Wall clock time and date at job start Wed Apr 1 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00297 * 2 1 4 4 C 1.50694 * 109.46921 * 66.04504 * 3 2 1 5 5 O 1.21291 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99866 * 179.97438 * 4 3 2 7 7 C 1.37095 * 120.00156 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00002 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99803 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99879 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.47549 * 89.99623 * 11 9 7 13 13 H 1.48504 * 109.46988 * 209.99946 * 11 9 7 14 14 H 1.48508 * 109.46780 * 329.99552 * 11 9 7 15 15 C 1.46896 * 110.99824 * 236.03999 * 2 1 3 16 16 H 1.09001 * 110.88385 * 67.84094 * 15 2 1 17 17 C 1.55155 * 111.03853 * 191.73907 * 15 2 1 18 18 C 1.54330 * 102.94292 * 153.59283 * 17 15 2 19 19 N 1.47026 * 107.26840 * 337.81024 * 18 17 15 20 20 C 1.34775 * 125.64519 * 178.90227 * 19 18 17 21 21 O 1.21275 * 119.99840 * 180.02562 * 20 19 18 22 22 C 1.50702 * 120.00105 * 0.02606 * 20 19 18 23 23 C 1.50701 * 109.47019 * 180.02562 * 22 20 19 24 24 C 1.38603 * 120.79944 * 269.71895 * 23 22 20 25 25 N 1.32334 * 119.10517 * 179.71960 * 24 23 22 26 26 C 1.31797 * 120.81446 * 0.56722 * 25 24 23 27 27 N 1.31791 * 121.75449 * 359.70877 * 26 25 24 28 28 C 1.32338 * 120.82010 * 359.97438 * 27 26 25 29 29 C 1.47420 * 108.70428 * 358.94103 * 19 18 17 30 30 H 1.09000 * 109.47323 * 183.95786 * 1 2 3 31 31 H 1.09001 * 109.47115 * 303.95720 * 1 2 3 32 32 H 1.09003 * 109.46793 * 63.95029 * 1 2 3 33 33 H 1.08994 * 109.46711 * 186.04600 * 3 2 1 34 34 H 1.08999 * 109.46961 * 306.04574 * 3 2 1 35 35 H 0.97002 * 119.99690 * 0.02562 * 6 4 3 36 36 H 0.97003 * 120.00465 * 180.02562 * 10 9 7 37 37 H 1.08998 * 110.71769 * 35.23404 * 17 15 2 38 38 H 1.08991 * 110.72382 * 271.95801 * 17 15 2 39 39 H 1.08998 * 109.88224 * 218.39343 * 18 17 15 40 40 H 1.08998 * 109.88221 * 97.22736 * 18 17 15 41 41 H 1.09003 * 109.47130 * 299.99857 * 22 20 19 42 42 H 1.09005 * 109.46867 * 59.99839 * 22 20 19 43 43 H 1.08002 * 120.44589 * 0.02562 * 24 23 22 44 44 H 1.07995 * 119.11631 * 179.68257 * 26 25 24 45 45 H 1.07996 * 120.44340 * 179.97438 * 28 27 26 46 46 H 1.08997 * 110.36858 * 142.96748 * 29 19 18 47 47 H 1.08997 * 110.36396 * 265.17736 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0191 3.3198 1.5237 7 6 1.6925 3.9348 2.7047 8 1 1.1294 3.3992 3.4547 9 6 2.0868 5.2467 2.9371 10 7 1.7742 5.8360 4.0693 11 14 3.0613 6.1728 1.6401 12 1 2.1258 6.8778 0.7276 13 1 3.9486 7.1633 2.3012 14 1 3.8844 5.2135 0.8607 15 6 1.9954 -0.7661 -1.1375 16 1 1.7760 -0.2633 -2.0794 17 6 3.5187 -1.0171 -0.9828 18 6 3.7395 -2.3124 -1.7923 19 7 2.4434 -3.0016 -1.8751 20 6 2.2108 -4.1623 -2.5194 21 8 1.0967 -4.6414 -2.5224 22 6 3.3351 -4.8648 -3.2360 23 6 2.8145 -6.1292 -3.8695 24 6 2.8310 -7.3293 -3.1762 25 7 2.3604 -8.4181 -3.7629 26 6 1.8909 -8.3726 -4.9936 27 7 1.8647 -7.2509 -5.6849 28 6 2.3128 -6.1211 -5.1614 29 6 1.4402 -2.2123 -1.1376 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5245 3.8010 0.8499 36 1 2.0492 6.7520 4.2315 37 1 3.7803 -1.1676 0.0646 38 1 4.0906 -0.1934 -1.4097 39 1 4.4653 -2.9476 -1.2846 40 1 4.0940 -2.0679 -2.7935 41 1 3.7381 -4.2107 -4.0092 42 1 4.1218 -5.1123 -2.5231 43 1 3.2182 -7.3741 -2.1690 44 1 1.5182 -9.2788 -5.4477 45 1 2.2888 -5.2055 -5.7335 46 1 0.4781 -2.2492 -1.6484 47 1 1.3416 -2.5826 -0.1172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189874253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:51 Heat of formation + Delta-G solvation = 4.500190 kcal Electronic energy + Delta-G solvation = -29464.583608 eV Core-core repulsion = 25262.391627 eV Total energy + Delta-G solvation = -4202.191981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.51511 -40.39596 -38.97213 -37.89084 -35.65807 -34.22008 -34.08348 -33.92785 -31.72553 -31.28981 -29.79927 -28.51455 -27.58652 -25.50285 -25.01791 -24.21690 -23.23178 -22.80229 -20.41430 -19.67835 -19.35512 -18.31133 -18.05757 -18.04527 -17.63429 -16.96715 -16.14256 -15.79602 -15.39987 -15.10808 -15.00299 -14.71795 -14.56132 -14.23586 -14.07114 -14.03137 -13.98060 -13.78170 -13.28402 -13.18011 -13.01963 -12.97157 -12.51071 -12.45244 -12.22222 -11.94520 -11.62918 -11.38164 -11.31156 -11.20522 -11.17335 -11.08510 -10.94897 -10.63975 -10.41379 -10.01652 -9.79872 -9.63037 -9.58241 -9.01342 -8.65251 -8.23236 -8.08206 -6.34895 -3.86545 0.43385 0.68848 2.22568 2.52613 2.97781 3.02527 3.11376 3.38028 3.68255 3.73535 3.78455 3.81386 4.00400 4.06127 4.08346 4.16897 4.25274 4.34234 4.46411 4.68062 4.76144 4.82771 4.95197 4.98738 5.03120 5.06345 5.17797 5.21098 5.40437 5.40808 5.49774 5.54977 5.62368 5.69866 5.73299 5.76784 5.85186 5.90776 5.95601 5.97875 6.43282 6.52679 7.00181 7.13182 7.17810 7.53964 7.66285 7.75804 8.10425 8.55776 8.91288 9.38114 9.78607 10.78148 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.001687 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.434015 B =16591.316492 C =16908.765117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.507 5.507 3 C 0.043 3.957 4 C 0.452 3.548 5 O -0.558 6.558 6 N -0.590 5.590 7 C -0.305 4.305 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.056 0.944 17 C -0.127 4.127 18 C 0.100 3.900 19 N -0.617 5.617 20 C 0.529 3.471 21 O -0.534 6.534 22 C -0.089 4.089 23 C -0.172 4.172 24 C 0.163 3.837 25 N -0.519 5.519 26 C 0.291 3.709 27 N -0.519 5.519 28 C 0.162 3.838 29 C 0.116 3.884 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.017 0.983 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.196 0.804 45 H 0.165 0.835 46 H 0.077 0.923 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.354 -19.605 -20.184 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.231 5.231 3 C -0.088 4.088 4 C 0.238 3.762 5 O -0.440 6.440 6 N -0.230 5.230 7 C -0.434 4.434 8 H 0.138 0.862 9 C -0.161 4.161 10 N -0.520 5.520 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.041 4.041 16 H 0.074 0.926 17 C -0.165 4.165 18 C -0.023 4.023 19 N -0.352 5.352 20 C 0.317 3.683 21 O -0.411 6.411 22 C -0.130 4.130 23 C -0.176 4.176 24 C -0.003 4.003 25 N -0.232 5.232 26 C 0.003 3.997 27 N -0.232 5.232 28 C -0.004 4.004 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.035 0.965 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.183 0.817 44 H 0.213 0.787 45 H 0.183 0.817 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.110 -21.238 -19.495 29.692 hybrid contribution 0.918 2.262 -1.242 2.739 sum 8.027 -18.976 -20.737 29.233 Atomic orbital electron populations 1.22611 0.86126 1.02487 1.01782 1.61617 1.09013 1.12711 1.39741 1.21902 1.00880 0.88915 0.97118 1.19588 0.85254 0.82452 0.88933 1.90538 1.42633 1.64050 1.46749 1.42208 1.50856 1.11974 1.17944 1.19425 1.33728 0.96252 0.93984 0.86247 1.25037 0.97859 0.96508 0.96711 1.69617 1.45676 1.13567 1.23168 0.86680 0.80488 0.80548 0.81695 1.19685 1.20161 1.19505 1.22786 0.94900 0.93429 0.93022 0.92637 1.22752 0.95605 0.96041 1.02144 1.22132 0.85447 0.94089 1.00616 1.48434 1.11592 1.22395 1.52743 1.20064 0.89769 0.79679 0.78747 1.90764 1.24488 1.64751 1.61063 1.20493 0.97445 0.93982 1.01054 1.21077 1.02861 0.96632 0.97038 1.23110 0.90800 0.87210 0.99168 1.68448 1.11235 1.31531 1.11960 1.25004 0.91477 0.96175 0.87018 1.68440 1.16490 0.99728 1.38583 1.23081 0.88809 0.96622 0.91840 1.22234 0.91786 0.89259 0.97372 0.91750 0.88196 0.96470 0.89157 0.93259 0.79761 0.91589 0.88724 0.89809 0.90772 0.91120 0.87225 0.87128 0.81659 0.78710 0.81747 0.90436 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.93 60.07 0.54 0.79 16 2 N -0.51 -7.24 4.40 -233.75 -1.03 -8.27 16 3 C 0.04 0.66 5.36 -4.98 -0.03 0.63 16 4 C 0.45 9.68 7.47 -10.98 -0.08 9.60 16 5 O -0.56 -14.20 13.91 5.55 0.08 -14.12 16 6 N -0.59 -13.42 5.09 -10.96 -0.06 -13.48 16 7 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 9 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.21 13.96 55.50 0.77 -24.43 16 11 Si 0.88 18.72 27.74 -169.99 -4.71 14.00 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 15 C 0.07 0.71 2.71 -65.57 -0.18 0.54 16 16 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 17 C -0.13 -1.01 5.62 -24.89 -0.14 -1.15 16 18 C 0.10 0.59 6.49 -3.06 -0.02 0.57 16 19 N -0.62 -5.42 3.33 -170.52 -0.57 -5.99 16 20 C 0.53 5.01 7.84 -10.99 -0.09 4.92 16 21 O -0.53 -7.50 16.29 5.56 0.09 -7.41 16 22 C -0.09 -0.46 5.07 -29.03 -0.15 -0.61 16 23 C -0.17 -1.29 4.41 -104.36 -0.46 -1.75 16 24 C 0.16 1.34 11.01 -17.20 -0.19 1.15 16 25 N -0.52 -5.00 10.44 -14.58 -0.15 -5.15 16 26 C 0.29 2.55 12.29 -92.15 -1.13 1.42 16 27 N -0.52 -4.96 10.44 -14.59 -0.15 -5.11 16 28 C 0.16 1.32 11.01 -17.20 -0.19 1.13 16 29 C 0.12 1.25 5.07 -2.53 -0.01 1.24 16 30 H 0.06 0.86 6.96 -51.93 -0.36 0.50 16 31 H 0.10 1.84 5.83 -51.93 -0.30 1.54 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16 34 H 0.05 0.67 8.12 -51.93 -0.42 0.24 16 35 H 0.37 7.33 5.76 -40.82 -0.24 7.09 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.55 7.91 -51.93 -0.41 0.13 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 0.30 8.10 -51.93 -0.42 -0.12 16 42 H 0.11 0.33 8.10 -51.93 -0.42 -0.10 16 43 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.20 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 47 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -36.46 389.66 -8.94 -45.40 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.71 Total: 7.71 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.37 Total: 10.98 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -1.18 Total: -62.44 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.71 Total: 14.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.46 -8.94 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189874253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.898 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds