Wall clock time and date at job start Wed Apr 1 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00105 * 2 1 4 4 H 1.07999 * 119.99748 * 161.16094 * 3 2 1 5 5 C 1.38808 * 119.99997 * 340.89265 * 3 2 1 6 6 N 1.31612 * 120.00099 * 346.74019 * 5 3 2 7 7 Si 1.86801 * 119.99632 * 166.74142 * 5 3 2 8 8 H 1.48496 * 109.47118 * 60.00288 * 7 5 3 9 9 H 1.48500 * 109.46895 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47384 * 299.99938 * 7 5 3 11 11 C 1.46501 * 119.99665 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64132 * 183.14001 * 11 2 1 13 13 C 1.55155 * 110.72221 * 306.47856 * 11 2 1 14 14 C 1.54909 * 101.58381 * 153.86313 * 13 11 2 15 15 N 1.47419 * 104.83100 * 322.99336 * 14 13 11 16 16 C 1.34788 * 125.64803 * 204.09353 * 15 14 13 17 17 O 1.21272 * 120.00013 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99622 * 0.03394 * 16 15 14 19 19 C 1.52994 * 109.47051 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.47439 * 180.02562 * 19 18 16 21 21 C 1.34773 * 120.00305 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.48148 * 120.00116 * 179.97438 * 21 20 19 24 24 C 1.39445 * 120.09648 * 179.97438 * 23 21 20 25 25 N 1.32085 * 119.87254 * 180.02562 * 24 23 21 26 26 C 1.32139 * 120.07088 * 0.02562 * 25 24 23 27 27 C 1.38733 * 120.19598 * 359.97438 * 26 25 24 28 28 N 1.31799 * 120.12389 * 359.72240 * 27 26 25 29 29 C 1.47017 * 108.70699 * 24.12497 * 15 14 13 30 30 H 1.08997 * 109.47363 * 84.80529 * 1 2 3 31 31 H 1.08992 * 109.47199 * 204.81175 * 1 2 3 32 32 H 1.09008 * 109.46866 * 324.81194 * 1 2 3 33 33 H 0.97007 * 119.99884 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00308 * 271.94206 * 13 11 2 35 35 H 1.09003 * 111.00228 * 35.78754 * 13 11 2 36 36 H 1.08997 * 110.36865 * 204.15209 * 14 13 11 37 37 H 1.09004 * 110.45433 * 81.87157 * 14 13 11 38 38 H 1.09002 * 109.47602 * 300.00609 * 18 16 15 39 39 H 1.09003 * 109.46910 * 60.00950 * 18 16 15 40 40 H 1.09002 * 109.47303 * 300.00655 * 19 18 16 41 41 H 1.09004 * 109.47014 * 59.99972 * 19 18 16 42 42 H 0.96998 * 119.99384 * 359.97438 * 20 19 18 43 43 H 1.08001 * 120.06611 * 0.02943 * 24 23 21 44 44 H 1.07997 * 119.90226 * 180.02562 * 26 25 24 45 45 H 1.07993 * 119.93804 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.88416 * 239.52253 * 29 15 14 47 47 H 1.09008 * 110.01561 * 118.43266 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2109 0.3020 5 6 1.5131 2.3549 -0.3935 6 7 0.3510 2.2964 -1.0087 7 14 2.3057 4.0111 -0.0499 8 1 3.6266 4.0773 -0.7251 9 1 1.4316 5.0948 -0.5664 10 1 2.4892 4.1779 1.4141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0924 0.0554 13 6 1.7247 -2.1761 1.1659 14 6 2.0497 -3.5867 0.6141 15 7 1.7499 -3.5064 -0.8270 16 6 1.4403 -4.5482 -1.6242 17 8 1.2117 -4.3644 -2.8009 18 6 1.3780 -5.9414 -1.0531 19 6 1.0094 -6.9306 -2.1606 20 7 0.9482 -8.2849 -1.6053 21 6 0.6396 -9.3268 -2.4026 22 8 0.4115 -9.1428 -3.5819 23 6 0.5783 -10.6964 -1.8412 24 6 0.2586 -11.7758 -2.6641 25 7 0.2047 -12.9950 -2.1588 26 6 0.4527 -13.1915 -0.8759 27 6 0.7711 -12.1198 -0.0545 28 7 0.8329 -10.9008 -0.5519 29 6 1.8454 -2.1019 -1.2510 30 1 -0.3634 0.0930 -1.0234 31 1 -0.3633 -0.9327 0.4312 32 1 -0.3633 0.8399 0.5923 33 1 -0.0937 3.1133 -1.2840 34 1 2.2915 -1.9717 2.0742 35 1 0.6549 -2.0619 1.3408 36 1 1.4182 -4.3356 1.0919 37 1 3.1022 -3.8235 0.7700 38 1 2.3499 -6.2076 -0.6374 39 1 0.6240 -5.9784 -0.2668 40 1 0.0377 -6.6646 -2.5766 41 1 1.7636 -6.8935 -2.9467 42 1 1.1307 -8.4317 -0.6641 43 1 0.0555 -11.6152 -3.7126 44 1 0.4083 -14.1896 -0.4657 45 1 0.9735 -12.2853 0.9933 46 1 0.8900 -1.7722 -1.6593 47 1 2.6274 -1.9913 -2.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194097692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:15 Heat of formation + Delta-G solvation = -11.826045 kcal Electronic energy + Delta-G solvation = -29124.936464 eV Core-core repulsion = 24922.036525 eV Total energy + Delta-G solvation = -4202.899939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.30537 -41.19020 -40.40082 -38.99303 -36.58933 -36.43578 -35.43893 -33.55580 -32.95229 -31.98094 -31.06667 -29.39762 -28.08521 -26.94843 -25.81127 -25.33827 -24.18865 -23.56033 -22.17821 -20.88940 -20.29292 -19.23456 -18.96179 -18.69586 -18.14831 -17.77109 -17.55640 -17.07608 -16.78681 -16.61618 -16.25713 -15.94017 -15.77615 -15.47843 -15.10752 -14.98860 -14.84262 -14.48253 -14.38259 -13.95657 -13.87332 -13.60742 -13.29518 -13.13716 -12.95803 -12.80909 -12.71124 -12.55880 -12.49498 -12.40865 -12.38154 -12.19278 -12.11136 -11.78311 -11.66848 -11.38979 -10.98739 -10.62270 -10.59858 -10.24041 -10.23804 -9.64128 -8.86228 -7.83478 -5.30383 -0.70910 -0.02949 1.48183 1.50025 1.55968 1.56875 1.59600 1.63029 2.15224 2.52017 2.69414 2.87017 3.17705 3.28906 3.36549 3.49904 3.59134 3.72855 3.78654 3.87169 4.02634 4.08813 4.13867 4.29969 4.32454 4.38805 4.45855 4.49894 4.53274 4.71578 4.78343 4.81734 4.86513 4.93007 5.07042 5.18044 5.23255 5.25029 5.26894 5.34863 5.46572 5.63152 5.72304 5.99815 6.29296 6.29568 6.58055 6.61737 6.97307 7.11268 7.14390 7.84684 8.27460 9.19763 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.001585 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.197990 B =17659.031174 C =18105.607079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.603 5.603 3 C -0.265 4.265 4 H 0.082 0.918 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.973 3.027 8 H -0.276 1.276 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.142 4.142 14 C 0.104 3.896 15 N -0.612 5.612 16 C 0.519 3.481 17 O -0.598 6.598 18 C -0.128 4.128 19 C 0.138 3.862 20 N -0.692 5.692 21 C 0.570 3.430 22 O -0.566 6.566 23 C 0.012 3.988 24 C 0.098 3.902 25 N -0.464 5.464 26 C 0.085 3.915 27 C 0.062 3.938 28 N -0.421 5.421 29 C 0.096 3.904 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.022 0.978 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.425 0.575 43 H 0.175 0.825 44 H 0.219 0.781 45 H 0.224 0.776 46 H 0.031 0.969 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -32.808 11.322 34.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.801 3.199 8 H -0.202 1.202 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.055 3.945 12 H 0.101 0.899 13 C -0.181 4.181 14 C -0.017 4.017 15 N -0.345 5.345 16 C 0.309 3.691 17 O -0.479 6.479 18 C -0.167 4.167 19 C 0.014 3.986 20 N -0.344 5.344 21 C 0.355 3.645 22 O -0.444 6.444 23 C -0.127 4.127 24 C -0.060 4.060 25 N -0.178 5.178 26 C -0.077 4.077 27 C -0.102 4.102 28 N -0.139 5.139 29 C -0.030 4.030 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.264 0.736 43 H 0.192 0.808 44 H 0.235 0.765 45 H 0.240 0.760 46 H 0.049 0.951 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.019 -32.392 9.725 33.955 hybrid contribution -0.018 1.612 -0.491 1.685 sum 3.002 -30.780 9.235 32.275 Atomic orbital electron populations 1.20463 0.82853 0.96011 0.96994 1.44156 1.01998 1.01169 1.85101 1.19657 0.96761 0.85702 1.37385 0.90052 1.25805 0.98304 1.01961 0.99116 1.70287 1.18481 1.27044 1.43171 0.85253 0.77383 0.79114 0.78149 1.20209 1.22608 1.19921 1.21597 0.96292 0.84689 0.91915 0.89864 1.23230 1.02323 0.93731 0.98843 1.22640 1.03067 0.98211 0.77766 1.48623 1.67857 1.06194 1.11837 1.20866 0.75732 0.87176 0.85324 1.90731 1.52049 1.86344 1.18807 1.21710 1.07793 0.87955 0.99274 1.20910 1.01974 0.79866 0.95858 1.45590 1.68979 1.05762 1.14044 1.17975 0.76871 0.84278 0.85374 1.90830 1.50985 1.85384 1.17241 1.21782 1.03652 0.94882 0.92365 1.23799 0.92451 0.87716 1.02072 1.68697 1.11436 1.22226 1.15446 1.24947 0.90332 1.03562 0.88892 1.24668 0.94590 0.86972 1.03994 1.68323 1.08596 1.26098 1.10869 1.22489 0.99403 0.81515 0.99595 0.99110 0.94888 0.95933 0.94404 0.88022 0.91479 0.86932 0.88329 0.84361 0.84772 0.92544 0.92225 0.73649 0.80838 0.76495 0.75981 0.95079 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.79 127.77 1.00 9.98 16 2 N -0.60 -29.11 2.94 -696.15 -2.04 -31.15 16 3 C -0.27 -14.12 9.67 84.03 0.81 -13.31 16 4 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16 5 C -0.06 -3.19 5.11 84.86 0.43 -2.75 16 6 N -0.94 -56.52 10.49 21.65 0.23 -56.29 16 7 Si 0.97 44.66 29.57 68.60 2.03 46.69 16 8 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 C 0.16 6.04 3.45 46.18 0.16 6.20 16 12 H 0.08 2.97 7.90 -2.39 -0.02 2.95 16 13 C -0.14 -3.65 6.59 31.99 0.21 -3.44 16 14 C 0.10 1.89 6.69 86.86 0.58 2.47 16 15 N -0.61 -17.34 3.33 -811.80 -2.70 -20.04 16 16 C 0.52 14.94 7.85 87.66 0.69 15.62 16 17 O -0.60 -24.12 16.31 -3.01 -0.05 -24.16 16 18 C -0.13 -2.00 4.82 29.85 0.14 -1.85 16 19 C 0.14 2.95 4.96 86.38 0.43 3.38 16 20 N -0.69 -11.62 5.55 -465.69 -2.58 -14.20 16 21 C 0.57 12.47 7.81 86.88 0.68 13.15 16 22 O -0.57 -17.05 16.35 -3.77 -0.06 -17.11 16 23 C 0.01 0.20 6.75 41.89 0.28 0.49 16 24 C 0.10 1.64 10.77 84.95 0.92 2.55 16 25 N -0.46 -6.36 10.49 -194.11 -2.04 -8.40 16 26 C 0.08 0.46 11.23 84.77 0.95 1.41 16 27 C 0.06 0.27 11.22 84.82 0.95 1.23 16 28 N -0.42 -4.83 9.71 -184.33 -1.79 -6.62 16 29 C 0.10 3.69 6.51 86.73 0.56 4.26 16 30 H -0.01 -0.54 7.38 -2.39 -0.02 -0.55 16 31 H 0.03 1.38 6.03 -2.39 -0.01 1.36 16 32 H 0.02 1.19 7.08 -2.38 -0.02 1.18 16 33 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 36 H 0.11 1.18 7.48 -2.39 -0.02 1.17 16 37 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.13 1.28 7.85 -2.39 -0.02 1.27 16 40 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 41 H 0.06 1.55 8.10 -2.38 -0.02 1.53 16 42 H 0.42 4.42 7.82 -92.71 -0.73 3.70 16 43 H 0.17 3.01 7.65 -2.91 -0.02 2.99 16 44 H 0.22 -0.76 8.06 -2.91 -0.02 -0.78 16 45 H 0.22 -1.07 8.06 -2.91 -0.02 -1.10 16 46 H 0.03 1.45 7.13 -2.39 -0.02 1.43 16 47 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -85.55 390.65 0.07 -85.48 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.28 Total: 6.43 kcal Atomic # 6 Polarization: 30.57 SS G_CDS: 8.80 Total: 39.37 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -10.93 Total: -136.70 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.11 Total: -41.28 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -85.55 0.07 -85.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194097692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.653 kcal (2) G-P(sol) polarization free energy of solvation -85.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds