -0.3633 0.6570 0.7903 32 1 -0.3634 0.3559 -0.9640 33 1 3.0796 1.3444 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5232 3.8014 0.8495 36 1 3.0444 6.8152 2.1859 37 1 1.4394 -2.5894 -0.0613 38 1 0.5501 -2.3437 -1.6002 39 1 2.8077 -3.9543 -1.3738 40 1 2.3170 -3.1471 -2.8892 41 1 4.9792 -4.5915 -2.4768 42 1 4.4728 -3.7647 -3.9695 43 1 6.1502 -2.8680 -5.5301 44 1 10.0900 -4.0723 -4.9871 45 1 7.3705 -4.8438 -1.9412 46 1 4.0437 -0.0834 -1.4568 47 1 3.8216 -1.0758 0.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189874247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:45 Heat of formation + Delta-G solvation = -2.380196 kcal Electronic energy + Delta-G solvation = -29582.943822 eV Core-core repulsion = 25380.453486 eV Total energy + Delta-G solvation = -4202.490336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.45065 -40.31519 -38.82061 -37.74864 -35.55000 -34.15457 -34.02109 -33.84361 -31.34515 -31.13464 -29.64312 -28.18859 -27.88986 -25.02255 -24.95634 -24.43772 -23.23356 -22.83710 -20.36605 -19.62288 -19.09368 -18.00045 -17.98368 -17.86182 -17.55570 -16.88688 -16.06467 -15.75028 -15.31759 -15.02865 -14.70030 -14.57085 -14.49012 -14.38226 -13.99612 -13.95010 -13.88709 -13.72410 -13.42726 -13.22210 -12.95107 -12.83411 -12.40755 -12.16572 -11.91891 -11.56013 -11.43027 -11.35762 -11.27457 -11.14275 -11.13578 -11.02246 -10.83159 -10.35100 -10.32997 -10.23510 -9.73083 -9.56870 -9.49991 -8.92618 -8.50639 -8.02470 -7.93737 -6.42754 -3.83716 0.49601 0.75105 2.30825 2.60515 3.15539 3.26353 3.33152 3.44251 3.79712 3.85481 3.87558 3.89722 4.07385 4.14159 4.21044 4.23070 4.30936 4.39387 4.55362 4.74708 4.87738 4.99851 5.03951 5.05788 5.11220 5.13714 5.24122 5.25269 5.46501 5.52164 5.58404 5.63333 5.71438 5.80581 5.83310 5.88297 5.98415 6.00300 6.03194 6.25394 6.45495 6.58890 7.12343 7.20186 7.28989 7.54403 7.72482 7.84450 8.04912 8.59914 9.16791 9.52867 10.04055 10.74953 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.001952 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.354218 B =14342.561122 C =15697.946829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.123 4.123 18 C 0.101 3.899 19 N -0.617 5.617 20 C 0.528 3.472 21 O -0.532 6.532 22 C -0.088 4.088 23 C -0.172 4.172 24 C 0.163 3.837 25 N -0.519 5.519 26 C 0.291 3.709 27 N -0.519 5.519 28 C 0.163 3.837 29 C 0.112 3.888 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.165 0.835 44 H 0.196 0.804 45 H 0.166 0.834 46 H 0.079 0.921 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -21.772 -15.557 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.229 3.771 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.757 3.243 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.208 1.208 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.161 4.161 18 C -0.023 4.023 19 N -0.352 5.352 20 C 0.316 3.684 21 O -0.408 6.408 22 C -0.129 4.129 23 C -0.176 4.176 24 C -0.003 4.003 25 N -0.232 5.232 26 C 0.003 3.997 27 N -0.232 5.232 28 C -0.003 4.003 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.033 0.967 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.183 0.817 44 H 0.213 0.787 45 H 0.183 0.817 46 H 0.097 0.903 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.545 -21.871 -14.878 26.689 hybrid contribution -1.024 1.358 -0.078 1.703 sum 2.521 -20.513 -14.957 25.512 Atomic orbital electron populations 1.22514 0.86125 1.02902 1.00760 1.61596 1.08928 1.12914 1.39678 1.21920 1.00810 0.88786 0.97417 1.19664 0.85588 0.82958 0.88870 1.90491 1.43991 1.64651 1.47072 1.41879 1.49289 1.10738 1.18074 1.19740 1.32891 0.95425 0.94746 0.87816 1.25277 0.96799 0.96696 0.99244 1.69626 1.37950 1.12220 1.34398 0.85799 0.78223 0.79002 0.81309 1.19210 1.20734 1.20788 1.22787 0.93872 0.94365 0.93062 0.92700 1.22704 0.97341 0.93951 1.02150 1.22115 0.84685 0.94713 1.00746 1.48424 1.10833 1.22485 1.53428 1.20066 0.81233 0.87804 0.79301 1.90781 1.38751 1.50995 1.60238 1.20487 0.93969 0.97152 1.01306 1.21078 0.97234 1.01982 0.97332 1.23085 0.93522 0.91135 0.92608 1.68438 1.01824 1.16011 1.36938 1.25000 0.99337 0.88914 0.86424 1.68445 1.21493 1.18980 1.14256 1.23099 0.87356 0.91311 0.98515 1.22290 0.94683 0.87090 0.96945 0.91851 0.88522 0.96701 0.89350 0.93310 0.77486 0.91895 0.88935 0.89937 0.90886 0.91194 0.87203 0.87274 0.81736 0.78724 0.81683 0.90308 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.90 60.06 0.53 0.89 16 2 N -0.51 -7.67 4.40 -233.75 -1.03 -8.70 16 3 C 0.04 0.72 5.34 -4.98 -0.03 0.70 16 4 C 0.44 10.20 7.42 -10.99 -0.08 10.12 16 5 O -0.58 -15.05 13.96 5.54 0.08 -14.97 16 6 N -0.56 -14.13 5.29 -10.97 -0.06 -14.18 16 7 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 11 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.07 0.78 2.70 -65.57 -0.18 0.60 16 16 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -0.99 5.33 -24.90 -0.13 -1.12 16 18 C 0.10 0.63 6.49 -3.06 -0.02 0.61 16 19 N -0.62 -5.95 3.33 -170.52 -0.57 -6.51 16 20 C 0.53 5.48 7.84 -10.98 -0.09 5.40 16 21 O -0.53 -8.11 16.29 5.56 0.09 -8.02 16 22 C -0.09 -0.52 5.07 -29.03 -0.15 -0.66 16 23 C -0.17 -1.41 4.41 -104.36 -0.46 -1.87 16 24 C 0.16 1.43 11.01 -17.20 -0.19 1.24 16 25 N -0.52 -5.31 10.44 -14.58 -0.15 -5.47 16 26 C 0.29 2.75 12.29 -92.15 -1.13 1.62 16 27 N -0.52 -5.35 10.44 -14.58 -0.15 -5.51 16 28 C 0.16 1.46 11.01 -17.20 -0.19 1.27 16 29 C 0.11 1.36 5.46 -2.53 -0.01 1.35 16 30 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 31 H 0.10 1.78 5.79 -51.93 -0.30 1.48 16 32 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 33 H 0.09 1.43 6.79 -51.93 -0.35 1.08 16 34 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.38 8.10 -51.93 -0.42 -0.04 16 42 H 0.11 0.36 8.10 -51.93 -0.42 -0.06 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 47 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -35.82 392.97 -9.29 -45.10 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.76 Total: 7.95 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -2.36 Total: 12.22 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -1.23 Total: -64.19 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.82 -9.29 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189874247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.722 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds