Wall clock time and date at job start Wed Apr 1 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00105 * 2 1 4 4 H 1.07999 * 119.99748 * 161.16094 * 3 2 1 5 5 C 1.38808 * 119.99997 * 340.89265 * 3 2 1 6 6 N 1.31612 * 120.00099 * 346.74019 * 5 3 2 7 7 Si 1.86801 * 119.99632 * 166.74142 * 5 3 2 8 8 H 1.48496 * 109.47118 * 60.00288 * 7 5 3 9 9 H 1.48500 * 109.46895 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47384 * 299.99938 * 7 5 3 11 11 C 1.46501 * 119.99665 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64132 * 183.14001 * 11 2 1 13 13 C 1.55155 * 110.72221 * 306.47856 * 11 2 1 14 14 C 1.54909 * 101.58381 * 153.86313 * 13 11 2 15 15 N 1.47419 * 104.83100 * 322.99336 * 14 13 11 16 16 C 1.34788 * 125.64803 * 204.09353 * 15 14 13 17 17 O 1.21272 * 120.00013 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99622 * 0.03394 * 16 15 14 19 19 C 1.52994 * 109.47051 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.47439 * 180.02562 * 19 18 16 21 21 C 1.34773 * 120.00305 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.48148 * 120.00116 * 179.97438 * 21 20 19 24 24 C 1.39445 * 120.09648 * 179.97438 * 23 21 20 25 25 N 1.32085 * 119.87254 * 180.02562 * 24 23 21 26 26 C 1.32139 * 120.07088 * 0.02562 * 25 24 23 27 27 C 1.38733 * 120.19598 * 359.97438 * 26 25 24 28 28 N 1.31799 * 120.12389 * 359.72240 * 27 26 25 29 29 C 1.47017 * 108.70699 * 24.12497 * 15 14 13 30 30 H 1.08997 * 109.47363 * 84.80529 * 1 2 3 31 31 H 1.08992 * 109.47199 * 204.81175 * 1 2 3 32 32 H 1.09008 * 109.46866 * 324.81194 * 1 2 3 33 33 H 0.97007 * 119.99884 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00308 * 271.94206 * 13 11 2 35 35 H 1.09003 * 111.00228 * 35.78754 * 13 11 2 36 36 H 1.08997 * 110.36865 * 204.15209 * 14 13 11 37 37 H 1.09004 * 110.45433 * 81.87157 * 14 13 11 38 38 H 1.09002 * 109.47602 * 300.00609 * 18 16 15 39 39 H 1.09003 * 109.46910 * 60.00950 * 18 16 15 40 40 H 1.09002 * 109.47303 * 300.00655 * 19 18 16 41 41 H 1.09004 * 109.47014 * 59.99972 * 19 18 16 42 42 H 0.96998 * 119.99384 * 359.97438 * 20 19 18 43 43 H 1.08001 * 120.06611 * 0.02943 * 24 23 21 44 44 H 1.07997 * 119.90226 * 180.02562 * 26 25 24 45 45 H 1.07993 * 119.93804 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.88416 * 239.52253 * 29 15 14 47 47 H 1.09008 * 110.01561 * 118.43266 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2109 0.3020 5 6 1.5131 2.3549 -0.3935 6 7 0.3510 2.2964 -1.0087 7 14 2.3057 4.0111 -0.0499 8 1 3.6266 4.0773 -0.7251 9 1 1.4316 5.0948 -0.5664 10 1 2.4892 4.1779 1.4141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0924 0.0554 13 6 1.7247 -2.1761 1.1659 14 6 2.0497 -3.5867 0.6141 15 7 1.7499 -3.5064 -0.8270 16 6 1.4403 -4.5482 -1.6242 17 8 1.2117 -4.3644 -2.8009 18 6 1.3780 -5.9414 -1.0531 19 6 1.0094 -6.9306 -2.1606 20 7 0.9482 -8.2849 -1.6053 21 6 0.6396 -9.3268 -2.4026 22 8 0.4115 -9.1428 -3.5819 23 6 0.5783 -10.6964 -1.8412 24 6 0.2586 -11.7758 -2.6641 25 7 0.2047 -12.9950 -2.1588 26 6 0.4527 -13.1915 -0.8759 27 6 0.7711 -12.1198 -0.0545 28 7 0.8329 -10.9008 -0.5519 29 6 1.8454 -2.1019 -1.2510 30 1 -0.3634 0.0930 -1.0234 31 1 -0.3633 -0.9327 0.4312 32 1 -0.3633 0.8399 0.5923 33 1 -0.0937 3.1133 -1.2840 34 1 2.2915 -1.9717 2.0742 35 1 0.6549 -2.0619 1.3408 36 1 1.4182 -4.3356 1.0919 37 1 3.1022 -3.8235 0.7700 38 1 2.3499 -6.2076 -0.6374 39 1 0.6240 -5.9784 -0.2668 40 1 0.0377 -6.6646 -2.5766 41 1 1.7636 -6.8935 -2.9467 42 1 1.1307 -8.4317 -0.6641 43 1 0.0555 -11.6152 -3.7126 44 1 0.4083 -14.1896 -0.4657 45 1 0.9735 -12.2853 0.9933 46 1 0.8900 -1.7722 -1.6593 47 1 2.6274 -1.9913 -2.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194097692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:19 Heat of formation + Delta-G solvation = 15.695915 kcal Electronic energy + Delta-G solvation = -29123.743023 eV Core-core repulsion = 24922.036525 eV Total energy + Delta-G solvation = -4201.706497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.78668 -40.04298 -39.50339 -37.59063 -35.59213 -34.90935 -34.83589 -32.42651 -31.85331 -30.92278 -29.72436 -27.99996 -26.26817 -26.06138 -25.19902 -24.28424 -22.77969 -22.38908 -21.39280 -19.42176 -19.16707 -18.45882 -18.13382 -17.33971 -17.11813 -17.05592 -16.39336 -15.95515 -15.85426 -15.42608 -15.34878 -14.93880 -14.74800 -14.35262 -14.14564 -13.62582 -13.41753 -13.38221 -13.22013 -12.65547 -12.54304 -12.33469 -12.19915 -12.07978 -11.94624 -11.89680 -11.69279 -11.53562 -10.93578 -10.83316 -10.82107 -10.60413 -10.45348 -10.32671 -10.07840 -9.93907 -9.84343 -9.78553 -9.65745 -9.42944 -8.59601 -8.35988 -6.89350 -5.78092 -3.23133 -0.19940 0.41811 2.25800 2.47610 2.75182 3.18907 3.21869 3.36245 3.40798 3.42427 3.43316 3.59298 3.82639 4.21544 4.43732 4.46250 4.53512 4.62647 4.66308 4.80044 4.91458 4.94161 5.15572 5.21759 5.29764 5.46705 5.55721 5.63032 5.63484 5.74203 5.74972 5.84754 5.94671 6.00109 6.29016 6.32029 6.46504 6.47756 6.62473 6.79362 6.82379 6.92045 7.13870 7.35097 7.67674 7.70980 7.75035 7.76915 8.28738 8.32881 9.16078 9.78757 10.25772 11.26470 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.001585 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.197990 B =17659.031174 C =18105.607079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.262 4.262 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.527 3.473 17 O -0.541 6.541 18 C -0.149 4.149 19 C 0.132 3.868 20 N -0.709 5.709 21 C 0.574 3.426 22 O -0.521 6.521 23 C 0.031 3.969 24 C 0.111 3.889 25 N -0.440 5.440 26 C 0.072 3.928 27 C 0.051 3.949 28 N -0.413 5.413 29 C 0.085 3.915 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.410 0.590 43 H 0.185 0.815 44 H 0.177 0.823 45 H 0.179 0.821 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 -29.557 7.047 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.314 3.686 17 O -0.419 6.419 18 C -0.189 4.189 19 C 0.009 3.991 20 N -0.360 5.360 21 C 0.357 3.643 22 O -0.395 6.395 23 C -0.110 4.110 24 C -0.049 4.049 25 N -0.154 5.154 26 C -0.089 4.089 27 C -0.112 4.112 28 N -0.131 5.131 29 C -0.039 4.039 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.246 0.754 43 H 0.201 0.799 44 H 0.195 0.805 45 H 0.196 0.804 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.309 -29.109 5.393 29.634 hybrid contribution 0.463 0.798 0.768 1.200 sum 1.772 -28.311 6.161 29.028 Atomic orbital electron populations 1.20831 0.82230 0.95631 0.99616 1.43956 1.02013 0.99884 1.84834 1.19215 0.96333 0.84591 1.39000 0.91036 1.24992 0.97537 0.98490 0.98518 1.70089 1.16803 1.26925 1.41226 0.86281 0.78429 0.83470 0.78010 1.20903 1.21610 1.21035 1.21340 0.96373 0.85958 0.90110 0.90357 1.23351 1.02898 0.93171 0.99975 1.22343 1.00102 0.99211 0.80631 1.48563 1.67994 1.08035 1.09995 1.19859 0.77351 0.85415 0.86013 1.90746 1.49792 1.85335 1.16023 1.21769 1.04580 0.92801 0.99758 1.21167 1.04038 0.78440 0.95459 1.45810 1.69729 1.06940 1.13537 1.17585 0.77810 0.83123 0.85824 1.90860 1.48904 1.84543 1.15237 1.22219 1.01227 0.96295 0.91300 1.23905 0.91660 0.87141 1.02161 1.68667 1.10354 1.22823 1.13511 1.24169 0.93052 1.01520 0.90124 1.23887 0.96813 0.88250 1.02236 1.68331 1.08275 1.24467 1.12046 1.22966 1.02406 0.78484 1.00054 0.95234 0.98091 0.93306 0.93540 0.90343 0.90318 0.91325 0.91525 0.88287 0.88246 0.89910 0.89949 0.75435 0.79852 0.80549 0.80367 0.90876 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.79 59.85 0.47 4.32 16 2 N -0.59 -13.97 2.94 -171.39 -0.50 -14.47 16 3 C -0.26 -6.92 9.67 -15.06 -0.15 -7.07 16 4 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 5 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 6 N -0.91 -26.00 10.49 55.49 0.58 -25.42 16 7 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.17 3.26 3.45 -66.09 -0.23 3.03 16 12 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 13 C -0.15 -2.25 6.59 -24.58 -0.16 -2.41 16 14 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 15 N -0.61 -9.24 3.33 -170.52 -0.57 -9.81 16 16 C 0.53 7.87 7.85 -10.98 -0.09 7.78 16 17 O -0.54 -10.48 16.31 5.56 0.09 -10.39 16 18 C -0.15 -1.41 4.82 -27.89 -0.13 -1.55 16 19 C 0.13 1.44 4.96 -4.05 -0.02 1.42 16 20 N -0.71 -6.41 5.55 -61.16 -0.34 -6.74 16 21 C 0.57 6.17 7.81 -12.19 -0.10 6.08 16 22 O -0.52 -7.31 16.35 5.35 0.09 -7.22 16 23 C 0.03 0.27 6.75 -82.84 -0.56 -0.29 16 24 C 0.11 0.92 10.77 -16.99 -0.18 0.74 16 25 N -0.44 -3.33 10.49 -12.71 -0.13 -3.46 16 26 C 0.07 0.33 11.23 -17.24 -0.19 0.13 16 27 C 0.05 0.22 11.22 -17.38 -0.20 0.02 16 28 N -0.41 -2.94 9.71 -9.62 -0.09 -3.04 16 29 C 0.09 1.61 6.51 -3.07 -0.02 1.59 16 30 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 31 H 0.00 0.01 6.03 -51.93 -0.31 -0.30 16 32 H 0.05 1.26 7.08 -51.92 -0.37 0.89 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.24 6.05 -51.93 -0.31 0.93 16 36 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.41 2.77 7.82 -40.82 -0.32 2.45 16 43 H 0.18 1.40 7.65 -52.49 -0.40 1.00 16 44 H 0.18 0.15 8.06 -52.49 -0.42 -0.28 16 45 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16 46 H 0.07 1.61 7.13 -51.93 -0.37 1.24 16 47 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -35.02 390.65 -8.28 -43.29 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.60 Total: 0.09 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -1.66 Total: 14.94 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -1.05 Total: -62.94 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.18 Total: -17.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.02 -8.28 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194097692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.988 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds