Wall clock time and date at job start Wed Apr 1 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99793 * 2 1 4 4 C 1.50695 * 109.47087 * 66.05170 * 3 2 1 5 5 O 1.21295 * 120.00163 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00284 * 180.02562 * 4 3 2 7 7 C 1.37089 * 120.00646 * 179.97438 * 6 4 3 8 8 H 1.08008 * 119.99574 * 359.97438 * 7 6 4 9 9 C 1.38943 * 120.00558 * 179.97438 * 7 6 4 10 10 N 1.31420 * 119.99727 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47199 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47073 * 120.00435 * 11 9 7 14 14 H 1.48500 * 109.47081 * 239.99971 * 11 9 7 15 15 C 1.46896 * 110.99949 * 236.04643 * 2 1 3 16 16 H 1.08996 * 110.88378 * 64.44126 * 15 2 1 17 17 C 1.55156 * 111.03586 * 300.53560 * 15 2 1 18 18 C 1.54327 * 102.94193 * 206.40889 * 17 15 2 19 19 N 1.47023 * 107.27049 * 22.19255 * 18 17 15 20 20 C 1.34781 * 125.64977 * 181.09016 * 19 18 17 21 21 O 1.21278 * 120.00057 * 179.97438 * 20 19 18 22 22 C 1.50698 * 119.99571 * 359.96629 * 20 19 18 23 23 C 1.50708 * 109.46676 * 179.97438 * 22 20 19 24 24 C 1.38596 * 120.79795 * 269.71515 * 23 22 20 25 25 N 1.32335 * 119.10154 * 179.71968 * 24 23 22 26 26 C 1.31794 * 120.81938 * 0.56739 * 25 24 23 27 27 N 1.31795 * 121.75355 * 359.71419 * 26 25 24 28 28 C 1.32337 * 120.81631 * 359.97438 * 27 26 25 29 29 C 1.47421 * 108.70365 * 1.06108 * 19 18 17 30 30 H 1.09002 * 109.47464 * 189.74059 * 1 2 3 31 31 H 1.09007 * 109.47036 * 309.73749 * 1 2 3 32 32 H 1.09001 * 109.47571 * 69.73634 * 1 2 3 33 33 H 1.09001 * 109.46608 * 186.04318 * 3 2 1 34 34 H 1.08994 * 109.47592 * 306.04419 * 3 2 1 35 35 H 0.97002 * 119.99268 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99532 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.72341 * 324.77246 * 17 15 2 38 38 H 1.09002 * 110.71693 * 88.05106 * 17 15 2 39 39 H 1.08998 * 109.88404 * 141.61175 * 18 17 15 40 40 H 1.09000 * 109.88483 * 262.77817 * 18 17 15 41 41 H 1.09001 * 109.47487 * 299.99312 * 22 20 19 42 42 H 1.08996 * 109.47767 * 59.99724 * 22 20 19 43 43 H 1.07998 * 120.45054 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.12023 * 179.67746 * 26 25 24 45 45 H 1.08001 * 120.44387 * 180.02562 * 28 27 26 46 46 H 1.09002 * 110.36974 * 217.02823 * 29 19 18 47 47 H 1.09002 * 110.37257 * 94.70596 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1409 6 7 2.0180 3.3202 1.5234 7 6 1.6915 3.9351 2.7044 8 1 1.1285 3.3993 3.4545 9 6 2.0848 5.2473 2.9365 10 7 2.7702 5.8990 2.0240 11 14 1.6393 6.0853 4.5454 12 1 0.8714 5.1429 5.3983 13 1 2.8805 6.4925 5.2517 14 1 0.8124 7.2866 4.2655 15 6 1.9954 -0.7660 -1.1376 16 1 1.7244 -0.2944 -2.0822 17 6 1.5080 -2.2383 -1.0909 18 6 2.6173 -2.9938 -1.8527 19 7 3.8276 -2.1607 -1.8009 20 6 5.0126 -2.4604 -2.3689 21 8 5.9472 -1.6951 -2.2618 22 6 5.1760 -3.7467 -3.1369 23 6 6.5837 -3.8399 -3.6668 24 6 6.9061 -3.3361 -4.9171 25 7 8.1541 -3.4309 -5.3469 26 6 9.0813 -4.0052 -4.6071 27 7 8.8102 -4.5003 -3.4161 28 6 7.5858 -4.4364 -2.9180 29 6 3.5303 -0.9427 -1.0253 30 1 -0.3634 -1.0128 0.1739 31 1 -0.3633 0.6570 0.7903 32 1 -0.3634 0.3559 -0.9640 33 1 3.0796 1.3444 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5232 3.8014 0.8495 36 1 3.0444 6.8152 2.1859 37 1 1.4394 -2.5894 -0.0613 38 1 0.5501 -2.3437 -1.6002 39 1 2.8077 -3.9543 -1.3738 40 1 2.3170 -3.1471 -2.8892 41 1 4.9792 -4.5915 -2.4768 42 1 4.4728 -3.7647 -3.9695 43 1 6.1502 -2.8680 -5.5301 44 1 10.0900 -4.0723 -4.9871 45 1 7.3705 -4.8438 -1.9412 46 1 4.0437 -0.0834 -1.4568 47 1 3.8216 -1.0758 0.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189874247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:44 Heat of formation + Delta-G solvation = -29.302734 kcal Electronic energy + Delta-G solvation = -29584.111271 eV Core-core repulsion = 25380.453486 eV Total energy + Delta-G solvation = -4203.657785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.09381 -41.15029 -40.30253 -38.96496 -36.74110 -35.78528 -34.77286 -34.68257 -33.29357 -32.06340 -30.41947 -29.30040 -28.86852 -26.74141 -25.59253 -25.45501 -24.26038 -23.52838 -21.40435 -20.92104 -20.23635 -19.84009 -18.63915 -18.59011 -18.35596 -17.82264 -17.54992 -16.62759 -16.55123 -16.34901 -16.04443 -15.77375 -15.54185 -15.35672 -15.14917 -14.98406 -14.60861 -14.56666 -14.50663 -14.26012 -13.93492 -13.69055 -13.61400 -13.41896 -13.09933 -13.00280 -12.80769 -12.57870 -12.42609 -12.33479 -12.12334 -11.93374 -11.85018 -11.84033 -11.80418 -11.46725 -11.15795 -10.37532 -10.28756 -10.23520 -10.00960 -9.69104 -9.25390 -8.47462 -5.96180 -0.13443 0.10894 1.35547 1.40646 1.55003 1.57845 1.86848 2.04110 2.27636 2.73510 2.83690 3.19234 3.23459 3.28636 3.31740 3.44689 3.59325 3.66044 3.70869 3.84515 3.90163 4.07783 4.18902 4.29319 4.36390 4.40260 4.44743 4.48596 4.56290 4.58643 4.61365 4.69528 4.76454 4.85495 4.88138 4.93990 5.04884 5.19039 5.20337 5.31686 5.40659 5.41935 5.84874 5.95318 6.04012 6.20943 6.50550 6.59122 7.07427 7.10256 7.12069 7.55413 8.10589 8.70278 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.001952 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.354218 B =14342.561122 C =15697.946829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.525 5.525 3 C 0.056 3.944 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.577 5.577 7 C -0.329 4.329 8 H 0.081 0.919 9 C -0.017 4.017 10 N -0.923 5.923 11 Si 0.994 3.006 12 H -0.271 1.271 13 H -0.273 1.273 14 H -0.270 1.270 15 C 0.072 3.928 16 H 0.068 0.932 17 C -0.118 4.118 18 C 0.100 3.900 19 N -0.614 5.614 20 C 0.524 3.476 21 O -0.592 6.592 22 C -0.075 4.075 23 C -0.172 4.172 24 C 0.150 3.850 25 N -0.542 5.542 26 C 0.278 3.722 27 N -0.542 5.542 28 C 0.148 3.852 29 C 0.113 3.887 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.187 0.813 44 H 0.216 0.784 45 H 0.184 0.816 46 H 0.057 0.943 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -23.717 -16.996 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.250 5.250 3 C -0.076 4.076 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.198 1.198 14 H -0.196 1.196 15 C -0.037 4.037 16 H 0.086 0.914 17 C -0.155 4.155 18 C -0.022 4.022 19 N -0.348 5.348 20 C 0.314 3.686 21 O -0.473 6.473 22 C -0.115 4.115 23 C -0.176 4.176 24 C -0.016 4.016 25 N -0.255 5.255 26 C -0.009 4.009 27 N -0.256 5.256 28 C -0.017 4.017 29 C -0.011 4.011 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.204 0.796 44 H 0.232 0.768 45 H 0.201 0.799 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.172 -23.854 -16.343 28.997 hybrid contribution -0.627 1.907 0.367 2.041 sum 1.545 -21.947 -15.977 27.191 Atomic orbital electron populations 1.22400 0.85718 1.03425 1.00161 1.61536 1.09437 1.11590 1.42417 1.21727 1.01474 0.90135 0.94233 1.20687 0.83739 0.82167 0.90357 1.90465 1.45002 1.65250 1.48879 1.41972 1.50079 1.11674 1.17681 1.19702 1.34204 0.96333 0.95659 0.90083 1.26075 0.96329 0.96744 1.02446 1.69693 1.38255 1.12652 1.35799 0.84854 0.78194 0.77917 0.77276 1.19574 1.19848 1.19565 1.22834 0.93005 0.96045 0.91861 0.91447 1.22740 0.99306 0.91170 1.02328 1.22414 0.82243 0.94572 1.02948 1.48511 1.11956 1.21902 1.52429 1.20889 0.80359 0.88578 0.78763 1.90763 1.40755 1.53216 1.62525 1.20575 0.93189 0.95292 1.02435 1.21301 0.98355 1.01092 0.96891 1.23579 0.93606 0.90950 0.93430 1.68465 1.02700 1.16736 1.37619 1.25447 1.00272 0.88778 0.86405 1.68464 1.22504 1.19873 1.14760 1.23557 0.87322 0.91481 0.99378 1.22061 0.95353 0.87938 0.95772 0.89387 0.92931 0.94675 0.88559 0.91478 0.77237 0.91385 0.90150 0.87338 0.88266 0.87603 0.83876 0.83555 0.79568 0.76774 0.79861 0.92448 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 8.90 127.69 1.14 1.98 16 2 N -0.52 -15.45 4.40 -893.45 -3.93 -19.38 16 3 C 0.06 1.92 5.34 85.55 0.46 2.38 16 4 C 0.44 21.03 7.42 87.65 0.65 21.68 16 5 O -0.61 -32.99 13.96 -3.08 -0.04 -33.03 16 6 N -0.58 -29.96 5.29 -306.98 -1.62 -31.58 16 7 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 10 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 11 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C 0.07 1.45 2.70 46.31 0.12 1.58 16 16 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 17 C -0.12 -1.43 5.33 31.78 0.17 -1.26 16 18 C 0.10 0.75 6.49 86.73 0.56 1.31 16 19 N -0.61 -10.23 3.33 -811.78 -2.70 -12.93 16 20 C 0.52 9.74 7.84 87.66 0.69 10.43 16 21 O -0.59 -18.05 16.29 -3.02 -0.05 -18.10 16 22 C -0.07 -0.58 5.07 29.10 0.15 -0.43 16 23 C -0.17 -2.46 4.41 -19.69 -0.09 -2.55 16 24 C 0.15 2.41 11.01 84.70 0.93 3.35 16 25 N -0.54 -10.82 10.44 -200.05 -2.09 -12.90 16 26 C 0.28 5.24 12.29 180.88 2.22 7.46 16 27 N -0.54 -11.04 10.44 -200.05 -2.09 -13.13 16 28 C 0.15 2.47 11.01 84.70 0.93 3.41 16 29 C 0.11 2.66 5.46 86.86 0.47 3.13 16 30 H 0.09 1.97 7.37 -2.39 -0.02 1.95 16 31 H 0.05 1.95 5.79 -2.38 -0.01 1.94 16 32 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.10 3.18 6.79 -2.39 -0.02 3.16 16 34 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.39 19.71 7.90 -92.71 -0.73 18.98 16 36 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.14 0.22 8.10 -2.39 -0.02 0.20 16 42 H 0.15 0.10 8.10 -2.39 -0.02 0.08 16 43 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.22 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.06 1.57 7.68 -2.39 -0.02 1.56 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -83.32 392.97 -0.25 -83.57 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.27 Total: 28.47 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 9.69 Total: 34.02 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -12.15 Total: -140.37 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -83.32 -0.25 -83.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189874247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.268 kcal (2) G-P(sol) polarization free energy of solvation -83.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds