Wall clock time and date at job start Wed Apr 1 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99768 * 2 1 4 4 H 1.08002 * 119.99578 * 203.29969 * 3 2 1 5 5 C 1.38816 * 120.00035 * 23.29626 * 3 2 1 6 6 N 1.31611 * 119.99855 * 13.98123 * 5 3 2 7 7 Si 1.86793 * 119.99852 * 193.97839 * 5 3 2 8 8 H 1.48503 * 109.46921 * 90.00011 * 7 5 3 9 9 H 1.48493 * 109.47328 * 210.00168 * 7 5 3 10 10 H 1.48498 * 109.47505 * 330.00381 * 7 5 3 11 11 C 1.46504 * 120.00111 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.88472 * 182.42854 * 11 2 1 13 13 C 1.55147 * 111.00616 * 58.54687 * 11 2 1 14 14 C 1.54319 * 102.94462 * 206.38793 * 13 11 2 15 15 N 1.47022 * 107.27143 * 22.19131 * 14 13 11 16 16 C 1.34773 * 125.64861 * 181.02962 * 15 14 13 17 17 O 1.21286 * 120.00036 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00399 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47626 * 180.02562 * 18 16 15 20 20 N 1.46497 * 109.47323 * 179.97438 * 19 18 16 21 21 C 1.34773 * 120.00097 * 179.97438 * 20 19 18 22 22 O 1.21520 * 120.00054 * 0.02562 * 21 20 19 23 23 C 1.48150 * 120.00403 * 180.02562 * 21 20 19 24 24 C 1.39436 * 120.09799 * 180.02562 * 23 21 20 25 25 N 1.32083 * 119.87157 * 180.02562 * 24 23 21 26 26 C 1.32143 * 120.07415 * 0.02562 * 25 24 23 27 27 C 1.38732 * 120.18930 * 359.97438 * 26 25 24 28 28 N 1.31800 * 120.12954 * 0.26364 * 27 26 25 29 29 C 1.47424 * 108.70128 * 1.28603 * 15 14 13 30 30 H 1.08996 * 109.46955 * 275.16526 * 1 2 3 31 31 H 1.09001 * 109.47196 * 35.17580 * 1 2 3 32 32 H 1.09007 * 109.46433 * 155.17128 * 1 2 3 33 33 H 0.97003 * 120.00174 * 179.97438 * 6 5 3 34 34 H 1.09004 * 110.72062 * 88.02201 * 13 11 2 35 35 H 1.09002 * 110.71862 * 324.75136 * 13 11 2 36 36 H 1.09002 * 109.88212 * 262.77685 * 14 13 11 37 37 H 1.08994 * 109.88662 * 141.61205 * 14 13 11 38 38 H 1.09003 * 109.47062 * 59.99991 * 18 16 15 39 39 H 1.09005 * 109.46846 * 300.00697 * 18 16 15 40 40 H 1.09003 * 109.47336 * 59.99634 * 19 18 16 41 41 H 1.09003 * 109.46658 * 300.00162 * 19 18 16 42 42 H 0.97000 * 120.00005 * 0.02562 * 20 19 18 43 43 H 1.07995 * 120.07025 * 0.02562 * 24 23 21 44 44 H 1.07991 * 119.90650 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.93397 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.36041 * 94.48382 * 29 15 14 47 47 H 1.08997 * 110.37054 * 216.80294 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1636 1.2241 -0.3700 5 6 1.5404 2.3391 0.4754 6 7 0.4271 2.2557 1.1725 7 14 2.3007 4.0091 0.1260 8 1 1.7559 4.5443 -1.1476 9 1 1.9760 4.9426 1.2343 10 1 3.7747 3.8682 0.0133 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.8211 -2.1288 -1.2346 14 6 2.0906 -3.5685 -0.7485 15 7 2.0434 -3.5490 0.7209 16 6 2.2487 -4.6091 1.5274 17 8 2.1844 -4.4766 2.7313 18 6 2.5580 -5.9591 0.9335 19 6 2.7448 -6.9802 2.0575 20 7 3.0449 -8.2927 1.4801 21 6 3.2501 -9.3528 2.2867 22 8 3.1856 -9.2200 3.4929 23 6 3.5541 -10.6800 1.7028 24 6 3.7662 -11.7782 2.5354 25 7 4.0375 -12.9593 2.0101 26 6 4.1084 -13.1001 0.6981 27 6 3.8979 -12.0093 -0.1329 28 7 3.6313 -10.8262 0.3831 29 6 1.7284 -2.1792 1.1656 30 1 -0.3633 0.0925 1.0235 31 1 -0.3634 0.8400 -0.5920 32 1 -0.3632 -0.9328 -0.4316 33 1 0.0016 3.0615 1.5050 34 1 2.4582 -1.8831 -2.0843 35 1 0.7694 -1.9983 -1.4893 36 1 3.0752 -3.8947 -1.0835 37 1 1.3240 -4.2399 -1.1351 38 1 3.4727 -5.8958 0.3440 39 1 1.7336 -6.2716 0.2925 40 1 1.8299 -7.0434 2.6467 41 1 3.5690 -6.6678 2.6988 42 1 3.0967 -8.3986 0.5173 43 1 3.7088 -11.6634 3.6077 44 1 4.3308 -14.0669 0.2716 45 1 3.9572 -12.1289 -1.2046 46 1 0.6559 -2.0702 1.3272 47 1 2.2763 -1.9408 2.0772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194097691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:09 Heat of formation + Delta-G solvation = -14.642073 kcal Electronic energy + Delta-G solvation = -29054.762451 eV Core-core repulsion = 24851.740400 eV Total energy + Delta-G solvation = -4203.022051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30505 -41.18723 -40.39769 -38.97308 -36.58736 -36.43114 -35.43819 -33.56379 -32.95256 -31.99108 -31.09082 -29.36949 -28.06767 -26.95073 -25.82182 -25.36046 -24.20805 -23.48304 -22.17486 -20.95803 -20.27236 -19.22537 -18.94934 -18.69355 -18.15665 -17.77132 -17.60173 -17.06861 -16.78818 -16.53113 -16.25639 -15.93559 -15.76215 -15.45838 -15.11652 -14.96952 -14.73057 -14.50921 -14.38794 -14.07404 -13.87171 -13.68040 -13.39888 -13.10798 -12.96477 -12.80902 -12.78487 -12.56116 -12.46067 -12.40675 -12.39662 -12.18112 -12.03422 -11.81339 -11.66584 -11.38680 -10.98505 -10.64781 -10.59783 -10.23841 -10.23684 -9.65306 -8.79543 -7.84498 -5.34839 -0.70855 -0.02955 1.47821 1.48027 1.56073 1.57253 1.59420 1.62655 2.14056 2.51471 2.69455 2.87068 3.17740 3.27341 3.36573 3.49605 3.58002 3.72875 3.78816 3.94456 4.03124 4.08846 4.13013 4.23392 4.32495 4.39612 4.45540 4.48921 4.53269 4.75334 4.77201 4.81388 4.86732 4.90977 5.05017 5.17894 5.21149 5.24828 5.26864 5.33749 5.45810 5.64664 5.70389 5.99843 6.29574 6.30910 6.57549 6.61710 6.97374 7.11141 7.13817 7.83744 8.27627 9.18045 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.001569 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.519829 B =17845.898630 C =18248.806529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.267 1.267 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.613 5.613 16 C 0.521 3.479 17 O -0.597 6.597 18 C -0.128 4.128 19 C 0.138 3.862 20 N -0.692 5.692 21 C 0.571 3.429 22 O -0.566 6.566 23 C 0.012 3.988 24 C 0.098 3.902 25 N -0.464 5.464 26 C 0.085 3.915 27 C 0.061 3.939 28 N -0.421 5.421 29 C 0.096 3.904 30 H -0.002 1.002 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.248 0.752 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.425 0.575 43 H 0.175 0.825 44 H 0.218 0.782 45 H 0.224 0.776 46 H 0.048 0.952 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -32.065 -12.060 35.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.055 3.945 12 H 0.092 0.908 13 C -0.181 4.181 14 C -0.016 4.016 15 N -0.346 5.346 16 C 0.311 3.689 17 O -0.478 6.478 18 C -0.167 4.167 19 C 0.014 3.986 20 N -0.344 5.344 21 C 0.355 3.645 22 O -0.444 6.444 23 C -0.127 4.127 24 C -0.060 4.060 25 N -0.178 5.178 26 C -0.077 4.077 27 C -0.102 4.102 28 N -0.139 5.139 29 C -0.029 4.029 30 H 0.016 0.984 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.263 0.737 43 H 0.192 0.808 44 H 0.235 0.765 45 H 0.240 0.760 46 H 0.066 0.934 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.008 -31.728 -10.423 34.123 hybrid contribution -0.101 1.570 0.417 1.628 sum 6.907 -30.158 -10.006 32.516 Atomic orbital electron populations 1.20494 0.82749 0.96184 0.97371 1.44050 1.02022 1.00967 1.85152 1.19604 0.99070 0.86407 1.34643 0.90591 1.25847 0.98725 1.02120 0.98068 1.70246 1.21760 1.27759 1.38679 0.85214 0.78500 0.79630 0.76775 1.20980 1.22647 1.19144 1.21690 0.95663 0.84580 0.92565 0.90847 1.23080 1.02882 0.93455 0.98658 1.22318 1.04163 0.97860 0.77275 1.48586 1.68814 1.08159 1.09041 1.20822 0.76003 0.86297 0.85801 1.90736 1.54201 1.85858 1.17033 1.21707 1.07548 0.88592 0.98896 1.20917 1.01374 0.80868 0.95456 1.45594 1.69785 1.07549 1.11466 1.17972 0.76845 0.83875 0.85801 1.90831 1.52865 1.85148 1.15579 1.21785 1.03927 0.95163 0.91810 1.23796 0.91971 0.87721 1.02543 1.68696 1.10267 1.23474 1.15371 1.24944 0.91037 1.02865 0.88886 1.24667 0.93968 0.87172 1.04434 1.68326 1.07655 1.27136 1.10777 1.22694 0.99159 0.82014 0.99083 0.98357 0.96470 0.94413 0.94285 0.88563 0.91061 0.88007 0.88367 0.84591 0.84653 0.92342 0.92323 0.73665 0.80824 0.76505 0.75999 0.93399 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.49 7.60 127.77 0.97 9.46 16 2 N -0.60 -28.84 2.96 -694.60 -2.05 -30.89 16 3 C -0.27 -14.26 9.60 84.03 0.81 -13.46 16 4 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 5 C -0.05 -2.89 5.08 84.86 0.43 -2.46 16 6 N -0.94 -55.75 10.78 21.65 0.23 -55.51 16 7 Si 0.97 44.60 29.58 68.60 2.03 46.63 16 8 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 C 0.16 6.14 3.55 46.46 0.16 6.31 16 12 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 13 C -0.14 -3.65 6.49 31.78 0.21 -3.44 16 14 C 0.11 1.94 6.48 86.73 0.56 2.51 16 15 N -0.61 -17.20 3.32 -811.38 -2.70 -19.90 16 16 C 0.52 14.73 7.85 87.66 0.69 15.41 16 17 O -0.60 -23.62 16.24 -3.05 -0.05 -23.67 16 18 C -0.13 -1.97 5.01 29.85 0.15 -1.82 16 19 C 0.14 2.90 4.96 86.38 0.43 3.33 16 20 N -0.69 -11.47 5.55 -465.68 -2.58 -14.05 16 21 C 0.57 12.34 7.81 86.88 0.68 13.02 16 22 O -0.57 -16.88 16.35 -3.78 -0.06 -16.94 16 23 C 0.01 0.20 6.75 41.89 0.28 0.48 16 24 C 0.10 1.62 10.77 84.94 0.92 2.54 16 25 N -0.46 -6.31 10.49 -194.13 -2.04 -8.34 16 26 C 0.08 0.45 11.23 84.76 0.95 1.40 16 27 C 0.06 0.27 11.22 84.82 0.95 1.22 16 28 N -0.42 -4.79 9.71 -184.33 -1.79 -6.58 16 29 C 0.10 3.68 6.47 86.93 0.56 4.24 16 30 H 0.00 -0.10 7.33 -2.39 -0.02 -0.12 16 31 H 0.02 0.87 7.39 -2.39 -0.02 0.85 16 32 H 0.04 1.50 6.33 -2.38 -0.02 1.49 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 1.95 6.36 -2.39 -0.02 1.94 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 41 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 42 H 0.42 4.37 7.82 -92.71 -0.73 3.65 16 43 H 0.17 2.98 7.65 -2.91 -0.02 2.96 16 44 H 0.22 -0.77 8.06 -2.92 -0.02 -0.79 16 45 H 0.22 -1.08 8.06 -2.91 -0.02 -1.10 16 46 H 0.05 2.01 7.06 -2.38 -0.02 1.99 16 47 H 0.04 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -84.06 392.31 0.02 -84.05 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.28 Total: 6.49 kcal Atomic # 6 Polarization: 29.98 SS G_CDS: 8.75 Total: 38.73 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -10.93 Total: -135.28 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.11 Total: -40.61 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -84.06 0.02 -84.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194097691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.404 kcal (2) G-P(sol) polarization free energy of solvation -84.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds