Wall clock time and date at job start Wed Apr 1 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00297 * 2 1 4 4 C 1.50694 * 109.46921 * 66.04504 * 3 2 1 5 5 O 1.21291 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99866 * 179.97438 * 4 3 2 7 7 C 1.37095 * 120.00156 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00002 * 0.02562 * 7 6 4 9 9 C 1.38952 * 119.99803 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99879 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.47549 * 89.99623 * 11 9 7 13 13 H 1.48504 * 109.46988 * 209.99946 * 11 9 7 14 14 H 1.48508 * 109.46780 * 329.99552 * 11 9 7 15 15 C 1.46896 * 110.99824 * 236.03999 * 2 1 3 16 16 H 1.09001 * 110.88385 * 67.84094 * 15 2 1 17 17 C 1.55155 * 111.03853 * 191.73907 * 15 2 1 18 18 C 1.54330 * 102.94292 * 153.59283 * 17 15 2 19 19 N 1.47026 * 107.26840 * 337.81024 * 18 17 15 20 20 C 1.34775 * 125.64519 * 178.90227 * 19 18 17 21 21 O 1.21275 * 119.99840 * 180.02562 * 20 19 18 22 22 C 1.50702 * 120.00105 * 0.02606 * 20 19 18 23 23 C 1.50701 * 109.47019 * 180.02562 * 22 20 19 24 24 C 1.38603 * 120.79944 * 269.71895 * 23 22 20 25 25 N 1.32334 * 119.10517 * 179.71960 * 24 23 22 26 26 C 1.31797 * 120.81446 * 0.56722 * 25 24 23 27 27 N 1.31791 * 121.75449 * 359.70877 * 26 25 24 28 28 C 1.32338 * 120.82010 * 359.97438 * 27 26 25 29 29 C 1.47420 * 108.70428 * 358.94103 * 19 18 17 30 30 H 1.09000 * 109.47323 * 183.95786 * 1 2 3 31 31 H 1.09001 * 109.47115 * 303.95720 * 1 2 3 32 32 H 1.09003 * 109.46793 * 63.95029 * 1 2 3 33 33 H 1.08994 * 109.46711 * 186.04600 * 3 2 1 34 34 H 1.08999 * 109.46961 * 306.04574 * 3 2 1 35 35 H 0.97002 * 119.99690 * 0.02562 * 6 4 3 36 36 H 0.97003 * 120.00465 * 180.02562 * 10 9 7 37 37 H 1.08998 * 110.71769 * 35.23404 * 17 15 2 38 38 H 1.08991 * 110.72382 * 271.95801 * 17 15 2 39 39 H 1.08998 * 109.88224 * 218.39343 * 18 17 15 40 40 H 1.08998 * 109.88221 * 97.22736 * 18 17 15 41 41 H 1.09003 * 109.47130 * 299.99857 * 22 20 19 42 42 H 1.09005 * 109.46867 * 59.99839 * 22 20 19 43 43 H 1.08002 * 120.44589 * 0.02562 * 24 23 22 44 44 H 1.07995 * 119.11631 * 179.68257 * 26 25 24 45 45 H 1.07996 * 120.44340 * 179.97438 * 28 27 26 46 46 H 1.08997 * 110.36858 * 142.96748 * 29 19 18 47 47 H 1.08997 * 110.36396 * 265.17736 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0191 3.3198 1.5237 7 6 1.6925 3.9348 2.7047 8 1 1.1294 3.3992 3.4547 9 6 2.0868 5.2467 2.9371 10 7 1.7742 5.8360 4.0693 11 14 3.0613 6.1728 1.6401 12 1 2.1258 6.8778 0.7276 13 1 3.9486 7.1633 2.3012 14 1 3.8844 5.2135 0.8607 15 6 1.9954 -0.7661 -1.1375 16 1 1.7760 -0.2633 -2.0794 17 6 3.5187 -1.0171 -0.9828 18 6 3.7395 -2.3124 -1.7923 19 7 2.4434 -3.0016 -1.8751 20 6 2.2108 -4.1623 -2.5194 21 8 1.0967 -4.6414 -2.5224 22 6 3.3351 -4.8648 -3.2360 23 6 2.8145 -6.1292 -3.8695 24 6 2.8310 -7.3293 -3.1762 25 7 2.3604 -8.4181 -3.7629 26 6 1.8909 -8.3726 -4.9936 27 7 1.8647 -7.2509 -5.6849 28 6 2.3128 -6.1211 -5.1614 29 6 1.4402 -2.2123 -1.1376 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5245 3.8010 0.8499 36 1 2.0492 6.7520 4.2315 37 1 3.7803 -1.1676 0.0646 38 1 4.0906 -0.1934 -1.4097 39 1 4.4653 -2.9476 -1.2846 40 1 4.0940 -2.0679 -2.7935 41 1 3.7381 -4.2107 -4.0092 42 1 4.1218 -5.1123 -2.5231 43 1 3.2182 -7.3741 -2.1690 44 1 1.5182 -9.2788 -5.4477 45 1 2.2888 -5.2055 -5.7335 46 1 0.4781 -2.2492 -1.6484 47 1 1.3416 -2.5826 -0.1172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189874253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:50 Heat of formation + Delta-G solvation = -24.256312 kcal Electronic energy + Delta-G solvation = -29465.830583 eV Core-core repulsion = 25262.391627 eV Total energy + Delta-G solvation = -4203.438956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.09678 -41.15926 -40.38537 -38.98998 -36.75573 -35.80403 -34.77414 -34.68582 -33.72894 -32.04213 -30.63385 -29.41115 -28.50401 -26.95057 -25.59467 -25.42467 -24.16572 -23.42775 -21.41727 -21.12043 -20.34305 -20.03937 -18.64143 -18.59006 -18.33491 -17.83439 -17.55456 -16.80841 -16.53772 -16.36493 -15.90546 -15.72356 -15.48963 -15.30071 -15.05813 -14.87557 -14.72557 -14.58932 -14.52041 -14.33842 -14.14336 -13.84004 -13.69098 -13.61508 -13.13075 -13.00431 -12.93295 -12.62011 -12.39072 -12.22432 -11.95606 -11.92924 -11.89332 -11.84431 -11.74832 -11.43632 -11.16209 -10.38885 -10.33978 -10.23755 -10.20463 -9.68883 -9.25495 -8.38401 -5.99308 -0.13624 0.10595 1.32081 1.38292 1.47239 1.57456 1.86112 1.99878 2.25900 2.64954 2.80447 3.17964 3.22683 3.23349 3.28365 3.38799 3.59356 3.65677 3.71107 3.84283 3.89741 4.07755 4.12902 4.30543 4.36988 4.39466 4.44738 4.46056 4.56122 4.57017 4.59451 4.65355 4.73653 4.85243 4.88436 4.93535 5.06721 5.13564 5.22427 5.32122 5.41688 5.55749 5.87789 5.95080 5.99916 6.18033 6.49774 6.62982 6.92170 7.07199 7.09529 7.43574 8.01806 8.79316 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.001687 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.434015 B =16591.316492 C =16908.765117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.528 5.528 3 C 0.057 3.943 4 C 0.451 3.549 5 O -0.607 6.607 6 N -0.592 5.592 7 C -0.327 4.327 8 H 0.053 0.947 9 C -0.017 4.017 10 N -0.937 5.937 11 Si 0.965 3.035 12 H -0.260 1.260 13 H -0.277 1.277 14 H -0.225 1.225 15 C 0.072 3.928 16 H 0.073 0.927 17 C -0.125 4.125 18 C 0.100 3.900 19 N -0.615 5.615 20 C 0.526 3.474 21 O -0.591 6.591 22 C -0.076 4.076 23 C -0.172 4.172 24 C 0.148 3.852 25 N -0.543 5.543 26 C 0.278 3.722 27 N -0.542 5.542 28 C 0.150 3.850 29 C 0.117 3.883 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.184 0.816 44 H 0.216 0.784 45 H 0.188 0.812 46 H 0.060 0.940 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.066 -19.074 -24.212 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.074 4.074 4 C 0.239 3.761 5 O -0.491 6.491 6 N -0.234 5.234 7 C -0.456 4.456 8 H 0.071 0.929 9 C -0.215 4.215 10 N -0.578 5.578 11 Si 0.785 3.215 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.148 1.148 15 C -0.036 4.036 16 H 0.091 0.909 17 C -0.163 4.163 18 C -0.022 4.022 19 N -0.348 5.348 20 C 0.316 3.684 21 O -0.472 6.472 22 C -0.117 4.117 23 C -0.176 4.176 24 C -0.017 4.017 25 N -0.256 5.256 26 C -0.009 4.009 27 N -0.255 5.255 28 C -0.015 4.015 29 C -0.006 4.006 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.225 0.775 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.201 0.799 44 H 0.232 0.768 45 H 0.204 0.796 46 H 0.079 0.921 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.864 -20.720 -23.547 33.194 hybrid contribution -0.357 1.984 0.129 2.020 sum 10.507 -18.736 -23.418 31.778 Atomic orbital electron populations 1.22417 0.87191 1.02174 1.00589 1.61516 1.08411 1.12749 1.42611 1.21821 1.03191 0.88978 0.93379 1.20924 0.82907 0.81747 0.90560 1.90533 1.44189 1.65155 1.49209 1.42016 1.51792 1.12650 1.16917 1.18982 1.34621 0.96992 0.95007 0.92870 1.26132 0.98724 0.96996 0.99639 1.69812 1.47406 1.14302 1.26248 0.85365 0.78863 0.79090 0.78197 1.18418 1.20269 1.14816 1.22824 0.96662 0.92151 0.92012 0.90890 1.22804 0.93441 0.98197 1.01881 1.22394 0.84103 0.93070 1.02593 1.48516 1.12254 1.22199 1.51868 1.20821 0.90021 0.79370 0.78185 1.90750 1.27077 1.66164 1.63175 1.20578 0.96079 0.92868 1.02130 1.21294 1.02261 0.97300 0.96729 1.23559 0.90692 0.87459 1.00035 1.68466 1.12151 1.32549 1.12475 1.25446 0.91461 0.96928 0.87048 1.68468 1.17349 1.00441 1.39278 1.23574 0.88346 0.97006 0.92604 1.22015 0.92156 0.90259 0.96212 0.91254 0.92591 0.94724 0.85456 0.90291 0.77460 0.91252 0.90507 0.87129 0.88558 0.87529 0.83611 0.84039 0.79887 0.76774 0.79554 0.92112 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.93 127.69 1.14 1.86 16 2 N -0.53 -14.26 4.40 -893.46 -3.93 -18.19 16 3 C 0.06 1.55 5.36 85.55 0.46 2.01 16 4 C 0.45 19.25 7.47 87.65 0.66 19.90 16 5 O -0.61 -32.47 13.91 -3.06 -0.04 -32.51 16 6 N -0.59 -26.57 5.09 -306.98 -1.56 -28.13 16 7 C -0.33 -18.69 10.16 84.04 0.85 -17.83 16 8 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 9 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 10 N -0.94 -55.81 13.96 21.66 0.30 -55.51 16 11 Si 0.96 37.22 27.74 68.60 1.90 39.12 16 12 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 13 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.23 -7.02 6.52 99.48 0.65 -6.37 16 15 C 0.07 1.28 2.71 46.31 0.13 1.41 16 16 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 17 C -0.13 -1.40 5.62 31.78 0.18 -1.22 16 18 C 0.10 0.63 6.49 86.73 0.56 1.20 16 19 N -0.61 -8.90 3.33 -811.81 -2.70 -11.60 16 20 C 0.53 8.61 7.84 87.66 0.69 9.30 16 21 O -0.59 -16.31 16.29 -3.02 -0.05 -16.36 16 22 C -0.08 -0.48 5.07 29.10 0.15 -0.33 16 23 C -0.17 -2.18 4.41 -19.69 -0.09 -2.27 16 24 C 0.15 2.25 11.01 84.70 0.93 3.18 16 25 N -0.54 -10.25 10.44 -200.04 -2.09 -12.34 16 26 C 0.28 4.81 12.29 180.88 2.22 7.03 16 27 N -0.54 -9.96 10.44 -200.06 -2.09 -12.05 16 28 C 0.15 2.18 11.01 84.70 0.93 3.11 16 29 C 0.12 2.39 5.07 86.86 0.44 2.83 16 30 H 0.07 1.93 6.96 -2.39 -0.02 1.91 16 31 H 0.06 2.17 5.83 -2.39 -0.01 2.16 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.13 2.58 7.01 -2.39 -0.02 2.56 16 34 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 35 H 0.39 14.16 5.76 -92.71 -0.53 13.63 16 36 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 0.70 7.91 -2.39 -0.02 0.68 16 39 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.15 -0.08 8.10 -2.39 -0.02 -0.10 16 42 H 0.14 0.07 8.10 -2.38 -0.02 0.05 16 43 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 44 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 45 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.06 1.42 7.93 -2.39 -0.02 1.40 16 47 H 0.06 1.48 8.11 -2.39 -0.02 1.46 16 Total: -1.00 -90.30 389.66 -0.13 -90.43 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.41 Total: 27.39 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 9.72 Total: 29.74 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -12.07 Total: -137.81 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.09 Total: -48.87 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.90 Total: 39.12 kcal Total: -90.30 -0.13 -90.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189874253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.174 kcal (2) G-P(sol) polarization free energy of solvation -90.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds