Wall clock time and date at job start Wed Apr 1 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99768 * 2 1 4 4 H 1.08002 * 119.99578 * 203.29969 * 3 2 1 5 5 C 1.38816 * 120.00035 * 23.29626 * 3 2 1 6 6 N 1.31611 * 119.99855 * 13.98123 * 5 3 2 7 7 Si 1.86793 * 119.99852 * 193.97839 * 5 3 2 8 8 H 1.48503 * 109.46921 * 90.00011 * 7 5 3 9 9 H 1.48493 * 109.47328 * 210.00168 * 7 5 3 10 10 H 1.48498 * 109.47505 * 330.00381 * 7 5 3 11 11 C 1.46504 * 120.00111 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.88472 * 182.42854 * 11 2 1 13 13 C 1.55147 * 111.00616 * 58.54687 * 11 2 1 14 14 C 1.54319 * 102.94462 * 206.38793 * 13 11 2 15 15 N 1.47022 * 107.27143 * 22.19131 * 14 13 11 16 16 C 1.34773 * 125.64861 * 181.02962 * 15 14 13 17 17 O 1.21286 * 120.00036 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00399 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47626 * 180.02562 * 18 16 15 20 20 N 1.46497 * 109.47323 * 179.97438 * 19 18 16 21 21 C 1.34773 * 120.00097 * 179.97438 * 20 19 18 22 22 O 1.21520 * 120.00054 * 0.02562 * 21 20 19 23 23 C 1.48150 * 120.00403 * 180.02562 * 21 20 19 24 24 C 1.39436 * 120.09799 * 180.02562 * 23 21 20 25 25 N 1.32083 * 119.87157 * 180.02562 * 24 23 21 26 26 C 1.32143 * 120.07415 * 0.02562 * 25 24 23 27 27 C 1.38732 * 120.18930 * 359.97438 * 26 25 24 28 28 N 1.31800 * 120.12954 * 0.26364 * 27 26 25 29 29 C 1.47424 * 108.70128 * 1.28603 * 15 14 13 30 30 H 1.08996 * 109.46955 * 275.16526 * 1 2 3 31 31 H 1.09001 * 109.47196 * 35.17580 * 1 2 3 32 32 H 1.09007 * 109.46433 * 155.17128 * 1 2 3 33 33 H 0.97003 * 120.00174 * 179.97438 * 6 5 3 34 34 H 1.09004 * 110.72062 * 88.02201 * 13 11 2 35 35 H 1.09002 * 110.71862 * 324.75136 * 13 11 2 36 36 H 1.09002 * 109.88212 * 262.77685 * 14 13 11 37 37 H 1.08994 * 109.88662 * 141.61205 * 14 13 11 38 38 H 1.09003 * 109.47062 * 59.99991 * 18 16 15 39 39 H 1.09005 * 109.46846 * 300.00697 * 18 16 15 40 40 H 1.09003 * 109.47336 * 59.99634 * 19 18 16 41 41 H 1.09003 * 109.46658 * 300.00162 * 19 18 16 42 42 H 0.97000 * 120.00005 * 0.02562 * 20 19 18 43 43 H 1.07995 * 120.07025 * 0.02562 * 24 23 21 44 44 H 1.07991 * 119.90650 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.93397 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.36041 * 94.48382 * 29 15 14 47 47 H 1.08997 * 110.37054 * 216.80294 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1636 1.2241 -0.3700 5 6 1.5404 2.3391 0.4754 6 7 0.4271 2.2557 1.1725 7 14 2.3007 4.0091 0.1260 8 1 1.7559 4.5443 -1.1476 9 1 1.9760 4.9426 1.2343 10 1 3.7747 3.8682 0.0133 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.8211 -2.1288 -1.2346 14 6 2.0906 -3.5685 -0.7485 15 7 2.0434 -3.5490 0.7209 16 6 2.2487 -4.6091 1.5274 17 8 2.1844 -4.4766 2.7313 18 6 2.5580 -5.9591 0.9335 19 6 2.7448 -6.9802 2.0575 20 7 3.0449 -8.2927 1.4801 21 6 3.2501 -9.3528 2.2867 22 8 3.1856 -9.2200 3.4929 23 6 3.5541 -10.6800 1.7028 24 6 3.7662 -11.7782 2.5354 25 7 4.0375 -12.9593 2.0101 26 6 4.1084 -13.1001 0.6981 27 6 3.8979 -12.0093 -0.1329 28 7 3.6313 -10.8262 0.3831 29 6 1.7284 -2.1792 1.1656 30 1 -0.3633 0.0925 1.0235 31 1 -0.3634 0.8400 -0.5920 32 1 -0.3632 -0.9328 -0.4316 33 1 0.0016 3.0615 1.5050 34 1 2.4582 -1.8831 -2.0843 35 1 0.7694 -1.9983 -1.4893 36 1 3.0752 -3.8947 -1.0835 37 1 1.3240 -4.2399 -1.1351 38 1 3.4727 -5.8958 0.3440 39 1 1.7336 -6.2716 0.2925 40 1 1.8299 -7.0434 2.6467 41 1 3.5690 -6.6678 2.6988 42 1 3.0967 -8.3986 0.5173 43 1 3.7088 -11.6634 3.6077 44 1 4.3308 -14.0669 0.2716 45 1 3.9572 -12.1289 -1.2046 46 1 0.6559 -2.0702 1.3272 47 1 2.2763 -1.9408 2.0772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194097691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:12 Heat of formation + Delta-G solvation = 12.399260 kcal Electronic energy + Delta-G solvation = -29053.589851 eV Core-core repulsion = 24851.740400 eV Total energy + Delta-G solvation = -4201.849451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79198 -40.05066 -39.50911 -37.58089 -35.59840 -34.91450 -34.84163 -32.43210 -31.86189 -30.93211 -29.76718 -27.98482 -26.27181 -26.07274 -25.20480 -24.30347 -22.82060 -22.32099 -21.39857 -19.40856 -19.24393 -18.44518 -18.13605 -17.34190 -17.11175 -17.08982 -16.39866 -15.93848 -15.88638 -15.42139 -15.36910 -14.90198 -14.70194 -14.36210 -14.16250 -13.60443 -13.42601 -13.33896 -13.26652 -12.69775 -12.49634 -12.37431 -12.33677 -12.10403 -12.00002 -11.92578 -11.68707 -11.52148 -10.94381 -10.84655 -10.82512 -10.54434 -10.51796 -10.30773 -10.08359 -9.94060 -9.88341 -9.78837 -9.66681 -9.43634 -8.63514 -8.37957 -6.84545 -5.79946 -3.28227 -0.20434 0.41340 2.25185 2.46887 2.73138 3.17526 3.21342 3.34975 3.40231 3.42411 3.43195 3.58831 3.82159 4.20999 4.42882 4.45644 4.53046 4.62619 4.66107 4.79250 4.90998 4.94500 5.16120 5.22185 5.28019 5.44383 5.57578 5.62558 5.62851 5.73723 5.75417 5.84635 5.96019 5.99416 6.26112 6.33665 6.46015 6.47174 6.58238 6.72590 6.82880 6.91477 7.13269 7.27833 7.65837 7.70289 7.73777 7.74476 8.27613 8.32504 9.14569 9.76922 10.25660 11.24346 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.001569 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.519829 B =17845.898630 C =18248.806529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.155 4.155 14 C 0.103 3.897 15 N -0.613 5.613 16 C 0.528 3.472 17 O -0.542 6.542 18 C -0.149 4.149 19 C 0.132 3.868 20 N -0.709 5.709 21 C 0.574 3.426 22 O -0.521 6.521 23 C 0.031 3.969 24 C 0.111 3.889 25 N -0.440 5.440 26 C 0.072 3.928 27 C 0.051 3.949 28 N -0.413 5.413 29 C 0.086 3.914 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.410 0.590 43 H 0.185 0.815 44 H 0.178 0.822 45 H 0.179 0.821 46 H 0.068 0.932 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -29.032 -7.712 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.020 4.020 15 N -0.347 5.347 16 C 0.315 3.685 17 O -0.420 6.420 18 C -0.189 4.189 19 C 0.009 3.991 20 N -0.360 5.360 21 C 0.357 3.643 22 O -0.396 6.396 23 C -0.110 4.110 24 C -0.049 4.049 25 N -0.154 5.154 26 C -0.089 4.089 27 C -0.112 4.112 28 N -0.131 5.131 29 C -0.038 4.038 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.246 0.754 43 H 0.201 0.799 44 H 0.195 0.805 45 H 0.196 0.804 46 H 0.087 0.913 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.545 -28.668 -6.015 29.812 hybrid contribution 0.286 0.814 -0.859 1.217 sum 5.831 -27.854 -6.874 29.276 Atomic orbital electron populations 1.20819 0.82474 0.95598 0.99726 1.43859 1.01864 0.99869 1.84810 1.19218 0.98856 0.85191 1.36040 0.91171 1.25066 0.97954 0.98717 0.97577 1.70067 1.20133 1.27515 1.36913 0.86216 0.78755 0.83880 0.77429 1.21414 1.21695 1.20409 1.21506 0.96399 0.85759 0.90124 0.90357 1.23223 1.02897 0.92769 1.00588 1.22048 1.00662 0.99274 0.80046 1.48541 1.69045 1.09873 1.07263 1.19843 0.77429 0.84798 0.86448 1.90750 1.51986 1.84907 1.14309 1.21769 1.04546 0.93096 0.99504 1.21168 1.03393 0.79543 0.95001 1.45811 1.70609 1.08690 1.10910 1.17587 0.77722 0.82809 0.86222 1.90860 1.50797 1.84303 1.13593 1.22216 1.01588 0.96419 0.90826 1.23901 0.91137 0.87163 1.02662 1.68666 1.09297 1.23983 1.13412 1.24170 0.93653 1.00994 0.90040 1.23889 0.96352 0.88448 1.02499 1.68335 1.07210 1.25567 1.12005 1.23167 1.01088 0.79074 1.00435 0.94823 0.93939 0.97916 0.93556 0.90544 0.90476 0.91789 0.92038 0.88226 0.88287 0.89945 0.89912 0.75428 0.79853 0.80546 0.80365 0.91332 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 7.60 59.85 0.45 4.15 16 2 N -0.58 -13.84 2.96 -170.90 -0.51 -14.35 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.11 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.01 0.17 5.08 -17.43 -0.09 0.08 16 6 N -0.90 -25.78 10.78 55.49 0.60 -25.18 16 7 Si 0.91 21.35 29.58 -169.99 -5.03 16.32 16 8 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.17 3.29 3.55 -65.67 -0.23 3.06 16 12 H 0.08 1.52 7.95 -51.93 -0.41 1.10 16 13 C -0.15 -2.26 6.49 -24.90 -0.16 -2.42 16 14 C 0.10 1.21 6.48 -3.07 -0.02 1.19 16 15 N -0.61 -9.20 3.32 -170.39 -0.57 -9.76 16 16 C 0.53 7.78 7.85 -10.99 -0.09 7.69 16 17 O -0.54 -10.33 16.24 5.55 0.09 -10.24 16 18 C -0.15 -1.40 5.01 -27.88 -0.14 -1.54 16 19 C 0.13 1.42 4.96 -4.04 -0.02 1.40 16 20 N -0.71 -6.34 5.55 -61.15 -0.34 -6.68 16 21 C 0.57 6.12 7.81 -12.19 -0.10 6.03 16 22 O -0.52 -7.26 16.35 5.35 0.09 -7.17 16 23 C 0.03 0.27 6.75 -82.84 -0.56 -0.29 16 24 C 0.11 0.91 10.77 -17.00 -0.18 0.73 16 25 N -0.44 -3.31 10.49 -12.71 -0.13 -3.44 16 26 C 0.07 0.32 11.23 -17.24 -0.19 0.13 16 27 C 0.05 0.22 11.22 -17.38 -0.20 0.02 16 28 N -0.41 -2.92 9.71 -9.61 -0.09 -3.02 16 29 C 0.09 1.62 6.47 -2.41 -0.02 1.60 16 30 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 31 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 32 H 0.00 0.05 6.33 -51.92 -0.33 -0.28 16 33 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.19 6.36 -51.93 -0.33 0.86 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.41 2.75 7.82 -40.82 -0.32 2.43 16 43 H 0.18 1.39 7.65 -52.49 -0.40 0.99 16 44 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 45 H 0.18 0.11 8.06 -52.49 -0.42 -0.31 16 46 H 0.07 1.38 7.06 -51.93 -0.37 1.02 16 47 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -34.70 392.31 -8.35 -43.05 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.69 Total: -0.17 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -1.68 Total: 14.73 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -1.04 Total: -62.43 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.18 Total: -17.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.70 -8.35 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194097691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.448 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds